Wall clock time and date at job start Tue Mar 31 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46883 * 270.00348 * 3 2 1 5 5 H 1.48509 * 109.47100 * 29.99471 * 3 2 1 6 6 H 1.48494 * 109.47495 * 149.99905 * 3 2 1 7 7 C 1.37868 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00538 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00166 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47021 * 180.02562 * 9 7 2 11 11 C 1.35057 * 125.92728 * 125.30521 * 10 9 7 12 12 C 1.35068 * 107.98195 * 180.11127 * 11 10 9 13 13 C 1.50703 * 126.07267 * 179.87061 * 12 11 10 14 14 N 1.46901 * 109.47008 * 105.68130 * 13 12 11 15 15 C 1.46897 * 110.99819 * 175.08760 * 14 13 12 16 16 C 1.53003 * 109.47139 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47234 * 180.02562 * 16 15 14 18 18 C 1.52996 * 117.49510 * 243.74687 * 17 16 15 19 19 C 1.52993 * 117.49749 * 175.09081 * 17 16 15 20 20 C 1.40865 * 107.85362 * 359.60879 * 12 11 10 21 21 C 1.48371 * 126.03988 * 180.24448 * 20 12 11 22 22 C 1.39775 * 120.90335 * 317.41303 * 21 20 12 23 23 C 1.37957 * 119.01715 * 179.77851 * 22 21 20 24 24 N 1.31935 * 120.88513 * 0.51744 * 23 22 21 25 25 C 1.31940 * 122.00129 * 359.73421 * 24 23 22 26 26 C 1.37962 * 120.87958 * 0.02562 * 25 24 23 27 27 N 1.31646 * 107.91659 * 0.23852 * 20 12 11 28 28 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46524 * 59.99904 * 9 7 2 30 30 H 1.08999 * 109.46798 * 300.00203 * 9 7 2 31 31 H 1.08000 * 126.00802 * 359.96016 * 11 10 9 32 32 H 1.08995 * 109.47008 * 225.68329 * 13 12 11 33 33 H 1.09000 * 109.46711 * 345.68413 * 13 12 11 34 34 H 1.00903 * 111.00091 * 299.03647 * 14 13 12 35 35 H 1.09002 * 109.47238 * 300.00154 * 15 14 13 36 36 H 1.09005 * 109.47379 * 60.00135 * 15 14 13 37 37 H 1.09002 * 109.47208 * 300.00205 * 16 15 14 38 38 H 1.09005 * 109.46847 * 59.99843 * 16 15 14 39 39 H 1.08997 * 115.54887 * 29.41310 * 17 16 15 40 40 H 1.08999 * 117.50158 * 0.02562 * 18 17 16 41 41 H 1.09010 * 117.50020 * 145.01849 * 18 17 16 42 42 H 1.09007 * 117.49527 * 214.97911 * 19 17 16 43 43 H 1.09000 * 117.50023 * 359.97438 * 19 17 16 44 44 H 1.07999 * 120.48319 * 0.03423 * 22 21 20 45 45 H 1.08004 * 119.55671 * 180.23184 * 23 22 21 46 46 H 1.07998 * 119.55659 * 180.02562 * 25 24 23 47 47 H 1.07998 * 120.48568 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.8596 -3.1118 -0.8926 12 6 5.0594 -4.4041 -0.5543 13 6 5.9452 -5.3844 -1.2791 14 7 7.1692 -5.6084 -0.4983 15 6 8.0050 -6.6465 -1.1160 16 6 9.2679 -6.8508 -0.2767 17 6 10.1388 -7.9317 -0.9204 18 6 10.3728 -9.2170 -0.1242 19 6 11.5072 -8.2031 -0.2923 20 6 4.2973 -4.6710 0.6000 21 6 4.2245 -5.9677 1.3174 22 6 4.1217 -7.1719 0.6151 23 6 4.0612 -8.3554 1.3214 24 7 4.0891 -8.3591 2.6404 25 6 4.1803 -7.2448 3.3410 26 6 4.2504 -6.0179 2.7139 27 7 3.6613 -3.5666 0.9298 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8745 -0.6807 -0.8905 31 1 5.3066 -2.5986 -1.7312 32 1 5.4159 -6.3290 -1.4038 33 1 6.2070 -4.9826 -2.2579 34 1 7.6862 -4.7497 -0.3822 35 1 7.4462 -7.5811 -1.1655 36 1 8.2846 -6.3366 -2.1229 37 1 9.8266 -5.9161 -0.2276 38 1 8.9887 -7.1605 0.7304 39 1 10.0560 -8.0187 -2.0037 40 1 9.9061 -9.2928 0.8578 41 1 10.4445 -10.1498 -0.6839 42 1 12.3247 -8.4691 -0.9624 43 1 11.7872 -7.6114 0.5793 44 1 4.0941 -7.1758 -0.4645 45 1 3.9855 -9.2912 0.7874 46 1 4.2004 -7.2938 4.4197 47 1 4.3254 -5.1098 3.2937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278780615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:55 Heat of formation + Delta-G solvation = 131.611467 kcal Electronic energy + Delta-G solvation = -26534.609527 eV Core-core repulsion = 22912.493660 eV Total energy + Delta-G solvation = -3622.115867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82726 -39.52548 -38.11188 -36.10423 -34.11509 -32.83592 -31.70152 -31.08618 -30.77609 -29.09273 -27.63339 -24.68098 -24.11974 -23.18705 -22.72310 -22.34550 -21.81566 -20.69240 -20.09382 -19.46098 -17.16446 -16.82572 -16.20369 -15.90689 -15.70819 -15.46213 -15.29104 -15.07342 -14.55872 -14.27184 -14.11461 -13.77637 -13.62498 -13.53961 -13.27726 -13.20415 -12.63056 -12.39382 -12.30343 -11.91539 -11.86680 -11.81369 -11.55394 -11.50012 -11.24408 -11.11469 -10.81014 -10.48860 -10.38144 -10.14309 -10.11669 -9.82692 -9.48017 -9.32029 -8.94395 -8.83901 -8.52813 -8.37011 -7.80604 -6.30146 -4.33647 1.29751 1.37803 2.51686 3.07071 3.11085 3.15918 3.15980 3.29412 3.51588 4.09586 4.15977 4.17006 4.61825 4.62626 4.65601 4.66425 4.72846 4.96481 4.99702 5.02329 5.10433 5.14791 5.28006 5.33781 5.36174 5.38121 5.42082 5.48935 5.53065 5.65496 5.65957 5.74629 5.83681 5.87492 5.90954 5.95283 6.04588 6.11972 6.13315 6.32178 6.38255 6.48914 6.68681 6.88298 6.99131 7.08257 7.24114 7.40126 7.62078 8.15046 8.22454 8.34121 8.78728 9.23791 10.82395 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002925 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.169165 B = 9570.810484 C =11234.915738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.230 3.770 10 N -0.318 5.318 11 C 0.054 3.946 12 C -0.238 4.238 13 C 0.144 3.856 14 N -0.684 5.684 15 C 0.064 3.936 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.180 4.180 19 C -0.183 4.183 20 C 0.087 3.913 21 C 0.070 3.930 22 C -0.149 4.149 23 C 0.094 3.906 24 N -0.493 5.493 25 C 0.095 3.905 26 C -0.150 4.150 27 N -0.251 5.251 28 H 0.269 0.731 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.166 0.834 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.339 0.661 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.998 -14.324 -2.352 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.111 3.889 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.251 4.251 13 C 0.014 3.986 14 N -0.315 5.315 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.169 4.169 18 C -0.217 4.217 19 C -0.221 4.221 20 C -0.076 4.076 21 C 0.060 3.940 22 C -0.170 4.170 23 C -0.062 4.062 24 N -0.203 5.203 25 C -0.061 4.061 26 C -0.171 4.171 27 N -0.075 5.075 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.183 0.817 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.169 0.831 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.584 -14.660 -0.660 22.903 hybrid contribution 1.249 2.104 -1.945 3.126 sum 18.833 -12.556 -2.605 22.784 Atomic orbital electron populations 1.69867 1.06154 1.27402 1.48708 1.24825 0.94872 0.98788 0.94169 0.86915 0.80436 0.83882 0.78908 1.19709 1.20411 1.18895 1.21062 0.87566 0.95789 1.53130 0.89608 1.20097 0.97659 0.72869 0.98289 1.48955 1.31266 1.10906 1.18631 1.22249 0.96175 0.94241 0.96905 1.19598 1.09076 0.94876 1.01537 1.20069 0.89081 0.96992 0.92412 1.60449 1.07176 1.12224 1.51626 1.21902 0.93501 0.96142 0.95033 1.21136 0.94438 0.97332 0.99534 1.22285 0.98089 0.97738 0.98811 1.23048 1.03012 0.93661 1.01965 1.22966 0.91993 1.03736 1.03356 1.20277 0.98799 0.92626 0.95920 1.18032 0.93766 0.90002 0.92220 1.22057 1.01417 0.92327 1.01206 1.22516 0.96288 0.97438 0.89978 1.67581 1.12697 1.31450 1.08571 1.22568 0.95972 0.87513 1.00072 1.22208 1.00826 0.99735 0.94317 1.77745 1.20695 0.95576 1.13497 0.92068 0.93827 0.93434 0.81656 0.90669 0.95050 0.84312 0.91039 0.95672 0.91884 0.90931 0.87991 0.88656 0.89038 0.89041 0.88848 0.84993 0.83105 0.83000 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 7 C -0.54 -14.81 9.79 -34.44 -0.34 -15.15 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.23 5.21 5.33 -5.19 -0.03 5.19 16 10 N -0.32 -6.74 3.67 -62.58 -0.23 -6.97 16 11 C 0.05 0.91 11.32 -17.26 -0.20 0.72 16 12 C -0.24 -3.79 5.65 -104.75 -0.59 -4.39 16 13 C 0.14 1.75 5.66 -4.97 -0.03 1.72 16 14 N -0.68 -7.64 6.46 -115.06 -0.74 -8.38 16 15 C 0.06 0.58 5.64 -3.82 -0.02 0.56 16 16 C -0.09 -0.74 5.75 -26.73 -0.15 -0.89 16 17 C -0.15 -1.15 5.73 -90.62 -0.52 -1.67 16 18 C -0.18 -1.34 10.18 -26.70 -0.27 -1.61 16 19 C -0.18 -1.31 10.25 -26.70 -0.27 -1.59 16 20 C 0.09 1.61 6.72 -82.78 -0.56 1.05 16 21 C 0.07 1.13 5.77 -104.58 -0.60 0.53 16 22 C -0.15 -2.05 9.02 -39.11 -0.35 -2.41 16 23 C 0.09 1.21 11.17 -17.61 -0.20 1.02 16 24 N -0.49 -7.03 10.35 -13.34 -0.14 -7.17 16 25 C 0.10 1.30 11.17 -17.61 -0.20 1.10 16 26 C -0.15 -2.28 9.89 -39.11 -0.39 -2.67 16 27 N -0.25 -5.53 12.44 33.42 0.42 -5.12 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 30 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 31 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 32 H 0.08 0.88 5.82 -51.93 -0.30 0.58 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.34 3.71 8.78 -39.29 -0.34 3.36 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 39 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 41 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.13 1.62 6.27 -52.49 -0.33 1.29 16 45 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -31.56 394.74 -10.68 -42.24 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.22 Total: 6.28 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -4.81 Total: -16.45 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.08 Total: -53.03 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.56 -10.68 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278780615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.850 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds