Wall clock time and date at job start Tue Mar 31 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48496 * 109.46861 * 270.00223 * 3 2 1 5 5 H 1.48495 * 109.47183 * 30.00124 * 3 2 1 6 6 H 1.48496 * 109.46757 * 150.00229 * 3 2 1 7 7 C 1.37873 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99750 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99661 * 179.97438 * 7 2 1 10 10 N 1.46509 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.35053 * 125.92745 * 124.70987 * 10 9 7 12 12 C 1.35070 * 107.98399 * 179.87352 * 11 10 9 13 13 C 1.50694 * 126.07593 * 180.15007 * 12 11 10 14 14 N 1.46900 * 109.47300 * 105.37628 * 13 12 11 15 15 C 1.46900 * 111.00316 * 184.74920 * 14 13 12 16 16 C 1.53001 * 109.46827 * 180.02562 * 15 14 13 17 17 C 1.53778 * 113.61221 * 274.12866 * 16 15 14 18 18 C 1.53953 * 87.02172 * 220.05167 * 17 16 15 19 19 C 1.53780 * 87.11127 * 25.36730 * 18 17 16 20 20 C 1.40871 * 107.85081 * 0.39322 * 12 11 10 21 21 C 1.48370 * 126.04376 * 179.75332 * 20 12 11 22 22 C 1.39768 * 120.90293 * 317.14637 * 21 20 12 23 23 C 1.37958 * 119.01986 * 179.72594 * 22 21 20 24 24 N 1.31941 * 120.87738 * 0.55412 * 23 22 21 25 25 C 1.31928 * 122.00843 * 359.71621 * 24 23 22 26 26 C 1.37964 * 120.87533 * 0.02562 * 25 24 23 27 27 N 1.31650 * 107.91868 * 359.75959 * 20 12 11 28 28 H 0.97001 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47207 * 60.00217 * 9 7 2 30 30 H 1.09001 * 109.47428 * 299.99689 * 9 7 2 31 31 H 1.08000 * 126.00698 * 0.02822 * 11 10 9 32 32 H 1.08998 * 109.47515 * 225.37894 * 13 12 11 33 33 H 1.08995 * 109.47008 * 345.37790 * 13 12 11 34 34 H 1.00903 * 111.00056 * 308.70431 * 14 13 12 35 35 H 1.08995 * 109.46686 * 299.99927 * 15 14 13 36 36 H 1.09002 * 109.47013 * 59.99828 * 15 14 13 37 37 H 1.08992 * 112.85369 * 45.33016 * 16 15 14 38 38 H 1.09002 * 113.61911 * 334.57615 * 17 16 15 39 39 H 1.09000 * 113.61450 * 105.47710 * 17 16 15 40 40 H 1.08996 * 113.53888 * 270.81334 * 18 17 16 41 41 H 1.09001 * 113.66679 * 139.93242 * 18 17 16 42 42 H 1.08998 * 113.61829 * 220.09074 * 19 18 17 43 43 H 1.08999 * 113.69523 * 89.19488 * 19 18 17 44 44 H 1.07997 * 120.48943 * 359.97438 * 22 21 20 45 45 H 1.08003 * 119.56116 * 180.24792 * 23 22 21 46 46 H 1.07994 * 119.56271 * 180.02562 * 25 24 23 47 47 H 1.08004 * 120.48381 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 4.8508 -3.1143 -0.9019 12 6 5.0580 -4.4042 -0.5592 13 6 5.9428 -5.3842 -1.2856 14 7 7.1762 -5.5942 -0.5158 15 6 8.1130 -6.4574 -1.2475 16 6 9.3821 -6.6530 -0.4157 17 6 10.4253 -5.5404 -0.6126 18 6 11.4945 -6.6477 -0.5798 19 6 10.3973 -7.6135 -1.0575 20 6 4.2958 -4.6723 0.5947 21 6 4.2218 -5.9699 1.3102 22 6 4.1124 -7.1725 0.6064 23 6 4.0523 -8.3572 1.3108 24 7 4.0858 -8.3631 2.6298 25 6 4.1829 -7.2504 3.3319 26 6 4.2535 -6.0226 2.7065 27 7 3.6604 -3.5679 0.9260 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 5.2904 -2.6029 -1.7455 32 1 5.4185 -6.3332 -1.3978 33 1 6.1920 -4.9882 -2.2700 34 1 7.6073 -4.7139 -0.2763 35 1 7.6469 -7.4253 -1.4318 36 1 8.3698 -5.9908 -2.1986 37 1 9.1725 -6.8747 0.6306 38 1 10.3489 -5.0356 -1.5757 39 1 10.4877 -4.8470 0.2260 40 1 11.8634 -6.8670 0.4221 41 1 12.2956 -6.5040 -1.3049 42 1 10.4370 -8.5913 -0.5775 43 1 10.3122 -7.6777 -2.1423 44 1 4.0795 -7.1746 -0.4731 45 1 3.9717 -9.2918 0.7757 46 1 4.2075 -7.3012 4.4103 47 1 4.3333 -5.1156 3.2875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278560930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:50 Heat of formation + Delta-G solvation = 108.465009 kcal Electronic energy + Delta-G solvation = -26774.176276 eV Core-core repulsion = 23151.056703 eV Total energy + Delta-G solvation = -3623.119573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20949 -40.67149 -39.81506 -36.76225 -35.63343 -34.47767 -32.77190 -32.23524 -31.59845 -29.81116 -28.21323 -26.45753 -25.63876 -25.29719 -24.24233 -23.35686 -22.90986 -21.50342 -20.86596 -20.15382 -19.14001 -18.13800 -17.30261 -17.00185 -16.80425 -16.57606 -16.33606 -15.97371 -15.78716 -15.59787 -15.24787 -14.88721 -14.72274 -14.59555 -14.42164 -14.25246 -13.96917 -13.81053 -13.46147 -13.26793 -13.20832 -12.91997 -12.68321 -12.56947 -12.36492 -12.27065 -12.07244 -11.84821 -11.54383 -11.36682 -11.07984 -10.94909 -10.91725 -10.89141 -10.43633 -10.02700 -9.95841 -9.30440 -9.12015 -8.41483 -6.52563 0.09242 0.28997 1.12547 1.32376 1.35557 1.45170 1.74643 1.86281 2.25000 2.90589 2.98979 3.34687 3.49339 3.64454 3.78270 3.81829 3.88916 3.99057 4.04151 4.08825 4.18691 4.19572 4.25814 4.32965 4.46403 4.55723 4.61712 4.66647 4.67801 4.83773 4.87208 4.90356 4.90872 4.96568 4.97825 5.04004 5.07683 5.11496 5.17682 5.19928 5.22130 5.42588 5.46166 5.67510 5.71603 5.80125 5.93208 6.23080 6.35633 6.53149 6.55746 6.88555 7.06342 7.10656 8.75745 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003293 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.998458 B = 8500.291027 C =10560.361048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.548 4.548 8 H 0.024 0.976 9 C 0.239 3.761 10 N -0.346 5.346 11 C 0.054 3.946 12 C -0.234 4.234 13 C 0.150 3.850 14 N -0.689 5.689 15 C 0.074 3.926 16 C -0.107 4.107 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.131 4.131 20 C 0.089 3.911 21 C 0.043 3.957 22 C -0.146 4.146 23 C 0.099 3.901 24 N -0.504 5.504 25 C 0.098 3.902 26 C -0.165 4.165 27 N -0.316 5.316 28 H 0.273 0.727 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.205 0.795 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.338 0.662 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.148 0.852 45 H 0.187 0.813 46 H 0.179 0.821 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.120 -13.542 -3.999 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.246 4.246 13 C 0.021 3.979 14 N -0.320 5.320 15 C -0.055 4.055 16 C -0.126 4.126 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.169 4.169 20 C -0.075 4.075 21 C 0.033 3.967 22 C -0.167 4.167 23 C -0.057 4.057 24 N -0.214 5.214 25 C -0.058 4.058 26 C -0.186 4.186 27 N -0.139 5.139 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.221 0.779 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.166 0.834 45 H 0.204 0.796 46 H 0.196 0.804 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.784 -13.998 -2.381 25.171 hybrid contribution 0.202 2.215 -1.386 2.621 sum 20.986 -11.783 -3.767 24.361 Atomic orbital electron populations 1.70056 1.08626 1.28869 1.50475 1.25940 0.95763 1.03593 0.93150 0.85610 0.79432 0.77155 0.80139 1.17517 1.20663 1.16338 1.21208 0.90504 0.93673 1.53263 0.95745 1.19858 0.94122 0.74646 0.99500 1.48794 1.33498 1.10397 1.19881 1.22963 0.94998 0.94743 0.96631 1.20042 1.08755 0.95343 1.00487 1.20092 0.88805 0.96157 0.92871 1.60488 1.05874 1.20246 1.45407 1.21943 0.91838 0.97324 0.94406 1.22503 0.92790 0.97466 0.99811 1.23028 0.96485 0.96491 1.01832 1.22821 0.96703 0.96560 1.01729 1.22898 0.95344 0.97630 1.01021 1.20798 0.97655 0.92492 0.96532 1.18239 0.95645 0.89990 0.92837 1.22236 1.00713 0.91693 1.02020 1.23090 0.94476 0.98430 0.89689 1.67680 1.12934 1.31514 1.09303 1.22928 0.94855 0.86716 1.01336 1.22259 1.01894 1.00214 0.94253 1.77667 1.23170 0.97157 1.15920 0.91828 0.93861 0.90159 0.77865 0.90152 0.93263 0.84417 0.91060 0.94611 0.90125 0.89993 0.92231 0.90322 0.90896 0.91362 0.89456 0.83429 0.79569 0.80436 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.96 40.36 27.47 68.60 1.88 42.25 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.55 -31.52 9.79 25.60 0.25 -31.27 16 8 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 9 C 0.24 10.82 5.33 85.63 0.46 11.28 16 10 N -0.35 -14.82 3.67 -351.90 -1.29 -16.11 16 11 C 0.05 1.78 11.32 83.47 0.94 2.72 16 12 C -0.23 -7.24 5.56 -19.95 -0.11 -7.35 16 13 C 0.15 3.34 5.71 85.56 0.49 3.83 16 14 N -0.69 -14.30 6.52 -517.95 -3.38 -17.68 16 15 C 0.07 1.19 5.50 86.30 0.47 1.66 16 16 C -0.11 -1.64 3.89 -10.27 -0.04 -1.68 16 17 C -0.14 -1.98 7.65 31.18 0.24 -1.75 16 18 C -0.14 -1.74 8.09 31.18 0.25 -1.48 16 19 C -0.13 -1.63 7.65 31.12 0.24 -1.39 16 20 C 0.09 3.34 6.72 42.52 0.29 3.63 16 21 C 0.04 1.40 5.77 -19.84 -0.11 1.29 16 22 C -0.15 -3.85 9.01 22.57 0.20 -3.65 16 23 C 0.10 2.36 11.17 84.61 0.95 3.31 16 24 N -0.50 -13.62 10.35 -196.14 -2.03 -15.65 16 25 C 0.10 2.60 11.17 84.61 0.95 3.55 16 26 C -0.17 -5.13 9.89 22.57 0.22 -4.91 16 27 N -0.32 -14.51 12.44 -48.16 -0.60 -15.11 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 29 H 0.04 1.95 7.20 -2.39 -0.02 1.93 16 30 H 0.08 3.10 7.50 -2.39 -0.02 3.08 16 31 H 0.20 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.08 1.72 5.81 -2.39 -0.01 1.70 16 33 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.34 7.26 8.66 -89.69 -0.78 6.49 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.53 7.88 -2.39 -0.02 0.51 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.08 7.92 -2.39 -0.02 1.06 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 44 H 0.15 3.36 6.30 -2.91 -0.02 3.34 16 45 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 47 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -73.25 389.75 1.17 -72.08 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.14 Total: 28.94 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 6.14 Total: -20.93 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -7.00 Total: -122.34 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.88 Total: 42.25 kcal Total: -73.25 1.17 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278560930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.544 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds