Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.54730 * 2 1 4 4 C 1.53076 * 117.51764 * 214.27963 * 2 1 3 5 5 C 1.53003 * 117.50142 * 145.66824 * 2 1 3 6 6 H 1.08999 * 117.50056 * 215.00509 * 5 2 1 7 7 N 1.46898 * 117.49627 * 0.02562 * 5 2 1 8 8 C 1.46906 * 110.99888 * 204.91246 * 7 5 2 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 5 10 10 C 1.35059 * 126.07318 * 260.02308 * 9 8 7 11 11 N 1.35054 * 107.98874 * 180.02562 * 10 9 8 12 12 C 1.46500 * 125.93399 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47216 * 124.99671 * 12 11 10 14 14 H 1.07998 * 120.00515 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00253 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99880 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 90.00383 * 17 15 13 19 19 H 1.48507 * 109.46978 * 210.00205 * 17 15 13 20 20 H 1.48498 * 109.46881 * 330.00226 * 17 15 13 21 21 N 1.40073 * 108.13677 * 359.97438 * 11 10 9 22 22 C 1.31648 * 108.10445 * 359.71924 * 21 11 10 23 23 C 1.48368 * 126.04207 * 180.25268 * 22 21 11 24 24 C 1.39775 * 120.89923 * 144.93102 * 23 22 21 25 25 C 1.37964 * 119.01303 * 179.77673 * 24 23 22 26 26 N 1.31931 * 120.88404 * 0.51206 * 25 24 23 27 27 C 1.31936 * 122.00622 * 359.74134 * 26 25 24 28 28 C 1.37959 * 120.87900 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47114 * 274.32814 * 1 2 3 30 30 H 1.08996 * 109.47267 * 34.33274 * 1 2 3 31 31 H 1.09002 * 109.46615 * 154.33068 * 1 2 3 32 32 H 1.09000 * 109.47201 * 205.66681 * 3 2 1 33 33 H 1.09001 * 109.47037 * 325.66837 * 3 2 1 34 34 H 1.09002 * 109.47164 * 85.66888 * 3 2 1 35 35 H 1.08995 * 117.49482 * 145.03417 * 4 2 1 36 36 H 1.08998 * 117.50908 * 359.97438 * 4 2 1 37 37 H 1.00904 * 110.99913 * 328.86312 * 7 5 2 38 38 H 1.09004 * 109.47040 * 299.99934 * 8 7 5 39 39 H 1.09000 * 109.47033 * 59.99886 * 8 7 5 40 40 H 1.08006 * 126.01306 * 0.02562 * 10 9 8 41 41 H 1.09004 * 109.47115 * 244.99906 * 12 11 10 42 42 H 1.08997 * 109.46901 * 4.99024 * 12 11 10 43 43 H 0.96998 * 120.00650 * 179.97438 * 16 15 13 44 44 H 1.07996 * 120.49176 * 0.02908 * 24 23 22 45 45 H 1.08001 * 119.55607 * 180.23016 * 25 24 23 46 46 H 1.07997 * 119.55981 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.48969 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1713 -0.8746 1.2689 7 7 1.3939 -2.1147 1.4436 8 6 2.1106 -2.7342 2.5663 9 6 1.2164 -3.7454 3.2364 10 6 0.5111 -3.5542 4.3722 11 7 -0.1606 -4.6942 4.6430 12 6 -1.0483 -4.9181 5.7867 13 6 -2.3985 -5.3705 5.2936 14 1 -2.5777 -5.4800 4.2342 15 6 -3.4055 -5.6438 6.1950 16 7 -4.5837 -6.0392 5.7647 17 14 -3.0958 -5.4538 8.0273 18 1 -3.4356 -4.0701 8.4459 19 1 -3.9414 -6.4189 8.7750 20 1 -1.6642 -5.7214 8.3177 21 7 0.1380 -5.6250 3.6397 22 6 0.9627 -5.0557 2.7859 23 6 1.5287 -5.6848 1.5672 24 6 1.7535 -4.9338 0.4100 25 6 2.2858 -5.5574 -0.6996 26 7 2.5718 -6.8452 -0.6806 27 6 2.3702 -7.5906 0.3892 28 6 1.8467 -7.0457 1.5434 29 1 -0.3633 0.0776 1.0248 30 1 -0.3633 0.8486 -0.5796 31 1 -0.3632 -0.9263 -0.4452 32 1 3.1822 1.3088 -0.4451 33 1 1.5808 2.0742 -0.5796 34 1 2.2765 1.7417 1.0247 35 1 3.1724 -0.8760 -1.2676 36 1 1.6124 -1.8600 -1.2673 37 1 0.5258 -1.7029 1.7518 38 1 3.0072 -3.2309 2.1953 39 1 2.3923 -1.9656 3.2860 40 1 0.4882 -2.6489 4.9607 41 1 -0.6217 -5.6852 6.4331 42 1 -1.1586 -3.9903 6.3480 43 1 -5.2920 -6.2318 6.3988 44 1 1.5178 -3.8801 0.3862 45 1 2.4665 -4.9846 -1.5972 46 1 2.6183 -8.6413 0.3609 47 1 1.6846 -7.6617 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278780507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = 135.409608 kcal Electronic energy + Delta-G solvation = -27161.156137 eV Core-core repulsion = 23539.204970 eV Total energy + Delta-G solvation = -3621.951168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85402 -39.47663 -38.89584 -34.94790 -33.72998 -32.80554 -31.14207 -30.92820 -30.02539 -28.78375 -27.88882 -27.47035 -24.50263 -24.09814 -23.08471 -21.83437 -21.40215 -20.09771 -19.61897 -19.00083 -17.15781 -16.73097 -16.01373 -15.84679 -15.65854 -15.35139 -15.14968 -14.60084 -14.32650 -14.14988 -13.88181 -13.53108 -13.39156 -13.28860 -13.17654 -13.13546 -12.67221 -12.61322 -12.43612 -12.35095 -12.12733 -11.98043 -11.66719 -11.32747 -11.28786 -11.09809 -10.82121 -10.59805 -10.41205 -10.10193 -9.85551 -9.76219 -9.50044 -9.27083 -8.88065 -8.84201 -8.49589 -8.28246 -7.82314 -6.30401 -4.33989 1.28628 1.44345 2.49052 3.07459 3.12695 3.15262 3.15707 3.28363 3.58580 4.05112 4.15605 4.22139 4.57742 4.68578 4.69239 4.74455 4.90076 4.92864 4.99478 5.10677 5.23145 5.32482 5.33605 5.42088 5.43063 5.48755 5.53499 5.60686 5.71439 5.73986 5.75391 5.78316 5.89140 5.93726 5.94988 6.00685 6.14092 6.19322 6.19961 6.34912 6.38675 6.52554 6.75125 6.96283 7.01577 7.06140 7.23602 7.32918 7.60487 8.20045 8.21945 8.33334 8.78761 9.23402 10.82099 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.003718 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.650599 B = 7529.850291 C = 9600.445282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.143 4.143 3 C -0.114 4.114 4 C -0.163 4.163 5 C 0.024 3.976 6 H 0.098 0.902 7 N -0.653 5.653 8 C 0.146 3.854 9 C -0.243 4.243 10 C 0.056 3.944 11 N -0.317 5.317 12 C 0.229 3.771 13 C -0.538 4.538 14 H 0.086 0.914 15 C 0.078 3.922 16 N -0.884 5.884 17 Si 0.872 3.128 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.251 5.251 22 C 0.089 3.911 23 C 0.047 3.953 24 C -0.155 4.155 25 C 0.086 3.914 26 N -0.493 5.493 27 C 0.087 3.913 28 C -0.151 4.151 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.348 0.652 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.166 0.834 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.269 0.731 44 H 0.174 0.826 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.541 11.523 -8.985 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.201 4.201 5 C -0.086 4.086 6 H 0.115 0.885 7 N -0.285 5.285 8 C 0.017 3.983 9 C -0.256 4.256 10 C -0.094 4.094 11 N -0.096 5.096 12 C 0.111 3.889 13 C -0.576 4.576 14 H 0.104 0.896 15 C -0.126 4.126 16 N -0.521 5.521 17 Si 0.698 3.302 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 N -0.075 5.075 22 C -0.074 4.074 23 C 0.037 3.963 24 C -0.176 4.176 25 C -0.070 4.070 26 N -0.203 5.203 27 C -0.069 4.069 28 C -0.173 4.173 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.184 0.816 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.191 0.809 45 H 0.168 0.832 46 H 0.169 0.831 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.045 9.475 -9.595 20.204 hybrid contribution -0.136 1.824 2.387 3.007 sum 14.909 11.300 -7.208 20.048 Atomic orbital electron populations 1.21268 0.91842 1.02378 1.01797 1.21883 0.95257 0.91217 1.06048 1.21353 0.99871 0.94302 1.01620 1.23446 1.01842 1.00364 0.94429 1.22545 0.97754 0.94693 0.93622 0.88453 1.60223 1.06985 1.31798 1.29524 1.20061 0.94794 0.93543 0.89880 1.19586 1.10283 0.96029 0.99715 1.22241 0.96042 0.92706 0.98419 1.48969 1.32990 1.07919 1.19757 1.20100 0.89603 0.98097 0.81125 1.21060 0.92624 1.47227 0.96665 0.89578 1.24823 0.94769 0.94209 0.98794 1.69864 1.02901 1.44204 1.35113 0.86923 0.79036 0.78797 0.85426 1.19700 1.20405 1.18917 1.77737 1.16068 1.15176 0.98509 1.20322 0.98796 0.93083 0.95218 1.18177 0.94642 0.92515 0.91008 1.23059 0.98354 1.04143 0.92060 1.22601 0.95963 0.90619 0.97859 1.67554 1.16736 1.07126 1.28868 1.22544 0.96287 0.99701 0.88383 1.22274 0.99656 0.95119 1.00207 0.92418 0.92305 0.91632 0.92569 0.92202 0.92532 0.89085 0.88223 0.83102 0.90574 0.94675 0.81643 0.93842 0.93432 0.92061 0.80891 0.83189 0.83096 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.79 37.16 0.33 -0.69 16 2 C -0.14 -1.19 2.70 -154.47 -0.42 -1.60 16 3 C -0.11 -0.81 9.85 37.16 0.37 -0.44 16 4 C -0.16 -1.38 9.75 -26.69 -0.26 -1.64 16 5 C 0.02 0.22 5.96 -67.71 -0.40 -0.18 16 6 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 7 N -0.65 -7.10 4.13 -107.98 -0.45 -7.54 16 8 C 0.15 1.74 4.96 -4.97 -0.02 1.72 16 9 C -0.24 -3.84 5.60 -104.76 -0.59 -4.43 16 10 C 0.06 0.93 11.33 -17.26 -0.20 0.74 16 11 N -0.32 -6.68 3.67 -62.59 -0.23 -6.91 16 12 C 0.23 5.19 5.33 -5.20 -0.03 5.17 16 13 C -0.54 -14.78 9.79 -34.44 -0.34 -15.12 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 16 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 17 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 21 N -0.25 -5.52 12.42 33.42 0.42 -5.11 16 22 C 0.09 1.65 6.78 -82.78 -0.56 1.09 16 23 C 0.05 0.77 5.83 -104.58 -0.61 0.16 16 24 C -0.16 -2.22 8.91 -39.11 -0.35 -2.57 16 25 C 0.09 1.16 11.17 -17.61 -0.20 0.96 16 26 N -0.49 -7.26 10.35 -13.35 -0.14 -7.40 16 27 C 0.09 1.23 11.17 -17.61 -0.20 1.03 16 28 C -0.15 -2.36 9.87 -39.11 -0.39 -2.75 16 29 H 0.06 0.52 7.59 -51.93 -0.39 0.12 16 30 H 0.06 0.47 7.92 -51.93 -0.41 0.05 16 31 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 33 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 36 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.35 3.97 7.19 -39.29 -0.28 3.69 16 38 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.17 2.17 8.06 -52.48 -0.42 1.74 16 41 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 42 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.17 2.32 4.86 -52.49 -0.26 2.07 16 45 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -31.11 388.68 -9.51 -40.62 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.12 Total: 7.36 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.96 Total: -16.50 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.38 Total: -52.30 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.11 -9.51 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278780507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.033 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds