Wall clock time and date at job start Tue Mar 31 2020 14:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53775 * 113.61640 * 2 1 4 4 C 1.53783 * 87.08109 * 89.20340 * 3 2 1 5 5 N 1.46898 * 113.61429 * 139.98134 * 4 3 2 6 6 C 1.46899 * 110.99759 * 154.99988 * 5 4 3 7 7 C 1.50698 * 109.47008 * 184.71271 * 6 5 4 8 8 C 1.35071 * 126.07252 * 105.36895 * 7 6 5 9 9 N 1.35049 * 107.98629 * 180.14360 * 8 7 6 10 10 C 1.46500 * 125.93088 * 179.86891 * 9 8 7 11 11 C 1.50696 * 109.47114 * 124.72060 * 10 9 8 12 12 H 1.08001 * 120.00337 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46908 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47353 * 120.00070 * 15 13 11 18 18 H 1.48502 * 109.47369 * 240.00377 * 15 13 11 19 19 N 1.40073 * 108.14176 * 359.61468 * 9 8 7 20 20 C 1.31646 * 108.10042 * 0.23501 * 19 9 8 21 21 C 1.48375 * 126.03885 * 180.02562 * 20 19 9 22 22 C 1.39765 * 120.90262 * 137.13229 * 21 20 19 23 23 C 1.37965 * 119.02104 * 179.72548 * 22 21 20 24 24 N 1.31931 * 120.87454 * 0.56090 * 23 22 21 25 25 C 1.31934 * 122.00815 * 359.71168 * 24 23 22 26 26 C 1.37963 * 120.88220 * 0.02562 * 25 24 23 27 27 C 1.53773 * 113.69475 * 97.54022 * 2 1 3 28 28 H 1.09004 * 109.47096 * 59.99829 * 1 2 3 29 29 H 1.09004 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46893 * 299.99505 * 1 2 3 31 31 H 1.09000 * 112.84734 * 228.80661 * 2 1 3 32 32 H 1.08999 * 113.61752 * 334.65549 * 3 2 1 33 33 H 1.09005 * 113.61694 * 203.75441 * 3 2 1 34 34 H 1.08998 * 113.61110 * 270.80139 * 4 3 2 35 35 H 1.00896 * 110.99882 * 31.04755 * 5 4 3 36 36 H 1.09007 * 109.47055 * 64.71591 * 6 5 4 37 37 H 1.08995 * 109.47412 * 304.71744 * 6 5 4 38 38 H 1.07997 * 126.00774 * 359.97438 * 8 7 6 39 39 H 1.09000 * 109.47595 * 244.72273 * 10 9 8 40 40 H 1.09006 * 109.47111 * 4.72320 * 10 9 8 41 41 H 0.97001 * 119.99834 * 180.02562 * 14 13 11 42 42 H 1.08001 * 120.49265 * 359.97438 * 22 21 20 43 43 H 1.07998 * 119.56316 * 180.24720 * 23 22 21 44 44 H 1.08000 * 119.56162 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.49185 * 180.02562 * 26 25 24 46 46 H 1.08996 * 113.62038 * 156.31988 * 27 2 1 47 47 H 1.09006 * 113.61391 * 25.42119 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 1.5357 5 7 3.2803 1.9184 2.1878 6 6 2.9638 2.3750 3.5477 7 6 4.1685 3.0588 4.1411 8 6 4.3241 4.3897 4.3115 9 7 5.5361 4.5999 4.8688 10 6 6.1067 5.9028 5.2195 11 6 6.4952 5.9055 6.6755 12 1 6.3330 5.0250 7.2795 13 6 7.0570 7.0326 7.2371 14 7 7.2532 8.1054 6.5022 15 14 7.5379 7.0362 9.0421 16 1 7.2143 5.7174 9.6432 17 1 8.9954 7.2928 9.1655 18 1 6.7858 8.1014 9.7527 19 7 6.1506 3.3555 5.0588 20 6 5.3302 2.4233 4.6217 21 6 5.5841 0.9615 4.6338 22 6 4.5843 0.0624 5.0152 23 6 4.8609 -1.2892 5.0068 24 7 6.0523 -1.7343 4.6558 25 6 7.0248 -0.9192 4.2945 26 6 6.8315 0.4466 4.2699 27 6 2.1479 -0.1848 1.3959 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.9532 -0.6616 -0.7559 32 1 1.4940 2.1706 -0.4275 33 1 3.1585 1.4429 -0.4023 34 1 1.1601 1.7151 1.9571 35 1 3.6697 2.6681 1.6362 36 1 2.6918 1.5184 4.1645 37 1 2.1297 3.0756 3.5109 38 1 3.6065 5.1519 4.0459 39 1 6.9892 6.0897 4.6077 40 1 5.3676 6.6836 5.0393 41 1 7.6487 8.8982 6.8971 42 1 3.6084 0.4201 5.3085 43 1 4.0936 -1.9919 5.2960 44 1 7.9849 -1.3265 4.0143 45 1 7.6319 1.1080 3.9727 46 1 3.1609 -0.5866 1.3754 47 1 1.4974 -0.7098 2.0954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278614242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:32 Heat of formation + Delta-G solvation = 105.898158 kcal Electronic energy + Delta-G solvation = -26993.784464 eV Core-core repulsion = 23370.553584 eV Total energy + Delta-G solvation = -3623.230880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18691 -40.65661 -40.18362 -36.29797 -35.37522 -34.39793 -32.44619 -32.15882 -31.33501 -29.59341 -28.67522 -26.56253 -25.88090 -25.63700 -24.26193 -23.63487 -23.07306 -21.50320 -20.85117 -19.41849 -18.70534 -18.07225 -17.29394 -17.06429 -16.90631 -16.54769 -16.36062 -15.88243 -15.85270 -15.57659 -14.86042 -14.67382 -14.64136 -14.37370 -14.26206 -14.22914 -14.04733 -13.63784 -13.61219 -13.15678 -13.08060 -12.98469 -12.83603 -12.69047 -12.45341 -12.26817 -11.99990 -11.80788 -11.65084 -11.55908 -11.09131 -10.96141 -10.86032 -10.75916 -10.42225 -10.01386 -9.93815 -9.29831 -9.12480 -8.38875 -6.52536 0.10775 0.30275 1.14825 1.32950 1.35500 1.47674 1.77398 1.88204 2.30770 2.93407 3.00343 3.41980 3.52633 3.65527 3.70732 3.78001 3.85750 4.02229 4.05127 4.09908 4.19961 4.26384 4.27923 4.35544 4.55465 4.62226 4.66914 4.69974 4.83275 4.86208 4.88691 4.94729 4.95805 5.02527 5.03045 5.08760 5.13380 5.16685 5.21082 5.27984 5.45555 5.52306 5.53741 5.61405 5.70521 5.80495 5.81829 6.19887 6.33755 6.53549 6.59080 6.92783 7.07639 7.17951 8.69330 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003166 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.057319 B = 8841.676846 C =10518.213107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C -0.138 4.138 4 C 0.061 3.939 5 N -0.678 5.678 6 C 0.151 3.849 7 C -0.234 4.234 8 C 0.051 3.949 9 N -0.345 5.345 10 C 0.272 3.728 11 C -0.547 4.547 12 H 0.049 0.951 13 C 0.020 3.980 14 N -0.919 5.919 15 Si 0.969 3.031 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.267 1.267 19 N -0.314 5.314 20 C 0.089 3.911 21 C 0.045 3.955 22 C -0.144 4.144 23 C 0.100 3.900 24 N -0.504 5.504 25 C 0.098 3.902 26 C -0.165 4.165 27 C -0.119 4.119 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.338 0.662 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.195 0.805 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.273 0.727 42 H 0.147 0.853 43 H 0.187 0.813 44 H 0.178 0.822 45 H 0.124 0.876 46 H 0.069 0.931 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 -15.757 -11.123 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.048 4.048 5 N -0.309 5.309 6 C 0.022 3.978 7 C -0.246 4.246 8 C -0.098 4.098 9 N -0.125 5.125 10 C 0.153 3.847 11 C -0.585 4.585 12 H 0.068 0.932 13 C -0.180 4.180 14 N -0.558 5.558 15 Si 0.793 3.207 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.192 1.192 19 N -0.138 5.138 20 C -0.075 4.075 21 C 0.035 3.965 22 C -0.165 4.165 23 C -0.056 4.056 24 N -0.214 5.214 25 C -0.058 4.058 26 C -0.186 4.186 27 C -0.158 4.158 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.212 0.788 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.165 0.835 43 H 0.203 0.797 44 H 0.195 0.805 45 H 0.142 0.858 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.893 -16.614 -10.332 22.896 hybrid contribution -0.552 2.410 0.323 2.493 sum -12.445 -14.204 -10.009 21.373 Atomic orbital electron populations 1.21591 0.93006 1.02253 1.02076 1.22193 0.96297 0.96912 0.97711 1.23229 1.01243 0.97793 0.95308 1.23087 0.91910 0.96089 0.93732 1.60656 1.29629 1.37949 1.02700 1.20145 0.90874 0.97214 0.89593 1.20017 0.99274 0.91364 1.13940 1.22877 0.89602 0.98425 0.98859 1.49107 1.12877 1.06283 1.44268 1.19306 0.94385 0.75011 0.96001 1.21392 1.42825 0.99435 0.94886 0.93223 1.25707 0.94705 0.94513 1.03098 1.69991 1.43886 1.03846 1.38056 0.85338 0.78357 0.78161 0.78816 1.20105 1.19870 1.19224 1.77607 1.22890 0.89347 1.24004 1.20781 0.93753 0.92682 1.00281 1.18213 0.94351 0.88389 0.95543 1.22216 0.99890 0.93972 1.00394 1.23067 0.94265 0.93545 0.94709 1.67679 1.01651 1.40438 1.11596 1.22913 0.98854 0.88920 0.95115 1.22249 0.97069 0.97530 1.01795 1.23011 1.00471 0.95738 0.96555 0.91975 0.91884 0.92489 0.90673 0.90998 0.90413 0.90471 0.84318 0.90093 0.93488 0.78836 0.96237 0.92455 0.91771 0.83526 0.79657 0.80501 0.85820 0.91259 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.59 71.98 0.69 -0.82 16 2 C -0.11 -1.60 4.54 -10.27 -0.05 -1.64 16 3 C -0.14 -2.14 7.24 31.12 0.23 -1.92 16 4 C 0.06 1.06 3.79 45.44 0.17 1.23 16 5 N -0.68 -14.84 6.58 -492.86 -3.24 -18.08 16 6 C 0.15 3.52 5.59 85.56 0.48 4.00 16 7 C -0.23 -7.49 5.56 -19.95 -0.11 -7.60 16 8 C 0.05 1.79 11.32 83.47 0.94 2.73 16 9 N -0.35 -15.58 3.67 -351.92 -1.29 -16.87 16 10 C 0.27 13.88 6.26 85.63 0.54 14.41 16 11 C -0.55 -30.79 9.23 25.60 0.24 -30.55 16 12 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 13 C 0.02 1.12 5.46 84.65 0.46 1.58 16 14 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 15 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 N -0.31 -14.50 12.44 -48.17 -0.60 -15.10 16 20 C 0.09 3.34 6.72 42.52 0.29 3.62 16 21 C 0.05 1.45 5.77 -19.84 -0.11 1.34 16 22 C -0.14 -3.72 9.01 22.57 0.20 -3.52 16 23 C 0.10 2.32 11.17 84.61 0.95 3.27 16 24 N -0.50 -13.27 10.35 -196.14 -2.03 -15.30 16 25 C 0.10 2.56 11.17 84.61 0.95 3.51 16 26 C -0.17 -5.08 9.89 22.58 0.22 -4.85 16 27 C -0.12 -2.02 7.45 31.12 0.23 -1.79 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.65 7.35 -2.39 -0.02 0.63 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.24 7.32 -2.39 -0.02 1.22 16 35 H 0.34 7.75 8.47 -89.70 -0.76 6.99 16 36 H 0.08 1.79 5.81 -2.38 -0.01 1.78 16 37 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16 38 H 0.19 5.39 8.06 -2.91 -0.02 5.37 16 39 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 2.85 8.07 -2.38 -0.02 2.83 16 41 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.15 3.28 6.30 -2.91 -0.02 3.27 16 43 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 44 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 Total: -1.00 -65.66 391.68 1.67 -63.99 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.21 Total: 24.10 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 6.31 Total: -17.00 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -6.88 Total: -116.85 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.66 1.67 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278614242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.886 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds