Wall clock time and date at job start Tue Mar 31 2020 14:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53775 * 113.61640 * 2 1 4 4 C 1.53783 * 87.08109 * 89.20340 * 3 2 1 5 5 N 1.46898 * 113.61429 * 139.98134 * 4 3 2 6 6 C 1.46899 * 110.99759 * 154.99988 * 5 4 3 7 7 C 1.50698 * 109.47008 * 184.71271 * 6 5 4 8 8 C 1.35071 * 126.07252 * 105.36895 * 7 6 5 9 9 N 1.35049 * 107.98629 * 180.14360 * 8 7 6 10 10 C 1.46500 * 125.93088 * 179.86891 * 9 8 7 11 11 C 1.50696 * 109.47114 * 124.72060 * 10 9 8 12 12 H 1.08001 * 120.00337 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46908 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47353 * 120.00070 * 15 13 11 18 18 H 1.48502 * 109.47369 * 240.00377 * 15 13 11 19 19 N 1.40073 * 108.14176 * 359.61468 * 9 8 7 20 20 C 1.31646 * 108.10042 * 0.23501 * 19 9 8 21 21 C 1.48375 * 126.03885 * 180.02562 * 20 19 9 22 22 C 1.39765 * 120.90262 * 137.13229 * 21 20 19 23 23 C 1.37965 * 119.02104 * 179.72548 * 22 21 20 24 24 N 1.31931 * 120.87454 * 0.56090 * 23 22 21 25 25 C 1.31934 * 122.00815 * 359.71168 * 24 23 22 26 26 C 1.37963 * 120.88220 * 0.02562 * 25 24 23 27 27 C 1.53773 * 113.69475 * 97.54022 * 2 1 3 28 28 H 1.09004 * 109.47096 * 59.99829 * 1 2 3 29 29 H 1.09004 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46893 * 299.99505 * 1 2 3 31 31 H 1.09000 * 112.84734 * 228.80661 * 2 1 3 32 32 H 1.08999 * 113.61752 * 334.65549 * 3 2 1 33 33 H 1.09005 * 113.61694 * 203.75441 * 3 2 1 34 34 H 1.08998 * 113.61110 * 270.80139 * 4 3 2 35 35 H 1.00896 * 110.99882 * 31.04755 * 5 4 3 36 36 H 1.09007 * 109.47055 * 64.71591 * 6 5 4 37 37 H 1.08995 * 109.47412 * 304.71744 * 6 5 4 38 38 H 1.07997 * 126.00774 * 359.97438 * 8 7 6 39 39 H 1.09000 * 109.47595 * 244.72273 * 10 9 8 40 40 H 1.09006 * 109.47111 * 4.72320 * 10 9 8 41 41 H 0.97001 * 119.99834 * 180.02562 * 14 13 11 42 42 H 1.08001 * 120.49265 * 359.97438 * 22 21 20 43 43 H 1.07998 * 119.56316 * 180.24720 * 23 22 21 44 44 H 1.08000 * 119.56162 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.49185 * 180.02562 * 26 25 24 46 46 H 1.08996 * 113.62038 * 156.31988 * 27 2 1 47 47 H 1.09006 * 113.61391 * 25.42119 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 1.5357 5 7 3.2803 1.9184 2.1878 6 6 2.9638 2.3750 3.5477 7 6 4.1685 3.0588 4.1411 8 6 4.3241 4.3897 4.3115 9 7 5.5361 4.5999 4.8688 10 6 6.1067 5.9028 5.2195 11 6 6.4952 5.9055 6.6755 12 1 6.3330 5.0250 7.2795 13 6 7.0570 7.0326 7.2371 14 7 7.2532 8.1054 6.5022 15 14 7.5379 7.0362 9.0421 16 1 7.2143 5.7174 9.6432 17 1 8.9954 7.2928 9.1655 18 1 6.7858 8.1014 9.7527 19 7 6.1506 3.3555 5.0588 20 6 5.3302 2.4233 4.6217 21 6 5.5841 0.9615 4.6338 22 6 4.5843 0.0624 5.0152 23 6 4.8609 -1.2892 5.0068 24 7 6.0523 -1.7343 4.6558 25 6 7.0248 -0.9192 4.2945 26 6 6.8315 0.4466 4.2699 27 6 2.1479 -0.1848 1.3959 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.9532 -0.6616 -0.7559 32 1 1.4940 2.1706 -0.4275 33 1 3.1585 1.4429 -0.4023 34 1 1.1601 1.7151 1.9571 35 1 3.6697 2.6681 1.6362 36 1 2.6918 1.5184 4.1645 37 1 2.1297 3.0756 3.5109 38 1 3.6065 5.1519 4.0459 39 1 6.9892 6.0897 4.6077 40 1 5.3676 6.6836 5.0393 41 1 7.6487 8.8982 6.8971 42 1 3.6084 0.4201 5.3085 43 1 4.0936 -1.9919 5.2960 44 1 7.9849 -1.3265 4.0143 45 1 7.6319 1.1080 3.9727 46 1 3.1609 -0.5866 1.3754 47 1 1.4974 -0.7098 2.0954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278614242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:33 Heat of formation + Delta-G solvation = 122.866734 kcal Electronic energy + Delta-G solvation = -26993.048651 eV Core-core repulsion = 23370.553584 eV Total energy + Delta-G solvation = -3622.495067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77420 -39.51248 -39.43366 -35.04326 -33.83071 -32.87515 -31.08105 -30.90574 -30.12860 -28.54577 -27.19824 -25.81869 -24.57964 -24.20455 -23.15811 -22.45238 -21.99126 -20.08261 -19.51358 -18.67607 -16.80086 -16.70536 -16.28039 -15.83043 -15.68654 -15.44647 -15.10870 -14.87008 -14.36185 -14.20142 -13.75244 -13.59524 -13.51625 -13.36829 -13.26626 -13.12252 -12.52186 -12.38886 -12.29668 -12.26054 -12.00767 -11.69211 -11.32599 -11.27212 -11.08405 -10.96912 -10.83779 -10.44903 -10.34239 -10.29152 -10.03954 -9.91597 -9.42199 -9.31076 -8.93564 -8.72328 -8.47480 -8.30325 -7.74388 -6.33027 -4.38438 1.31388 1.38550 2.59973 3.16027 3.17666 3.25661 3.30152 3.39737 4.12220 4.24847 4.36622 4.40717 4.46947 4.62588 4.71161 4.76765 4.80395 5.02636 5.05122 5.21304 5.22577 5.29874 5.33130 5.40022 5.42896 5.52344 5.55418 5.59446 5.69948 5.71765 5.73401 5.83411 5.92600 5.94166 5.98170 6.13409 6.17251 6.21802 6.29078 6.45437 6.54173 6.82047 6.89305 6.92775 7.13324 7.23155 7.47506 7.60284 7.76295 7.85290 8.15717 8.41090 8.70194 9.28113 10.75963 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003166 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.057319 B = 8841.676846 C =10518.213107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.140 4.140 4 C 0.061 3.939 5 N -0.671 5.671 6 C 0.144 3.856 7 C -0.246 4.246 8 C 0.055 3.945 9 N -0.318 5.318 10 C 0.255 3.745 11 C -0.530 4.530 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.281 1.281 19 N -0.258 5.258 20 C 0.084 3.916 21 C 0.070 3.930 22 C -0.147 4.147 23 C 0.094 3.906 24 N -0.494 5.494 25 C 0.094 3.906 26 C -0.151 4.151 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.341 0.659 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.165 0.835 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.268 0.732 42 H 0.132 0.868 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -14.154 -11.090 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.178 4.178 4 C -0.049 4.049 5 N -0.302 5.302 6 C 0.014 3.986 7 C -0.259 4.259 8 C -0.095 4.095 9 N -0.097 5.097 10 C 0.138 3.862 11 C -0.569 4.569 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.207 1.207 19 N -0.083 5.083 20 C -0.079 4.079 21 C 0.060 3.940 22 C -0.169 4.169 23 C -0.062 4.062 24 N -0.203 5.203 25 C -0.062 4.062 26 C -0.172 4.172 27 C -0.158 4.158 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.182 0.818 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.150 0.850 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.152 0.848 46 H 0.105 0.895 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.868 -15.000 -10.278 20.689 hybrid contribution -1.139 2.051 0.386 2.378 sum -11.007 -12.949 -9.892 19.665 Atomic orbital electron populations 1.21599 0.94159 1.01679 1.01712 1.22201 0.95462 0.97469 0.98582 1.23261 1.01434 0.97074 0.96064 1.23021 0.92490 0.96136 0.93293 1.60685 1.28365 1.38073 1.03058 1.20147 0.92361 0.96916 0.89149 1.19621 0.98880 0.91959 1.15403 1.22261 0.90521 0.96879 0.99865 1.49426 1.11324 1.07174 1.41802 1.19803 0.95278 0.73235 0.97869 1.21263 1.42119 0.99948 0.93548 0.91214 1.24942 0.94990 0.94941 0.99107 1.69923 1.43516 1.03356 1.36434 0.86270 0.78358 0.78304 0.83611 1.19480 1.20570 1.20703 1.77691 1.20716 0.88571 1.21319 1.20258 0.93722 0.91911 1.02045 1.18048 0.93037 0.89275 0.93651 1.22056 0.99926 0.93877 1.01007 1.22508 0.94020 0.93385 0.96321 1.67572 1.01071 1.40330 1.11376 1.22559 0.97825 0.89736 0.96077 1.22212 0.97414 0.96704 1.00835 1.23065 1.01246 0.96021 0.95475 0.92615 0.92519 0.92578 0.90723 0.91824 0.89544 0.91352 0.83996 0.90836 0.95182 0.81778 0.93481 0.92632 0.92282 0.85008 0.83161 0.83052 0.84792 0.89451 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.59 37.16 0.36 -0.59 16 2 C -0.12 -0.96 4.54 -89.82 -0.41 -1.37 16 3 C -0.14 -1.22 7.24 -25.92 -0.19 -1.41 16 4 C 0.06 0.59 3.79 -66.90 -0.25 0.33 16 5 N -0.67 -7.85 6.58 -107.13 -0.70 -8.56 16 6 C 0.14 1.82 5.59 -4.98 -0.03 1.79 16 7 C -0.25 -4.01 5.56 -104.76 -0.58 -4.59 16 8 C 0.05 0.97 11.32 -17.26 -0.20 0.77 16 9 N -0.32 -6.90 3.67 -62.58 -0.23 -7.13 16 10 C 0.26 6.23 6.26 -5.20 -0.03 6.20 16 11 C -0.53 -14.41 9.23 -34.44 -0.32 -14.73 16 12 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 15 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 N -0.26 -5.71 12.44 33.42 0.42 -5.29 16 20 C 0.08 1.55 6.72 -82.78 -0.56 0.99 16 21 C 0.07 1.13 5.77 -104.58 -0.60 0.53 16 22 C -0.15 -2.04 9.01 -39.11 -0.35 -2.39 16 23 C 0.09 1.21 11.17 -17.61 -0.20 1.01 16 24 N -0.49 -7.02 10.35 -13.35 -0.14 -7.16 16 25 C 0.09 1.29 11.17 -17.61 -0.20 1.09 16 26 C -0.15 -2.29 9.89 -39.11 -0.39 -2.68 16 27 C -0.12 -1.13 7.45 -25.92 -0.19 -1.33 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 7.35 -51.93 -0.38 0.02 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.65 7.32 -51.93 -0.38 0.27 16 35 H 0.34 4.08 8.47 -39.29 -0.33 3.75 16 36 H 0.07 0.91 5.81 -51.92 -0.30 0.61 16 37 H 0.03 0.35 8.02 -51.93 -0.42 -0.07 16 38 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.13 1.64 6.30 -52.49 -0.33 1.31 16 43 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -29.65 391.68 -10.45 -40.10 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.18 Total: 4.86 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -4.23 Total: -14.74 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.08 Total: -52.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.65 -10.45 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278614242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.967 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds