Wall clock time and date at job start Tue Mar 31 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46883 * 270.00348 * 3 2 1 5 5 H 1.48509 * 109.47100 * 29.99471 * 3 2 1 6 6 H 1.48494 * 109.47495 * 149.99905 * 3 2 1 7 7 C 1.37868 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00538 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00166 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47021 * 180.02562 * 9 7 2 11 11 C 1.35057 * 125.92728 * 125.30521 * 10 9 7 12 12 C 1.35068 * 107.98195 * 180.11127 * 11 10 9 13 13 C 1.50703 * 126.07267 * 179.87061 * 12 11 10 14 14 N 1.46901 * 109.47008 * 105.68130 * 13 12 11 15 15 C 1.46897 * 110.99819 * 175.08760 * 14 13 12 16 16 C 1.53003 * 109.47139 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47234 * 180.02562 * 16 15 14 18 18 C 1.52996 * 117.49510 * 243.74687 * 17 16 15 19 19 C 1.52993 * 117.49749 * 175.09081 * 17 16 15 20 20 C 1.40865 * 107.85362 * 359.60879 * 12 11 10 21 21 C 1.48371 * 126.03988 * 180.24448 * 20 12 11 22 22 C 1.39775 * 120.90335 * 317.41303 * 21 20 12 23 23 C 1.37957 * 119.01715 * 179.77851 * 22 21 20 24 24 N 1.31935 * 120.88513 * 0.51744 * 23 22 21 25 25 C 1.31940 * 122.00129 * 359.73421 * 24 23 22 26 26 C 1.37962 * 120.87958 * 0.02562 * 25 24 23 27 27 N 1.31646 * 107.91659 * 0.23852 * 20 12 11 28 28 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46524 * 59.99904 * 9 7 2 30 30 H 1.08999 * 109.46798 * 300.00203 * 9 7 2 31 31 H 1.08000 * 126.00802 * 359.96016 * 11 10 9 32 32 H 1.08995 * 109.47008 * 225.68329 * 13 12 11 33 33 H 1.09000 * 109.46711 * 345.68413 * 13 12 11 34 34 H 1.00903 * 111.00091 * 299.03647 * 14 13 12 35 35 H 1.09002 * 109.47238 * 300.00154 * 15 14 13 36 36 H 1.09005 * 109.47379 * 60.00135 * 15 14 13 37 37 H 1.09002 * 109.47208 * 300.00205 * 16 15 14 38 38 H 1.09005 * 109.46847 * 59.99843 * 16 15 14 39 39 H 1.08997 * 115.54887 * 29.41310 * 17 16 15 40 40 H 1.08999 * 117.50158 * 0.02562 * 18 17 16 41 41 H 1.09010 * 117.50020 * 145.01849 * 18 17 16 42 42 H 1.09007 * 117.49527 * 214.97911 * 19 17 16 43 43 H 1.09000 * 117.50023 * 359.97438 * 19 17 16 44 44 H 1.07999 * 120.48319 * 0.03423 * 22 21 20 45 45 H 1.08004 * 119.55671 * 180.23184 * 23 22 21 46 46 H 1.07998 * 119.55659 * 180.02562 * 25 24 23 47 47 H 1.07998 * 120.48568 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.8596 -3.1118 -0.8926 12 6 5.0594 -4.4041 -0.5543 13 6 5.9452 -5.3844 -1.2791 14 7 7.1692 -5.6084 -0.4983 15 6 8.0050 -6.6465 -1.1160 16 6 9.2679 -6.8508 -0.2767 17 6 10.1388 -7.9317 -0.9204 18 6 10.3728 -9.2170 -0.1242 19 6 11.5072 -8.2031 -0.2923 20 6 4.2973 -4.6710 0.6000 21 6 4.2245 -5.9677 1.3174 22 6 4.1217 -7.1719 0.6151 23 6 4.0612 -8.3554 1.3214 24 7 4.0891 -8.3591 2.6404 25 6 4.1803 -7.2448 3.3410 26 6 4.2504 -6.0179 2.7139 27 7 3.6613 -3.5666 0.9298 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8745 -0.6807 -0.8905 31 1 5.3066 -2.5986 -1.7312 32 1 5.4159 -6.3290 -1.4038 33 1 6.2070 -4.9826 -2.2579 34 1 7.6862 -4.7497 -0.3822 35 1 7.4462 -7.5811 -1.1655 36 1 8.2846 -6.3366 -2.1229 37 1 9.8266 -5.9161 -0.2276 38 1 8.9887 -7.1605 0.7304 39 1 10.0560 -8.0187 -2.0037 40 1 9.9061 -9.2928 0.8578 41 1 10.4445 -10.1498 -0.6839 42 1 12.3247 -8.4691 -0.9624 43 1 11.7872 -7.6114 0.5793 44 1 4.0941 -7.1758 -0.4645 45 1 3.9855 -9.2912 0.7874 46 1 4.2004 -7.2938 4.4197 47 1 4.3254 -5.1098 3.2937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278780615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:54 Heat of formation + Delta-G solvation = 111.818888 kcal Electronic energy + Delta-G solvation = -26535.467798 eV Core-core repulsion = 22912.493660 eV Total energy + Delta-G solvation = -3622.974138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19162 -40.66897 -38.74631 -36.99449 -35.72533 -34.49466 -32.91044 -32.39907 -31.92993 -30.30439 -29.12872 -25.78274 -25.61989 -24.27464 -23.50227 -23.25744 -22.96955 -21.53170 -21.28765 -20.75032 -19.13233 -18.10966 -17.28486 -16.99901 -16.84967 -16.59293 -16.26245 -16.07035 -15.90954 -15.45026 -15.19183 -14.91665 -14.73009 -14.64153 -14.48854 -14.35302 -14.26610 -13.82147 -13.62318 -13.17079 -12.79183 -12.64904 -12.53296 -12.45014 -12.38429 -12.22423 -12.06774 -12.03864 -11.84232 -11.51569 -11.06511 -10.91813 -10.89131 -10.71702 -10.43517 -10.02844 -9.94503 -9.27532 -9.13439 -8.40995 -6.51965 0.09522 0.28848 1.14530 1.32688 1.35876 1.45512 1.75807 1.87619 2.25363 2.91043 2.94040 2.99122 3.33610 3.50016 3.64300 3.82363 3.97145 4.06577 4.07229 4.08158 4.18349 4.20360 4.25429 4.32632 4.35985 4.44489 4.52803 4.62752 4.67330 4.70832 4.82610 4.83736 4.86212 4.91546 4.97575 5.03702 5.08748 5.10143 5.17258 5.22113 5.24855 5.30558 5.46538 5.48726 5.72810 5.80089 5.94104 6.21272 6.36525 6.53707 6.56502 6.90045 7.06253 7.11187 8.76203 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002925 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.169165 B = 9570.810484 C =11234.915738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.547 4.547 8 H 0.024 0.976 9 C 0.239 3.761 10 N -0.346 5.346 11 C 0.053 3.947 12 C -0.231 4.231 13 C 0.151 3.849 14 N -0.694 5.694 15 C 0.070 3.930 16 C -0.080 4.080 17 C -0.153 4.153 18 C -0.184 4.184 19 C -0.183 4.183 20 C 0.089 3.911 21 C 0.044 3.956 22 C -0.147 4.147 23 C 0.100 3.900 24 N -0.504 5.504 25 C 0.098 3.902 26 C -0.166 4.166 27 N -0.317 5.317 28 H 0.273 0.727 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.205 0.795 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.341 0.659 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.187 0.813 46 H 0.178 0.822 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.957 -14.832 -3.813 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.585 4.585 8 H 0.042 0.958 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.094 4.094 12 C -0.243 4.243 13 C 0.021 3.979 14 N -0.325 5.325 15 C -0.059 4.059 16 C -0.118 4.118 17 C -0.172 4.172 18 C -0.221 4.221 19 C -0.220 4.220 20 C -0.075 4.075 21 C 0.034 3.966 22 C -0.168 4.168 23 C -0.057 4.057 24 N -0.214 5.214 25 C -0.058 4.058 26 C -0.187 4.187 27 N -0.141 5.141 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.222 0.778 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.166 0.834 45 H 0.204 0.796 46 H 0.195 0.805 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.576 -15.206 -2.127 25.673 hybrid contribution 0.302 2.043 -1.462 2.530 sum 20.877 -13.163 -3.589 24.940 Atomic orbital electron populations 1.70053 1.08616 1.28854 1.50499 1.25941 0.95775 1.03606 0.93186 0.85609 0.79429 0.77151 0.80131 1.17521 1.20678 1.16338 1.21198 0.90497 0.93642 1.53204 0.95776 1.19854 0.94124 0.74670 0.99479 1.48779 1.33236 1.10473 1.20147 1.22974 0.94871 0.94728 0.96836 1.20046 1.08521 0.95253 1.00508 1.20059 0.88903 0.96221 0.92692 1.60381 1.07288 1.12773 1.52069 1.21877 0.93212 0.95340 0.95497 1.21044 0.94427 0.97688 0.98642 1.22283 0.98259 0.97473 0.99177 1.23090 1.03199 0.94079 1.01757 1.23035 0.92111 1.03387 1.03418 1.20791 0.97764 0.92458 0.96487 1.18242 0.95497 0.90023 0.92810 1.22234 1.00832 0.91681 1.02007 1.23084 0.94474 0.98438 0.89681 1.67685 1.12965 1.31423 1.09343 1.22927 0.94853 0.86715 1.01331 1.22256 1.01934 1.00212 0.94272 1.77657 1.23401 0.97271 1.15734 0.91842 0.93920 0.90135 0.77786 0.90126 0.93022 0.84168 0.91186 0.94441 0.91809 0.92560 0.87160 0.89374 0.88136 0.87967 0.89060 0.83446 0.79594 0.80461 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.96 21.44 0.30 -57.81 16 2 C 0.01 0.78 5.47 84.65 0.46 1.25 16 3 Si 0.96 40.40 27.47 68.60 1.88 42.28 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 7 C -0.55 -31.47 9.79 25.60 0.25 -31.22 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 9 C 0.24 10.83 5.33 85.64 0.46 11.29 16 10 N -0.35 -14.86 3.67 -351.90 -1.29 -16.15 16 11 C 0.05 1.75 11.32 83.47 0.94 2.69 16 12 C -0.23 -7.13 5.65 -19.95 -0.11 -7.24 16 13 C 0.15 3.29 5.66 85.56 0.48 3.78 16 14 N -0.69 -14.07 6.46 -517.92 -3.35 -17.41 16 15 C 0.07 1.10 5.64 86.30 0.49 1.59 16 16 C -0.08 -1.23 5.75 30.60 0.18 -1.06 16 17 C -0.15 -2.04 5.73 -10.80 -0.06 -2.10 16 18 C -0.18 -2.44 10.18 30.61 0.31 -2.13 16 19 C -0.18 -2.28 10.25 30.61 0.31 -1.96 16 20 C 0.09 3.34 6.72 42.52 0.29 3.62 16 21 C 0.04 1.45 5.77 -19.84 -0.11 1.33 16 22 C -0.15 -3.86 9.02 22.57 0.20 -3.66 16 23 C 0.10 2.35 11.17 84.61 0.95 3.30 16 24 N -0.50 -13.59 10.35 -196.13 -2.03 -15.62 16 25 C 0.10 2.61 11.17 84.61 0.95 3.55 16 26 C -0.17 -5.17 9.89 22.57 0.22 -4.94 16 27 N -0.32 -14.61 12.44 -48.17 -0.60 -15.21 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.04 1.92 7.20 -2.39 -0.02 1.91 16 30 H 0.08 3.11 7.50 -2.39 -0.02 3.09 16 31 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.08 1.69 5.82 -2.39 -0.01 1.67 16 33 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 34 H 0.34 6.77 8.78 -89.69 -0.79 5.98 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.05 7.88 -2.38 -0.02 1.03 16 39 H 0.11 1.30 8.08 -2.39 -0.02 1.28 16 40 H 0.09 1.28 8.03 -2.39 -0.02 1.26 16 41 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.15 3.33 6.27 -2.91 -0.02 3.31 16 45 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 46 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -73.90 394.74 1.25 -72.65 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.13 Total: 29.18 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 6.20 Total: -21.91 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -6.97 Total: -122.21 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.28 kcal Total: -73.90 1.25 -72.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278780615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.473 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds