Wall clock time and date at job start Tue Mar 31 2020 15:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.64314 * 2 1 4 4 C 1.54600 * 110.72013 * 236.85372 * 2 1 3 5 5 C 1.53996 * 105.13617 * 219.68453 * 4 2 1 6 6 N 1.47894 * 107.06242 * 358.77519 * 5 4 2 7 7 C 1.46900 * 111.00522 * 145.84266 * 6 5 4 8 8 C 1.50700 * 109.47020 * 290.67170 * 7 6 5 9 9 C 1.35067 * 126.07843 * 95.11691 * 8 7 6 10 10 N 1.35051 * 107.99071 * 179.87285 * 9 8 7 11 11 C 1.46499 * 125.93127 * 180.18747 * 10 9 8 12 12 C 1.50699 * 109.47104 * 125.26710 * 11 10 9 13 13 H 1.07998 * 120.00334 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00020 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00390 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99956 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46974 * 90.00013 * 16 14 12 18 18 H 1.48501 * 109.47347 * 209.99842 * 16 14 12 19 19 H 1.48499 * 109.47377 * 330.00355 * 16 14 12 20 20 N 1.40072 * 108.13925 * 0.39254 * 10 9 8 21 21 C 1.31653 * 108.10421 * 359.75576 * 20 10 9 22 22 C 1.48364 * 126.04390 * 179.97438 * 21 20 10 23 23 C 1.39769 * 120.90585 * 136.83649 * 22 21 20 24 24 C 1.37962 * 119.02282 * 179.77790 * 23 22 21 25 25 N 1.31934 * 120.87876 * 0.51420 * 24 23 22 26 26 C 1.31934 * 122.00471 * 359.73910 * 25 24 23 27 27 C 1.37964 * 120.87948 * 359.97438 * 26 25 24 28 28 C 1.48542 * 105.81738 * 25.33038 * 6 5 4 29 29 H 1.09003 * 109.47460 * 181.69253 * 1 2 3 30 30 H 1.08999 * 109.47402 * 61.69296 * 1 2 3 31 31 H 1.08999 * 109.47125 * 301.69411 * 1 2 3 32 32 H 1.09000 * 110.31308 * 338.59858 * 4 2 1 33 33 H 1.09003 * 110.30886 * 100.77230 * 4 2 1 34 34 H 1.09007 * 109.91495 * 118.13365 * 5 4 2 35 35 H 1.08999 * 109.91779 * 239.42096 * 5 4 2 36 36 H 1.09001 * 109.46918 * 50.66754 * 7 6 5 37 37 H 1.08998 * 109.47425 * 170.66961 * 7 6 5 38 38 H 1.08007 * 126.00469 * 0.02562 * 9 8 7 39 39 H 1.09004 * 109.47032 * 245.26666 * 11 10 9 40 40 H 1.08999 * 109.47191 * 5.26554 * 11 10 9 41 41 H 0.97000 * 120.00151 * 179.97438 * 15 14 12 42 42 H 1.08002 * 120.48849 * 0.02597 * 23 22 21 43 43 H 1.07997 * 119.56064 * 180.27410 * 24 23 22 44 44 H 1.07999 * 119.56388 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.48660 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.66562 * 202.36027 * 28 6 5 47 47 H 1.08997 * 110.66634 * 79.23282 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0770 -0.7906 -1.2107 5 6 3.2892 -1.5698 -0.6677 6 7 3.4318 -1.2107 0.7599 7 6 3.9212 -2.3526 1.5438 8 6 2.8479 -3.4079 1.6178 9 6 2.7271 -4.4782 0.8029 10 7 1.6432 -5.1815 1.1958 11 6 1.1532 -6.4190 0.5837 12 6 1.0347 -7.4885 1.6387 13 1 1.2984 -7.2687 2.6626 14 6 0.5905 -8.7481 1.2965 15 7 0.4876 -9.6818 2.2170 16 14 0.1349 -9.1287 -0.4747 17 1 1.3329 -9.6255 -1.1982 18 1 -0.9254 -10.1681 -0.5008 19 1 -0.3647 -7.8951 -1.1334 20 7 1.0662 -4.5198 2.2872 21 6 1.7886 -3.4500 2.5456 22 6 1.5322 -2.4628 3.6231 23 6 2.5781 -1.9683 4.4075 24 6 2.2962 -1.0480 5.3958 25 7 1.0591 -0.6429 5.6110 26 6 0.0432 -1.0885 4.8968 27 6 0.2375 -2.0060 3.8849 28 6 2.0782 -0.7967 1.2104 29 1 -0.3634 -1.0272 0.0304 30 1 -0.3634 0.4873 -0.9048 31 1 -0.3633 0.5399 0.8744 32 1 1.3207 -1.4806 -1.5850 33 1 2.3895 -0.1063 -1.9995 34 1 3.1160 -2.6415 -0.7656 35 1 4.1886 -1.2850 -1.2138 36 1 4.8075 -2.7689 1.0649 37 1 4.1742 -2.0205 2.5506 38 1 3.3837 -4.7290 -0.0173 39 1 0.1755 -6.2404 0.1359 40 1 1.8518 -6.7446 -0.1870 41 1 0.1747 -10.5678 1.9763 42 1 3.5925 -2.2988 4.2397 43 1 3.0983 -0.6569 6.0041 44 1 -0.9536 -0.7297 5.1065 45 1 -0.5987 -2.3663 3.3040 46 1 2.1445 -0.1595 2.0923 47 1 1.4560 -1.6690 1.4107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279452381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:45 Heat of formation + Delta-G solvation = 119.278728 kcal Electronic energy + Delta-G solvation = -28414.605169 eV Core-core repulsion = 24791.954514 eV Total energy + Delta-G solvation = -3622.650655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25603 -39.67728 -38.77523 -34.56877 -33.54927 -32.96183 -31.21037 -31.19235 -30.20317 -29.29305 -27.78906 -26.39297 -24.40475 -24.23497 -23.24979 -22.06733 -20.97560 -20.48790 -19.77656 -19.42054 -17.20837 -16.81018 -16.27122 -15.95932 -15.73969 -15.72700 -15.30915 -14.49447 -14.36295 -14.12279 -13.86910 -13.72687 -13.48159 -13.34920 -13.21809 -13.12050 -12.64055 -12.50163 -12.41006 -12.20453 -12.11575 -11.65566 -11.49167 -11.20403 -11.05716 -10.90546 -10.87701 -10.69316 -10.57627 -10.36107 -10.17976 -9.85912 -9.55560 -9.42740 -9.08755 -8.87747 -8.64450 -8.33531 -7.88173 -6.33999 -4.37930 1.13237 1.23006 2.42545 3.00381 3.05213 3.09822 3.12411 3.22512 3.95267 4.12430 4.22035 4.50755 4.56843 4.60842 4.71284 4.87553 4.92390 4.94760 5.05180 5.16033 5.24133 5.27305 5.36320 5.42999 5.48919 5.54277 5.61403 5.67008 5.72010 5.78062 5.85785 5.87044 5.89967 5.96686 6.00782 6.04822 6.09582 6.17325 6.22011 6.25863 6.36923 6.39926 6.56663 6.74146 6.92488 6.99145 7.12356 7.17397 7.53589 8.02432 8.15559 8.25434 8.74267 9.19688 10.78469 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.004336 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.417653 B = 6456.085700 C = 7773.266095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.125 4.125 5 C 0.032 3.968 6 N -0.508 5.508 7 C 0.121 3.879 8 C -0.273 4.273 9 C 0.059 3.941 10 N -0.316 5.316 11 C 0.230 3.770 12 C -0.539 4.539 13 H 0.086 0.914 14 C 0.079 3.921 15 N -0.883 5.883 16 Si 0.872 3.128 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.265 1.265 20 N -0.246 5.246 21 C 0.077 3.923 22 C 0.059 3.941 23 C -0.156 4.156 24 C 0.098 3.902 25 N -0.490 5.490 26 C 0.098 3.902 27 C -0.152 4.152 28 C 0.033 3.967 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.270 0.730 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.135 0.865 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 18.732 -4.037 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.096 4.096 6 N -0.230 5.230 7 C -0.008 4.008 8 C -0.286 4.286 9 C -0.090 4.090 10 N -0.096 5.096 11 C 0.111 3.889 12 C -0.577 4.577 13 H 0.104 0.896 14 C -0.125 4.125 15 N -0.520 5.520 16 Si 0.698 3.302 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.190 1.190 20 N -0.070 5.070 21 C -0.087 4.087 22 C 0.049 3.951 23 C -0.177 4.177 24 C -0.058 4.058 25 N -0.200 5.200 26 C -0.058 4.058 27 C -0.173 4.173 28 C -0.095 4.095 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.184 0.816 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.153 0.847 46 H 0.089 0.911 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.392 18.660 -3.038 19.207 hybrid contribution 0.032 -1.584 -2.014 2.562 sum 3.424 17.076 -5.052 18.133 Atomic orbital electron populations 1.21759 0.94855 1.01924 1.01461 1.22044 0.95244 0.99342 0.94886 0.90528 1.22445 0.97350 0.98773 0.97780 1.22851 0.97982 0.98915 0.89900 1.65141 1.23735 1.31917 1.02177 1.20685 0.94220 0.86914 0.98989 1.20417 1.03655 1.02205 1.02372 1.22288 0.92844 0.93206 1.00701 1.49013 1.19239 1.19671 1.21660 1.20109 0.95690 0.78825 0.94287 1.21039 1.46831 0.93661 0.96130 0.89620 1.24816 0.94505 0.95727 0.97493 1.69863 1.45214 1.03683 1.33250 0.86924 0.79211 0.79108 0.84953 1.19637 1.20349 1.18966 1.77747 1.20726 1.05900 1.02657 1.20316 0.96203 0.95130 0.97059 1.18113 0.93247 0.92117 0.91612 1.22182 1.00034 0.98891 0.96607 1.22597 0.93998 0.93959 0.95290 1.67613 1.00011 1.25498 1.26859 1.22611 0.98060 0.93715 0.91460 1.22236 0.97097 0.98401 0.99566 1.23529 0.89831 0.99042 0.97057 0.92677 0.92746 0.92593 0.91751 0.91542 0.93169 0.90876 0.90534 0.89996 0.81636 0.93895 0.93422 0.92018 0.84495 0.82751 0.82823 0.84695 0.91097 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.15 37.16 0.34 -1.15 16 2 C -0.10 -1.07 3.66 -88.76 -0.32 -1.39 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.36 6.51 -25.37 -0.17 -1.52 16 5 C 0.03 0.36 6.46 -2.76 -0.02 0.35 16 6 N -0.51 -6.28 5.54 -231.89 -1.28 -7.56 16 7 C 0.12 1.53 5.68 -4.98 -0.03 1.50 16 8 C -0.27 -4.25 4.02 -104.75 -0.42 -4.67 16 9 C 0.06 0.99 9.96 -17.26 -0.17 0.82 16 10 N -0.32 -6.57 3.67 -62.58 -0.23 -6.80 16 11 C 0.23 5.16 5.33 -5.20 -0.03 5.13 16 12 C -0.54 -14.72 9.79 -34.44 -0.34 -15.06 16 13 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 14 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 15 N -0.88 -25.98 13.96 55.43 0.77 -25.21 16 16 Si 0.87 19.56 27.47 -169.99 -4.67 14.89 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 20 N -0.25 -5.26 12.44 33.42 0.42 -4.84 16 21 C 0.08 1.34 5.23 -82.78 -0.43 0.91 16 22 C 0.06 0.89 3.79 -104.58 -0.40 0.49 16 23 C -0.16 -2.02 8.84 -39.11 -0.35 -2.37 16 24 C 0.10 1.18 11.17 -17.61 -0.20 0.98 16 25 N -0.49 -6.51 10.35 -13.35 -0.14 -6.65 16 26 C 0.10 1.23 11.17 -17.61 -0.20 1.03 16 27 C -0.15 -2.13 9.80 -39.11 -0.38 -2.51 16 28 C 0.03 0.42 4.61 -1.90 -0.01 0.41 16 29 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.62 5.77 -51.92 -0.30 0.32 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.08 0.98 5.44 -51.93 -0.28 0.70 16 38 H 0.17 2.26 7.90 -52.48 -0.41 1.84 16 39 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 40 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.14 1.59 6.40 -52.49 -0.34 1.25 16 43 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 47 H 0.07 1.01 4.01 -51.93 -0.21 0.80 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -30.91 372.43 -9.68 -40.59 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.95 Total: 4.94 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -3.21 Total: -14.97 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.46 Total: -51.06 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.91 -9.68 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279452381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.867 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds