Wall clock time and date at job start Tue Mar 31 2020 15:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.72979 * 2 1 4 4 C 1.54939 * 110.66529 * 236.90775 * 2 1 3 5 5 C 1.54596 * 102.92138 * 204.15119 * 4 2 1 6 6 C 1.53994 * 105.13921 * 21.95563 * 5 4 2 7 7 N 1.47902 * 107.05824 * 1.22423 * 6 5 4 8 8 C 1.46896 * 110.99902 * 214.15108 * 7 6 5 9 9 C 1.50705 * 109.46946 * 61.96221 * 8 7 6 10 10 C 1.35070 * 126.06888 * 351.96769 * 9 8 7 11 11 N 1.35064 * 107.98167 * 180.15990 * 10 9 8 12 12 C 1.46495 * 125.92569 * 179.83075 * 11 10 9 13 13 C 1.50705 * 109.46909 * 124.71939 * 12 11 10 14 14 H 1.08004 * 119.99443 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00164 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99918 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47105 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47136 * 59.99813 * 17 15 13 20 20 H 1.48501 * 109.47074 * 300.00268 * 17 15 13 21 21 N 1.40067 * 108.14018 * 359.57627 * 11 10 9 22 22 C 1.31646 * 108.10403 * 0.25920 * 21 11 10 23 23 C 1.48374 * 126.04309 * 180.02562 * 22 21 11 24 24 C 1.39770 * 120.90313 * 136.59842 * 23 22 21 25 25 C 1.37966 * 119.02048 * 179.73213 * 24 23 22 26 26 N 1.31939 * 120.87733 * 0.56250 * 25 24 23 27 27 C 1.31937 * 122.00161 * 359.71259 * 26 25 24 28 28 C 1.37953 * 120.88460 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46346 * 295.76804 * 1 2 3 30 30 H 1.09004 * 109.46927 * 55.76552 * 1 2 3 31 31 H 1.08990 * 109.47309 * 175.77073 * 1 2 3 32 32 H 1.08992 * 110.72457 * 85.79246 * 4 2 1 33 33 H 1.09010 * 110.72031 * 322.50845 * 4 2 1 34 34 H 1.08997 * 110.31131 * 263.03461 * 5 4 2 35 35 H 1.09005 * 110.39081 * 140.91161 * 5 4 2 36 36 H 1.09002 * 109.91716 * 241.86936 * 6 5 4 37 37 H 1.09002 * 110.08025 * 120.67010 * 6 5 4 38 38 H 1.08994 * 109.47927 * 301.96313 * 8 7 6 39 39 H 1.09002 * 109.47269 * 181.95340 * 8 7 6 40 40 H 1.07998 * 126.01466 * 0.03071 * 10 9 8 41 41 H 1.08996 * 109.47435 * 4.72272 * 12 11 10 42 42 H 1.09008 * 109.47437 * 244.71470 * 12 11 10 43 43 H 0.96992 * 120.00415 * 0.02562 * 16 15 13 44 44 H 1.08004 * 120.49297 * 0.02562 * 24 23 22 45 45 H 1.07993 * 119.56319 * 180.29869 * 25 24 23 46 46 H 1.08003 * 119.55318 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.49020 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0195 0.0000 4 6 2.0768 -0.7915 -1.2145 5 6 3.4853 -1.2197 -0.7424 6 6 3.4279 -1.1648 0.7955 7 7 2.0543 -0.7589 1.1642 8 6 2.0581 0.0718 2.3757 9 6 2.8392 1.3343 2.1166 10 6 3.5740 1.6030 1.0156 11 7 4.1184 2.8298 1.1668 12 6 4.9910 3.5075 0.2048 13 6 4.4088 4.8543 -0.1394 14 1 3.4817 5.1735 0.3136 15 6 5.0601 5.6793 -1.0317 16 7 6.1891 5.2907 -1.5829 17 14 4.3388 7.3489 -1.4578 18 1 5.2231 8.0359 -2.4331 19 1 4.2284 8.1696 -0.2251 20 1 2.9909 7.1681 -2.0543 21 7 3.6992 3.3439 2.4004 22 6 2.9278 2.4462 2.9769 23 6 2.2679 2.5819 4.2988 24 6 0.9393 2.1883 4.4816 25 6 0.3658 2.3265 5.7288 26 7 1.0508 2.8322 6.7367 27 6 2.3047 3.2208 6.6049 28 6 2.9559 3.1127 5.3935 29 1 -0.3632 0.4468 0.9255 30 1 -0.3633 0.5782 -0.8497 31 1 -0.3633 -1.0248 -0.0758 32 1 2.1430 -0.1512 -2.0941 33 1 1.4560 -1.6643 -1.4172 34 1 4.2374 -0.5259 -1.1180 35 1 3.7061 -2.2334 -1.0768 36 1 4.1442 -0.4323 1.1679 37 1 3.6499 -2.1467 1.2136 38 1 2.5211 -0.4804 3.1935 39 1 1.0331 0.3275 2.6442 40 1 3.7051 0.9508 0.1648 41 1 5.0719 2.9048 -0.6998 42 1 5.9804 3.6406 0.6425 43 1 6.5635 4.4236 -1.3619 44 1 0.3713 1.7775 3.6599 45 1 -0.6586 2.0207 5.8811 46 1 2.8283 3.6290 7.4568 47 1 3.9823 3.4332 5.2926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279490918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:32 Heat of formation + Delta-G solvation = 120.963504 kcal Electronic energy + Delta-G solvation = -28160.003421 eV Core-core repulsion = 24537.425823 eV Total energy + Delta-G solvation = -3622.577598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37781 -39.80827 -38.90278 -34.60889 -33.20319 -32.79513 -31.39931 -31.19596 -30.78075 -29.24889 -27.21024 -25.72876 -24.85884 -24.20437 -23.29311 -22.46738 -20.98207 -20.57210 -20.10570 -19.41855 -17.27825 -16.97317 -16.06339 -15.98374 -15.60120 -15.42454 -15.20678 -14.66124 -14.39339 -13.88893 -13.88083 -13.78440 -13.67900 -13.44752 -13.19467 -12.81322 -12.74640 -12.50887 -12.22460 -12.00830 -11.89364 -11.70618 -11.33992 -11.30003 -11.20928 -11.08868 -10.85634 -10.72453 -10.56606 -10.30589 -10.23250 -9.90518 -9.48728 -9.16864 -9.12769 -8.70269 -8.52640 -8.36233 -7.79387 -6.70196 -4.45459 1.09724 1.19303 2.40530 3.01728 3.16317 3.30772 3.32904 3.51788 3.91981 4.02028 4.30775 4.47027 4.55135 4.60164 4.69283 4.87849 4.95415 5.03299 5.10846 5.12976 5.21710 5.24038 5.38940 5.40655 5.49485 5.53825 5.54589 5.67796 5.71588 5.75255 5.79798 5.82677 5.89504 5.95961 5.97933 6.00400 6.10251 6.14672 6.26586 6.28661 6.33866 6.47564 6.60381 6.70787 6.94915 6.95694 7.11686 7.47645 7.56969 7.98290 8.18419 8.22797 8.47433 9.22859 10.67520 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.005182 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.419773 B = 5401.700729 C = 7986.215911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.040 3.960 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.136 4.136 6 C 0.020 3.980 7 N -0.505 5.505 8 C 0.129 3.871 9 C -0.270 4.270 10 C 0.039 3.961 11 N -0.314 5.314 12 C 0.247 3.753 13 C -0.610 4.610 14 H 0.064 0.936 15 C 0.026 3.974 16 N -0.901 5.901 17 Si 1.075 2.925 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.250 5.250 22 C 0.071 3.929 23 C 0.057 3.943 24 C -0.156 4.156 25 C 0.097 3.903 26 N -0.491 5.491 27 C 0.097 3.903 28 C -0.151 4.151 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.174 0.826 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.267 0.733 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -12.668 6.522 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.174 4.174 6 C -0.108 4.108 7 N -0.228 5.228 8 C -0.001 4.001 9 C -0.284 4.284 10 C -0.109 4.109 11 N -0.094 5.094 12 C 0.129 3.871 13 C -0.649 4.649 14 H 0.082 0.918 15 C -0.179 4.179 16 N -0.536 5.536 17 Si 0.902 3.098 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.212 1.212 21 N -0.075 5.075 22 C -0.092 4.092 23 C 0.047 3.953 24 C -0.177 4.177 25 C -0.059 4.059 26 N -0.201 5.201 27 C -0.059 4.059 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.191 0.809 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.173 0.827 46 H 0.173 0.827 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.519 -10.443 6.483 14.956 hybrid contribution 0.546 -1.498 -0.293 1.621 sum -7.973 -11.942 6.189 15.636 Atomic orbital electron populations 1.21617 0.93962 1.01791 1.01495 1.23181 0.96206 0.97584 0.89838 0.90638 1.22556 0.95846 1.00085 0.97383 1.22441 0.97656 1.02076 0.95264 1.23111 0.90964 1.01478 0.95273 1.64960 1.18277 1.36412 1.03161 1.20624 0.98675 0.87904 0.92873 1.20531 1.10898 1.00251 0.96707 1.22673 0.98498 0.89633 1.00072 1.49210 1.35237 1.11146 1.13809 1.19822 0.88610 0.94184 0.84514 1.22054 1.11728 1.01055 1.30026 0.91820 1.25926 0.94726 1.04338 0.92903 1.70861 1.18324 1.22276 1.42126 0.83436 0.75474 0.74210 0.76704 1.20370 1.21019 1.21155 1.77680 1.14719 1.20512 0.94600 1.20272 1.00637 0.93622 0.94667 1.18158 0.92572 0.94501 0.90118 1.22171 0.94603 1.01792 0.99169 1.22611 0.99723 0.95397 0.88218 1.67618 1.08309 1.10542 1.33631 1.22636 0.90620 0.96093 0.96552 1.22262 1.01906 0.99854 0.93145 0.92743 0.92489 0.92237 0.91065 0.90765 0.91507 0.90871 0.92194 0.90564 0.90655 0.90211 0.80895 0.93844 0.94534 0.92308 0.84576 0.82684 0.82717 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.52 37.16 0.35 -1.12 16 2 C 0.04 0.51 2.28 -65.79 -0.15 0.36 16 3 H 0.08 1.18 4.60 -51.93 -0.24 0.94 16 4 C -0.12 -1.35 6.48 -24.87 -0.16 -1.51 16 5 C -0.14 -1.50 6.20 -25.37 -0.16 -1.65 16 6 C 0.02 0.24 5.82 -2.75 -0.02 0.22 16 7 N -0.51 -6.38 5.23 -224.06 -1.17 -7.55 16 8 C 0.13 1.72 5.30 -4.98 -0.03 1.69 16 9 C -0.27 -4.48 5.10 -104.75 -0.53 -5.01 16 10 C 0.04 0.72 7.07 -17.26 -0.12 0.59 16 11 N -0.31 -6.91 3.67 -62.58 -0.23 -7.14 16 12 C 0.25 6.01 5.57 -5.19 -0.03 5.98 16 13 C -0.61 -16.70 9.23 -34.44 -0.32 -17.02 16 14 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 15 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 16 N -0.90 -25.61 13.65 55.43 0.76 -24.85 16 17 Si 1.08 24.50 29.90 -169.99 -5.08 19.42 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 N -0.25 -5.55 12.44 33.42 0.42 -5.13 16 22 C 0.07 1.31 6.72 -82.78 -0.56 0.76 16 23 C 0.06 0.88 5.76 -104.58 -0.60 0.28 16 24 C -0.16 -2.03 9.09 -39.11 -0.36 -2.39 16 25 C 0.10 1.16 11.17 -17.61 -0.20 0.97 16 26 N -0.49 -6.61 10.35 -13.35 -0.14 -6.74 16 27 C 0.10 1.25 11.17 -17.61 -0.20 1.05 16 28 C -0.15 -2.18 9.89 -39.11 -0.39 -2.57 16 29 H 0.05 0.61 7.47 -51.93 -0.39 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.76 8.01 -51.92 -0.42 0.34 16 34 H 0.07 0.76 7.50 -51.93 -0.39 0.37 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.82 5.08 -51.93 -0.26 0.56 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.99 5.51 -51.93 -0.29 0.70 16 40 H 0.17 2.82 3.60 -52.49 -0.19 2.63 16 41 H 0.04 1.03 7.93 -51.93 -0.41 0.62 16 42 H 0.04 0.93 8.01 -51.92 -0.42 0.52 16 43 H 0.27 7.40 7.22 -40.82 -0.29 7.10 16 44 H 0.14 1.57 6.38 -52.48 -0.33 1.23 16 45 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 47 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -30.51 370.48 -10.06 -40.57 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.64 Total: 4.60 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.55 Total: -18.76 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.37 Total: -51.42 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.51 -10.06 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279490918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.534 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds