Wall clock time and date at job start Tue Mar 31 2020 15:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.64314 * 2 1 4 4 C 1.54600 * 110.72013 * 236.85372 * 2 1 3 5 5 C 1.53996 * 105.13617 * 219.68453 * 4 2 1 6 6 N 1.47894 * 107.06242 * 358.77519 * 5 4 2 7 7 C 1.46900 * 111.00522 * 145.84266 * 6 5 4 8 8 C 1.50700 * 109.47020 * 290.67170 * 7 6 5 9 9 C 1.35067 * 126.07843 * 95.11691 * 8 7 6 10 10 N 1.35051 * 107.99071 * 179.87285 * 9 8 7 11 11 C 1.46499 * 125.93127 * 180.18747 * 10 9 8 12 12 C 1.50699 * 109.47104 * 125.26710 * 11 10 9 13 13 H 1.07998 * 120.00334 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00020 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00390 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99956 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46974 * 90.00013 * 16 14 12 18 18 H 1.48501 * 109.47347 * 209.99842 * 16 14 12 19 19 H 1.48499 * 109.47377 * 330.00355 * 16 14 12 20 20 N 1.40072 * 108.13925 * 0.39254 * 10 9 8 21 21 C 1.31653 * 108.10421 * 359.75576 * 20 10 9 22 22 C 1.48364 * 126.04390 * 179.97438 * 21 20 10 23 23 C 1.39769 * 120.90585 * 136.83649 * 22 21 20 24 24 C 1.37962 * 119.02282 * 179.77790 * 23 22 21 25 25 N 1.31934 * 120.87876 * 0.51420 * 24 23 22 26 26 C 1.31934 * 122.00471 * 359.73910 * 25 24 23 27 27 C 1.37964 * 120.87948 * 359.97438 * 26 25 24 28 28 C 1.48542 * 105.81738 * 25.33038 * 6 5 4 29 29 H 1.09003 * 109.47460 * 181.69253 * 1 2 3 30 30 H 1.08999 * 109.47402 * 61.69296 * 1 2 3 31 31 H 1.08999 * 109.47125 * 301.69411 * 1 2 3 32 32 H 1.09000 * 110.31308 * 338.59858 * 4 2 1 33 33 H 1.09003 * 110.30886 * 100.77230 * 4 2 1 34 34 H 1.09007 * 109.91495 * 118.13365 * 5 4 2 35 35 H 1.08999 * 109.91779 * 239.42096 * 5 4 2 36 36 H 1.09001 * 109.46918 * 50.66754 * 7 6 5 37 37 H 1.08998 * 109.47425 * 170.66961 * 7 6 5 38 38 H 1.08007 * 126.00469 * 0.02562 * 9 8 7 39 39 H 1.09004 * 109.47032 * 245.26666 * 11 10 9 40 40 H 1.08999 * 109.47191 * 5.26554 * 11 10 9 41 41 H 0.97000 * 120.00151 * 179.97438 * 15 14 12 42 42 H 1.08002 * 120.48849 * 0.02597 * 23 22 21 43 43 H 1.07997 * 119.56064 * 180.27410 * 24 23 22 44 44 H 1.07999 * 119.56388 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.48660 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.66562 * 202.36027 * 28 6 5 47 47 H 1.08997 * 110.66634 * 79.23282 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0770 -0.7906 -1.2107 5 6 3.2892 -1.5698 -0.6677 6 7 3.4318 -1.2107 0.7599 7 6 3.9212 -2.3526 1.5438 8 6 2.8479 -3.4079 1.6178 9 6 2.7271 -4.4782 0.8029 10 7 1.6432 -5.1815 1.1958 11 6 1.1532 -6.4190 0.5837 12 6 1.0347 -7.4885 1.6387 13 1 1.2984 -7.2687 2.6626 14 6 0.5905 -8.7481 1.2965 15 7 0.4876 -9.6818 2.2170 16 14 0.1349 -9.1287 -0.4747 17 1 1.3329 -9.6255 -1.1982 18 1 -0.9254 -10.1681 -0.5008 19 1 -0.3647 -7.8951 -1.1334 20 7 1.0662 -4.5198 2.2872 21 6 1.7886 -3.4500 2.5456 22 6 1.5322 -2.4628 3.6231 23 6 2.5781 -1.9683 4.4075 24 6 2.2962 -1.0480 5.3958 25 7 1.0591 -0.6429 5.6110 26 6 0.0432 -1.0885 4.8968 27 6 0.2375 -2.0060 3.8849 28 6 2.0782 -0.7967 1.2104 29 1 -0.3634 -1.0272 0.0304 30 1 -0.3634 0.4873 -0.9048 31 1 -0.3633 0.5399 0.8744 32 1 1.3207 -1.4806 -1.5850 33 1 2.3895 -0.1063 -1.9995 34 1 3.1160 -2.6415 -0.7656 35 1 4.1886 -1.2850 -1.2138 36 1 4.8075 -2.7689 1.0649 37 1 4.1742 -2.0205 2.5506 38 1 3.3837 -4.7290 -0.0173 39 1 0.1755 -6.2404 0.1359 40 1 1.8518 -6.7446 -0.1870 41 1 0.1747 -10.5678 1.9763 42 1 3.5925 -2.2988 4.2397 43 1 3.0983 -0.6569 6.0041 44 1 -0.9536 -0.7297 5.1065 45 1 -0.5987 -2.3663 3.3040 46 1 2.1445 -0.1595 2.0923 47 1 1.4560 -1.6690 1.4107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279452381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:44 Heat of formation + Delta-G solvation = 98.850498 kcal Electronic energy + Delta-G solvation = -28415.491004 eV Core-core repulsion = 24791.954514 eV Total energy + Delta-G solvation = -3623.536490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54592 -40.75981 -39.77820 -36.03230 -34.84522 -34.44696 -32.74358 -32.21866 -31.32928 -30.42780 -29.30565 -27.45780 -25.73719 -25.40031 -24.29344 -23.53253 -22.08800 -21.63538 -20.84121 -20.66254 -19.16992 -18.09418 -17.37381 -17.16912 -16.85824 -16.74932 -16.52441 -16.07707 -15.58170 -15.31676 -15.00601 -14.92275 -14.75408 -14.48066 -14.40310 -14.18712 -14.03044 -13.74753 -13.63958 -13.55290 -13.10887 -12.91600 -12.66690 -12.60010 -12.43385 -12.14382 -12.07722 -11.87347 -11.77935 -11.59414 -11.52885 -11.33031 -10.93881 -10.86988 -10.47645 -10.09840 -10.02544 -9.40900 -9.20957 -8.43854 -6.55095 0.00288 0.21572 1.05920 1.30119 1.32943 1.42335 1.70050 1.78533 2.22401 2.87600 2.91147 3.24664 3.36940 3.59436 3.67164 3.74858 3.83199 3.99217 4.03991 4.10859 4.13617 4.21263 4.30631 4.36117 4.45828 4.57853 4.61596 4.63211 4.64282 4.75328 4.81320 4.82899 4.87426 4.92510 4.95237 5.00074 5.01700 5.08164 5.14426 5.16837 5.24387 5.27077 5.38065 5.46065 5.65220 5.73288 5.89176 6.01479 6.13827 6.30055 6.50147 6.82035 7.01016 7.08160 8.73271 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.004336 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.417653 B = 6456.085700 C = 7773.266095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.029 3.971 6 N -0.504 5.504 7 C 0.124 3.876 8 C -0.263 4.263 9 C 0.057 3.943 10 N -0.344 5.344 11 C 0.239 3.761 12 C -0.548 4.548 13 H 0.025 0.975 14 C 0.017 3.983 15 N -0.940 5.940 16 Si 0.954 3.046 17 H -0.251 1.251 18 H -0.280 1.280 19 H -0.242 1.242 20 N -0.311 5.311 21 C 0.087 3.913 22 C 0.038 3.962 23 C -0.156 4.156 24 C 0.104 3.896 25 N -0.501 5.501 26 C 0.102 3.898 27 C -0.163 4.163 28 C 0.037 3.963 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.199 0.801 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.273 0.727 42 H 0.151 0.849 43 H 0.189 0.811 44 H 0.180 0.820 45 H 0.125 0.875 46 H 0.065 0.935 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 20.995 -6.086 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.099 4.099 6 N -0.226 5.226 7 C -0.005 4.005 8 C -0.276 4.276 9 C -0.091 4.091 10 N -0.124 5.124 11 C 0.120 3.880 12 C -0.586 4.586 13 H 0.043 0.957 14 C -0.182 4.182 15 N -0.579 5.579 16 Si 0.775 3.225 17 H -0.175 1.175 18 H -0.205 1.205 19 H -0.165 1.165 20 N -0.135 5.135 21 C -0.078 4.078 22 C 0.028 3.972 23 C -0.177 4.177 24 C -0.053 4.053 25 N -0.211 5.211 26 C -0.054 4.054 27 C -0.184 4.184 28 C -0.091 4.091 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.216 0.784 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.168 0.832 43 H 0.206 0.794 44 H 0.197 0.803 45 H 0.143 0.857 46 H 0.083 0.917 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.776 20.963 -5.086 22.093 hybrid contribution -0.351 -2.155 -1.203 2.493 sum 4.425 18.808 -6.289 20.319 Atomic orbital electron populations 1.21713 0.94661 1.00803 1.02367 1.22063 0.95418 0.99591 0.94280 0.89549 1.22447 0.96852 0.98813 0.98047 1.22945 0.99024 0.98542 0.89427 1.65170 1.23321 1.31402 1.02689 1.20804 0.93650 0.86147 0.99900 1.20787 1.03532 1.02339 1.00956 1.22930 0.91882 0.92848 1.01420 1.48802 1.20946 1.20001 1.22653 1.19838 0.96610 0.78379 0.93218 1.21166 1.46816 0.95734 0.94871 0.95708 1.25906 0.93944 0.95090 1.03301 1.70046 1.46896 1.04459 1.36458 0.85637 0.79411 0.79534 0.77924 1.17534 1.20527 1.16518 1.77663 1.23305 1.08047 1.04437 1.20800 0.95757 0.94021 0.97202 1.18259 0.94445 0.92490 0.92050 1.22350 1.00061 0.98859 0.96420 1.23135 0.94442 0.92915 0.94765 1.67715 1.00592 1.25773 1.26984 1.22964 0.99203 0.92804 0.90459 1.22245 0.96616 0.99271 1.00302 1.23417 0.89782 0.98242 0.97616 0.94720 0.91264 0.92311 0.92712 0.89675 0.94017 0.89154 0.88723 0.89245 0.78388 0.94038 0.90409 0.91788 0.83175 0.79385 0.80316 0.85723 0.91672 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.15 71.98 0.66 -2.10 16 2 C -0.09 -1.93 3.66 -9.59 -0.04 -1.97 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -2.40 6.51 31.48 0.20 -2.19 16 5 C 0.03 0.58 6.46 86.45 0.56 1.14 16 6 N -0.50 -11.33 5.54 -887.56 -4.91 -16.24 16 7 C 0.12 2.87 5.68 85.56 0.49 3.36 16 8 C -0.26 -8.03 4.02 -19.95 -0.08 -8.11 16 9 C 0.06 1.87 9.96 83.47 0.83 2.70 16 10 N -0.34 -14.62 3.67 -351.91 -1.29 -15.91 16 11 C 0.24 10.85 5.33 85.63 0.46 11.31 16 12 C -0.55 -31.35 9.79 25.60 0.25 -31.10 16 13 H 0.02 1.67 8.06 -2.91 -0.02 1.64 16 14 C 0.02 0.95 5.47 84.65 0.46 1.41 16 15 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 16 Si 0.95 40.31 27.47 68.60 1.88 42.19 16 17 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 20 N -0.31 -13.98 12.44 -48.17 -0.60 -14.58 16 21 C 0.09 3.11 5.23 42.51 0.22 3.33 16 22 C 0.04 1.15 3.79 -19.84 -0.08 1.07 16 23 C -0.16 -3.87 8.84 22.57 0.20 -3.67 16 24 C 0.10 2.28 11.17 84.61 0.95 3.23 16 25 N -0.50 -12.51 10.35 -196.14 -2.03 -14.54 16 26 C 0.10 2.49 11.17 84.61 0.95 3.43 16 27 C -0.16 -4.69 9.80 22.58 0.22 -4.47 16 28 C 0.04 0.91 4.61 86.65 0.40 1.31 16 29 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.17 7.85 -2.39 -0.02 1.15 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 0.93 5.77 -2.38 -0.01 0.92 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 37 H 0.09 1.95 5.44 -2.39 -0.01 1.93 16 38 H 0.20 4.94 7.90 -2.91 -0.02 4.91 16 39 H 0.04 1.87 7.20 -2.39 -0.02 1.86 16 40 H 0.08 3.04 7.50 -2.39 -0.02 3.02 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.15 3.24 6.40 -2.91 -0.02 3.22 16 43 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 44 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 46 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 47 H 0.05 1.34 4.01 -2.39 -0.01 1.33 16 Total: -1.00 -72.18 372.43 0.91 -71.26 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.91 Total: 26.56 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 6.65 Total: -21.32 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -8.53 Total: -118.69 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Total: -72.18 0.91 -71.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279452381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.112 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds