Wall clock time and date at job start Tue Mar 31 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48503 * 109.46763 * 239.99380 * 3 2 1 5 5 H 1.48493 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46775 * 120.00039 * 3 2 1 7 7 C 1.37873 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00398 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.35058 * 125.92562 * 125.30464 * 10 9 7 12 12 C 1.35064 * 107.98836 * 180.11275 * 11 10 9 13 13 C 1.50699 * 126.07912 * 179.87271 * 12 11 10 14 14 N 1.46900 * 109.47330 * 105.71315 * 13 12 11 15 15 C 1.46898 * 111.00265 * 174.80187 * 14 13 12 16 16 C 1.54963 * 110.92551 * 91.53738 * 15 14 13 17 17 C 1.54263 * 104.16026 * 156.29764 * 16 15 14 18 18 C 1.53876 * 106.64196 * 336.45009 * 17 16 15 19 19 C 1.54270 * 106.59672 * 359.97147 * 18 17 16 20 20 C 1.40872 * 107.84794 * 359.61170 * 12 11 10 21 21 C 1.48370 * 126.03840 * 180.24687 * 20 12 11 22 22 C 1.39764 * 120.90262 * 316.89918 * 21 20 12 23 23 C 1.37962 * 119.02117 * 179.78036 * 22 21 20 24 24 N 1.31938 * 120.87808 * 0.51433 * 23 22 21 25 25 C 1.31928 * 122.00445 * 359.73935 * 24 23 22 26 26 C 1.37963 * 120.88322 * 359.97438 * 25 24 23 27 27 N 1.31648 * 107.91875 * 0.23680 * 20 12 11 28 28 H 0.96993 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46614 * 60.00000 * 9 7 2 30 30 H 1.09000 * 109.46701 * 300.00192 * 9 7 2 31 31 H 1.08005 * 126.00528 * 359.96105 * 11 10 9 32 32 H 1.09006 * 109.46879 * 345.71773 * 13 12 11 33 33 H 1.08998 * 109.47303 * 225.71877 * 13 12 11 34 34 H 1.00897 * 111.00000 * 298.75648 * 14 13 12 35 35 H 1.09001 * 110.66690 * 328.23681 * 15 14 13 36 36 H 1.09003 * 110.47155 * 37.64401 * 16 15 14 37 37 H 1.08997 * 110.53268 * 274.98198 * 16 15 14 38 38 H 1.08998 * 110.03072 * 217.13897 * 17 16 15 39 39 H 1.08996 * 110.03097 * 95.75590 * 17 16 15 40 40 H 1.08991 * 110.03415 * 119.25804 * 18 17 16 41 41 H 1.09005 * 110.03047 * 240.64704 * 18 17 16 42 42 H 1.09005 * 110.48268 * 142.28486 * 19 18 17 43 43 H 1.08992 * 110.49064 * 264.79972 * 19 18 17 44 44 H 1.08001 * 120.49094 * 0.03069 * 22 21 20 45 45 H 1.07999 * 119.56295 * 180.22698 * 23 22 21 46 46 H 1.07998 * 119.55761 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.49448 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2377 -4.6257 0.8931 12 6 3.2571 -5.4447 0.5551 13 6 3.6629 -6.7022 1.2798 14 7 3.2459 -7.8741 0.4982 15 6 3.7327 -9.1167 1.1122 16 6 2.6852 -9.6948 2.0969 17 6 3.0243 -11.1979 2.1691 18 6 3.7728 -11.5437 0.8698 19 6 3.8622 -10.2386 0.0522 20 6 3.8698 -4.9179 -0.5989 21 6 5.0295 -5.5031 -1.3159 22 6 6.1280 -6.0065 -0.6136 23 6 7.1835 -6.5462 -1.3193 24 7 7.1688 -6.5812 -2.6382 25 6 6.1540 -6.1122 -3.3388 26 6 5.0555 -5.5608 -2.7122 27 7 3.2315 -3.8149 -0.9287 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 1.5694 -4.7564 1.7314 32 1 3.1831 -6.7285 2.2582 33 1 4.7455 -6.7158 1.4055 34 1 2.2436 -7.8952 0.3851 35 1 4.6847 -8.9495 1.6161 36 1 1.6768 -9.5493 1.7095 37 1 2.7879 -9.2329 3.0789 38 1 2.1082 -11.7844 2.2396 39 1 3.6614 -11.3960 3.0310 40 1 4.7734 -11.9087 1.1012 41 1 3.2203 -12.2985 0.3102 42 1 4.8236 -10.1728 -0.4574 43 1 3.0455 -10.1824 -0.6674 44 1 6.1486 -5.9773 0.4659 45 1 8.0351 -6.9411 -0.7854 46 1 6.1833 -6.1613 -4.4173 47 1 4.2281 -5.1791 -3.2919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278626317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:48 Heat of formation + Delta-G solvation = 94.931900 kcal Electronic energy + Delta-G solvation = -27039.652318 eV Core-core repulsion = 23415.945905 eV Total energy + Delta-G solvation = -3623.706413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75029 -39.50268 -38.58972 -34.93678 -33.82151 -32.86832 -31.08359 -30.90680 -30.07313 -28.82470 -27.79879 -26.52409 -24.22762 -24.04271 -23.10886 -22.02780 -20.66854 -20.39502 -20.01289 -19.40618 -16.82433 -16.66694 -16.10711 -15.94579 -15.79183 -15.49610 -15.30763 -14.78461 -14.39961 -14.09683 -13.85211 -13.59731 -13.52835 -13.40848 -13.26876 -13.07350 -12.48490 -12.35797 -12.24320 -11.84018 -11.65209 -11.52517 -11.33037 -11.24385 -11.19682 -11.03469 -10.87696 -10.74390 -10.59651 -10.32764 -10.07173 -9.96639 -9.43188 -9.31097 -8.93873 -8.70564 -8.45359 -8.24873 -7.72916 -6.31860 -4.37488 1.31831 1.38361 2.61840 3.16794 3.21597 3.25198 3.28671 3.39955 4.11606 4.23631 4.26565 4.49915 4.52713 4.62297 4.77188 4.82134 5.03305 5.05034 5.15841 5.21496 5.29119 5.30520 5.34910 5.39850 5.44367 5.46037 5.56027 5.62278 5.67575 5.70771 5.77170 5.87035 5.91292 5.94900 6.02135 6.10658 6.15413 6.18225 6.19998 6.46055 6.54628 6.83229 6.89361 6.93920 7.12052 7.22871 7.47516 7.60888 7.77419 7.87054 8.15550 8.42699 8.70496 9.28888 10.77076 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003262 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.822701 B = 8582.634832 C =10412.849453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.256 3.744 10 N -0.318 5.318 11 C 0.054 3.946 12 C -0.242 4.242 13 C 0.144 3.856 14 N -0.674 5.674 15 C 0.085 3.915 16 C -0.155 4.155 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.111 4.111 20 C 0.084 3.916 21 C 0.072 3.928 22 C -0.150 4.150 23 C 0.094 3.906 24 N -0.494 5.494 25 C 0.095 3.905 26 C -0.150 4.150 27 N -0.259 5.259 28 H 0.269 0.731 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.165 0.835 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.341 0.659 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -19.820 3.188 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.254 4.254 13 C 0.015 3.985 14 N -0.304 5.304 15 C -0.026 4.026 16 C -0.194 4.194 17 C -0.159 4.159 18 C -0.164 4.164 19 C -0.149 4.149 20 C -0.079 4.079 21 C 0.062 3.938 22 C -0.171 4.171 23 C -0.063 4.063 24 N -0.204 5.204 25 C -0.061 4.061 26 C -0.171 4.171 27 N -0.083 5.083 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.149 0.851 45 H 0.168 0.832 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.790 -18.838 1.484 20.439 hybrid contribution -1.208 0.656 1.939 2.377 sum 6.582 -18.182 3.422 19.637 Atomic orbital electron populations 1.69902 1.06060 1.27880 1.49413 1.24933 0.94988 0.99585 0.94407 0.86378 0.79408 0.81673 0.79045 1.19816 1.20963 1.19988 1.21184 0.93951 0.89283 1.52591 0.91320 1.19786 0.85660 0.81300 0.99352 1.49413 1.23184 1.19114 1.18049 1.22256 0.99860 0.90497 0.96986 1.19594 1.02715 1.01483 1.01646 1.20097 0.99716 0.86159 0.92520 1.60482 1.18354 1.00656 1.50910 1.22587 0.97373 0.89539 0.93062 1.23105 0.99879 0.96107 1.00324 1.22032 1.00022 0.96031 0.97833 1.22132 1.00205 0.97919 0.96144 1.22295 1.02254 0.92857 0.97512 1.20247 0.96943 0.94764 0.95992 1.18045 0.90633 0.92945 0.92188 1.22048 0.93903 0.99980 1.01166 1.22507 0.97361 0.96419 0.89990 1.67573 1.27465 1.16796 1.08563 1.22558 0.89079 0.94459 1.00045 1.22213 1.00192 1.00373 0.94366 1.77686 1.00727 1.16189 1.13741 0.92173 0.93534 0.92641 0.81805 0.95133 0.90887 0.84013 0.90137 0.91516 0.91919 0.92154 0.92081 0.92020 0.92041 0.91577 0.91374 0.85057 0.83178 0.83047 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.47 9.23 -34.44 -0.32 -14.79 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.26 6.27 6.26 -5.19 -0.03 6.23 16 10 N -0.32 -6.92 3.67 -62.58 -0.23 -7.15 16 11 C 0.05 0.96 11.32 -17.26 -0.20 0.76 16 12 C -0.24 -3.93 5.65 -104.76 -0.59 -4.52 16 13 C 0.14 1.79 5.58 -4.98 -0.03 1.76 16 14 N -0.67 -7.75 6.35 -105.85 -0.67 -8.42 16 15 C 0.08 0.81 3.22 -65.68 -0.21 0.60 16 16 C -0.15 -1.31 6.42 -25.03 -0.16 -1.47 16 17 C -0.12 -0.92 6.80 -25.61 -0.17 -1.09 16 18 C -0.13 -0.98 6.80 -25.61 -0.17 -1.16 16 19 C -0.11 -1.03 6.52 -25.07 -0.16 -1.20 16 20 C 0.08 1.55 6.72 -82.78 -0.56 0.99 16 21 C 0.07 1.16 5.77 -104.58 -0.60 0.56 16 22 C -0.15 -2.06 9.02 -39.11 -0.35 -2.41 16 23 C 0.09 1.20 11.17 -17.61 -0.20 1.00 16 24 N -0.49 -7.02 10.35 -13.35 -0.14 -7.16 16 25 C 0.09 1.30 11.17 -17.61 -0.20 1.10 16 26 C -0.15 -2.29 9.89 -39.11 -0.39 -2.68 16 27 N -0.26 -5.73 12.44 33.42 0.42 -5.31 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.16 2.37 8.06 -52.48 -0.42 1.94 16 32 H 0.03 0.35 8.13 -51.93 -0.42 -0.08 16 33 H 0.07 0.87 5.68 -51.93 -0.29 0.58 16 34 H 0.34 3.95 8.27 -39.29 -0.32 3.63 16 35 H 0.08 0.77 7.74 -51.93 -0.40 0.37 16 36 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.13 1.60 6.32 -52.49 -0.33 1.27 16 45 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -29.72 389.43 -10.70 -40.41 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.22 Total: 4.44 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -4.44 Total: -14.66 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.11 Total: -52.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.72 -10.70 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278626317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.344 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds