Wall clock time and date at job start Tue Mar 31 2020 14:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.54730 * 2 1 4 4 C 1.53076 * 117.51764 * 214.27963 * 2 1 3 5 5 C 1.53003 * 117.50142 * 145.66824 * 2 1 3 6 6 H 1.08999 * 117.50056 * 215.00509 * 5 2 1 7 7 N 1.46898 * 117.49627 * 0.02562 * 5 2 1 8 8 C 1.46906 * 110.99888 * 204.91246 * 7 5 2 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 5 10 10 C 1.35059 * 126.07318 * 260.02308 * 9 8 7 11 11 N 1.35054 * 107.98874 * 180.02562 * 10 9 8 12 12 C 1.46500 * 125.93399 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47216 * 124.99671 * 12 11 10 14 14 H 1.07998 * 120.00515 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00253 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99880 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 90.00383 * 17 15 13 19 19 H 1.48507 * 109.46978 * 210.00205 * 17 15 13 20 20 H 1.48498 * 109.46881 * 330.00226 * 17 15 13 21 21 N 1.40073 * 108.13677 * 359.97438 * 11 10 9 22 22 C 1.31648 * 108.10445 * 359.71924 * 21 11 10 23 23 C 1.48368 * 126.04207 * 180.25268 * 22 21 11 24 24 C 1.39775 * 120.89923 * 144.93102 * 23 22 21 25 25 C 1.37964 * 119.01303 * 179.77673 * 24 23 22 26 26 N 1.31931 * 120.88404 * 0.51206 * 25 24 23 27 27 C 1.31936 * 122.00622 * 359.74134 * 26 25 24 28 28 C 1.37959 * 120.87900 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47114 * 274.32814 * 1 2 3 30 30 H 1.08996 * 109.47267 * 34.33274 * 1 2 3 31 31 H 1.09002 * 109.46615 * 154.33068 * 1 2 3 32 32 H 1.09000 * 109.47201 * 205.66681 * 3 2 1 33 33 H 1.09001 * 109.47037 * 325.66837 * 3 2 1 34 34 H 1.09002 * 109.47164 * 85.66888 * 3 2 1 35 35 H 1.08995 * 117.49482 * 145.03417 * 4 2 1 36 36 H 1.08998 * 117.50908 * 359.97438 * 4 2 1 37 37 H 1.00904 * 110.99913 * 328.86312 * 7 5 2 38 38 H 1.09004 * 109.47040 * 299.99934 * 8 7 5 39 39 H 1.09000 * 109.47033 * 59.99886 * 8 7 5 40 40 H 1.08006 * 126.01306 * 0.02562 * 10 9 8 41 41 H 1.09004 * 109.47115 * 244.99906 * 12 11 10 42 42 H 1.08997 * 109.46901 * 4.99024 * 12 11 10 43 43 H 0.96998 * 120.00650 * 179.97438 * 16 15 13 44 44 H 1.07996 * 120.49176 * 0.02908 * 24 23 22 45 45 H 1.08001 * 119.55607 * 180.23016 * 25 24 23 46 46 H 1.07997 * 119.55981 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.48969 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1713 -0.8746 1.2689 7 7 1.3939 -2.1147 1.4436 8 6 2.1106 -2.7342 2.5663 9 6 1.2164 -3.7454 3.2364 10 6 0.5111 -3.5542 4.3722 11 7 -0.1606 -4.6942 4.6430 12 6 -1.0483 -4.9181 5.7867 13 6 -2.3985 -5.3705 5.2936 14 1 -2.5777 -5.4800 4.2342 15 6 -3.4055 -5.6438 6.1950 16 7 -4.5837 -6.0392 5.7647 17 14 -3.0958 -5.4538 8.0273 18 1 -3.4356 -4.0701 8.4459 19 1 -3.9414 -6.4189 8.7750 20 1 -1.6642 -5.7214 8.3177 21 7 0.1380 -5.6250 3.6397 22 6 0.9627 -5.0557 2.7859 23 6 1.5287 -5.6848 1.5672 24 6 1.7535 -4.9338 0.4100 25 6 2.2858 -5.5574 -0.6996 26 7 2.5718 -6.8452 -0.6806 27 6 2.3702 -7.5906 0.3892 28 6 1.8467 -7.0457 1.5434 29 1 -0.3633 0.0776 1.0248 30 1 -0.3633 0.8486 -0.5796 31 1 -0.3632 -0.9263 -0.4452 32 1 3.1822 1.3088 -0.4451 33 1 1.5808 2.0742 -0.5796 34 1 2.2765 1.7417 1.0247 35 1 3.1724 -0.8760 -1.2676 36 1 1.6124 -1.8600 -1.2673 37 1 0.5258 -1.7029 1.7518 38 1 3.0072 -3.2309 2.1953 39 1 2.3923 -1.9656 3.2860 40 1 0.4882 -2.6489 4.9607 41 1 -0.6217 -5.6852 6.4331 42 1 -1.1586 -3.9903 6.3480 43 1 -5.2920 -6.2318 6.3988 44 1 1.5178 -3.8801 0.3862 45 1 2.4665 -4.9846 -1.5972 46 1 2.6183 -8.6413 0.3609 47 1 1.6846 -7.6617 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278780507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:49 Heat of formation + Delta-G solvation = 116.789095 kcal Electronic energy + Delta-G solvation = -27161.963583 eV Core-core repulsion = 23539.204970 eV Total energy + Delta-G solvation = -3622.758614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21938 -40.66030 -39.60642 -36.20992 -35.17956 -34.37606 -32.70804 -32.05750 -31.18783 -29.82068 -29.13762 -28.25877 -25.71058 -25.54481 -24.24141 -23.36620 -22.10464 -21.46269 -20.87072 -19.78062 -19.13137 -18.06593 -17.21464 -16.95901 -16.73394 -16.47203 -16.24496 -16.10186 -15.62870 -15.24782 -14.81095 -14.74234 -14.61826 -14.51803 -14.25722 -14.21741 -14.02373 -13.75857 -13.57228 -13.28902 -13.13293 -13.01764 -12.73936 -12.53924 -12.52174 -12.24750 -12.10770 -11.95403 -11.84818 -11.58277 -11.22269 -10.97923 -10.90490 -10.43213 -10.41727 -10.02434 -9.89454 -9.27290 -9.05014 -8.40982 -6.52106 0.04072 0.30792 1.12741 1.32533 1.35828 1.45380 1.76524 1.87096 2.25248 2.90838 2.92260 2.98992 3.26580 3.49891 3.65484 3.77897 3.91744 4.04514 4.09541 4.18564 4.24125 4.25882 4.29309 4.36026 4.41419 4.50103 4.61600 4.69498 4.78496 4.82521 4.83666 4.91483 5.01052 5.03049 5.10554 5.11661 5.13931 5.15341 5.18153 5.24157 5.25167 5.35562 5.53886 5.55914 5.71654 5.86476 5.93833 6.22067 6.35316 6.44663 6.53753 6.88773 7.06661 7.11025 8.76238 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.003718 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.650599 B = 7529.850291 C = 9600.445282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.140 4.140 3 C -0.112 4.112 4 C -0.161 4.161 5 C 0.021 3.979 6 H 0.109 0.891 7 N -0.660 5.660 8 C 0.156 3.844 9 C -0.235 4.235 10 C 0.056 3.944 11 N -0.344 5.344 12 C 0.238 3.762 13 C -0.548 4.548 14 H 0.023 0.977 15 C 0.015 3.985 16 N -0.941 5.941 17 Si 0.956 3.044 18 H -0.251 1.251 19 H -0.281 1.281 20 H -0.240 1.240 21 N -0.316 5.316 22 C 0.088 3.912 23 C 0.021 3.979 24 C -0.151 4.151 25 C 0.091 3.909 26 N -0.503 5.503 27 C 0.090 3.910 28 C -0.166 4.166 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.344 0.656 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.206 0.794 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.273 0.727 44 H 0.183 0.817 45 H 0.184 0.816 46 H 0.178 0.822 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.061 13.839 -8.558 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.169 4.169 4 C -0.200 4.200 5 C -0.089 4.089 6 H 0.126 0.874 7 N -0.292 5.292 8 C 0.026 3.974 9 C -0.247 4.247 10 C -0.091 4.091 11 N -0.124 5.124 12 C 0.118 3.882 13 C -0.586 4.586 14 H 0.042 0.958 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.777 3.223 18 H -0.175 1.175 19 H -0.207 1.207 20 H -0.163 1.163 21 N -0.139 5.139 22 C -0.076 4.076 23 C 0.011 3.989 24 C -0.172 4.172 25 C -0.065 4.065 26 N -0.213 5.213 27 C -0.066 4.066 28 C -0.187 4.187 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.223 0.777 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.200 0.800 45 H 0.201 0.799 46 H 0.195 0.805 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.603 11.810 -9.198 23.108 hybrid contribution -0.903 1.099 2.026 2.475 sum 16.700 12.909 -7.173 22.293 Atomic orbital electron populations 1.21259 0.92536 1.02004 1.01532 1.21919 0.94784 0.91866 1.05505 1.21352 1.00239 0.93380 1.01956 1.23487 1.02321 1.00151 0.93999 1.22582 0.97890 0.94662 0.93801 0.87384 1.60127 1.07117 1.32766 1.29151 1.20024 0.93715 0.93110 0.90510 1.20025 1.09849 0.95690 0.99181 1.22968 0.94742 0.92556 0.98879 1.48791 1.34437 1.09297 1.19918 1.19863 0.87089 0.99259 0.81942 1.21192 0.95739 1.47696 0.93968 0.95829 1.25935 0.93962 0.93278 1.05221 1.70052 1.04431 1.46021 1.37502 0.85613 0.80086 0.79584 0.77055 1.17498 1.20692 1.16341 1.77647 1.18603 1.17339 1.00350 1.20831 0.97490 0.94284 0.95013 1.18401 0.95849 0.93293 0.91321 1.23175 0.98037 1.04438 0.91508 1.23125 0.94469 0.90428 0.98516 1.67661 1.17017 1.07747 1.28859 1.22920 0.95232 1.00902 0.87531 1.22328 1.00664 0.94996 1.00752 0.92826 0.91546 0.92968 0.91708 0.91857 0.92303 0.87663 0.89112 0.83562 0.90433 0.92395 0.77699 0.93885 0.90086 0.91838 0.80022 0.79918 0.80462 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.79 71.98 0.63 -1.27 16 2 C -0.14 -2.01 2.70 -52.16 -0.14 -2.15 16 3 C -0.11 -1.28 9.85 71.98 0.71 -0.57 16 4 C -0.16 -2.35 9.75 30.62 0.30 -2.05 16 5 C 0.02 0.32 5.96 44.92 0.27 0.59 16 6 H 0.11 1.49 7.90 -2.39 -0.02 1.47 16 7 N -0.66 -13.17 4.13 -495.55 -2.05 -15.22 16 8 C 0.16 3.36 4.96 85.56 0.42 3.79 16 9 C -0.24 -7.24 5.60 -19.95 -0.11 -7.35 16 10 C 0.06 1.83 11.33 83.47 0.95 2.77 16 11 N -0.34 -14.73 3.67 -351.93 -1.29 -16.03 16 12 C 0.24 10.78 5.33 85.63 0.46 11.24 16 13 C -0.55 -31.48 9.79 25.60 0.25 -31.23 16 14 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 15 C 0.02 0.85 5.47 84.66 0.46 1.31 16 16 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 17 Si 0.96 40.30 27.47 68.60 1.88 42.18 16 18 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 21 N -0.32 -14.58 12.42 -48.17 -0.60 -15.17 16 22 C 0.09 3.32 6.78 42.51 0.29 3.61 16 23 C 0.02 0.72 5.83 -19.84 -0.12 0.60 16 24 C -0.15 -4.19 8.91 22.58 0.20 -3.99 16 25 C 0.09 2.28 11.17 84.61 0.95 3.22 16 26 N -0.50 -14.04 10.35 -196.14 -2.03 -16.07 16 27 C 0.09 2.48 11.17 84.61 0.95 3.43 16 28 C -0.17 -5.32 9.87 22.58 0.22 -5.10 16 29 H 0.05 0.91 7.59 -2.38 -0.02 0.89 16 30 H 0.07 0.96 7.92 -2.39 -0.02 0.95 16 31 H 0.05 0.98 7.90 -2.39 -0.02 0.96 16 32 H 0.06 0.64 7.90 -2.39 -0.02 0.62 16 33 H 0.06 0.69 7.92 -2.39 -0.02 0.67 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.24 8.05 -2.39 -0.02 1.22 16 36 H 0.09 1.50 8.05 -2.39 -0.02 1.48 16 37 H 0.34 7.40 7.19 -89.69 -0.65 6.76 16 38 H 0.08 1.69 7.82 -2.38 -0.02 1.67 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.21 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.04 1.93 7.20 -2.38 -0.02 1.91 16 42 H 0.08 3.11 7.50 -2.39 -0.02 3.09 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.18 4.65 4.86 -2.91 -0.01 4.64 16 45 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 46 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 47 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -73.08 388.68 3.17 -69.90 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.27 Total: 31.34 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 6.68 Total: -23.15 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -5.67 Total: -120.27 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.18 kcal Total: -73.08 3.17 -69.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278780507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.690 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds