Wall clock time and date at job start Tue Mar 31 2020 15:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.72979 * 2 1 4 4 C 1.54939 * 110.66529 * 236.90775 * 2 1 3 5 5 C 1.54596 * 102.92138 * 204.15119 * 4 2 1 6 6 C 1.53994 * 105.13921 * 21.95563 * 5 4 2 7 7 N 1.47902 * 107.05824 * 1.22423 * 6 5 4 8 8 C 1.46896 * 110.99902 * 214.15108 * 7 6 5 9 9 C 1.50705 * 109.46946 * 61.96221 * 8 7 6 10 10 C 1.35070 * 126.06888 * 351.96769 * 9 8 7 11 11 N 1.35064 * 107.98167 * 180.15990 * 10 9 8 12 12 C 1.46495 * 125.92569 * 179.83075 * 11 10 9 13 13 C 1.50705 * 109.46909 * 124.71939 * 12 11 10 14 14 H 1.08004 * 119.99443 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00164 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99918 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47105 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47136 * 59.99813 * 17 15 13 20 20 H 1.48501 * 109.47074 * 300.00268 * 17 15 13 21 21 N 1.40067 * 108.14018 * 359.57627 * 11 10 9 22 22 C 1.31646 * 108.10403 * 0.25920 * 21 11 10 23 23 C 1.48374 * 126.04309 * 180.02562 * 22 21 11 24 24 C 1.39770 * 120.90313 * 136.59842 * 23 22 21 25 25 C 1.37966 * 119.02048 * 179.73213 * 24 23 22 26 26 N 1.31939 * 120.87733 * 0.56250 * 25 24 23 27 27 C 1.31937 * 122.00161 * 359.71259 * 26 25 24 28 28 C 1.37953 * 120.88460 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46346 * 295.76804 * 1 2 3 30 30 H 1.09004 * 109.46927 * 55.76552 * 1 2 3 31 31 H 1.08990 * 109.47309 * 175.77073 * 1 2 3 32 32 H 1.08992 * 110.72457 * 85.79246 * 4 2 1 33 33 H 1.09010 * 110.72031 * 322.50845 * 4 2 1 34 34 H 1.08997 * 110.31131 * 263.03461 * 5 4 2 35 35 H 1.09005 * 110.39081 * 140.91161 * 5 4 2 36 36 H 1.09002 * 109.91716 * 241.86936 * 6 5 4 37 37 H 1.09002 * 110.08025 * 120.67010 * 6 5 4 38 38 H 1.08994 * 109.47927 * 301.96313 * 8 7 6 39 39 H 1.09002 * 109.47269 * 181.95340 * 8 7 6 40 40 H 1.07998 * 126.01466 * 0.03071 * 10 9 8 41 41 H 1.08996 * 109.47435 * 4.72272 * 12 11 10 42 42 H 1.09008 * 109.47437 * 244.71470 * 12 11 10 43 43 H 0.96992 * 120.00415 * 0.02562 * 16 15 13 44 44 H 1.08004 * 120.49297 * 0.02562 * 24 23 22 45 45 H 1.07993 * 119.56319 * 180.29869 * 25 24 23 46 46 H 1.08003 * 119.55318 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.49020 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0195 0.0000 4 6 2.0768 -0.7915 -1.2145 5 6 3.4853 -1.2197 -0.7424 6 6 3.4279 -1.1648 0.7955 7 7 2.0543 -0.7589 1.1642 8 6 2.0581 0.0718 2.3757 9 6 2.8392 1.3343 2.1166 10 6 3.5740 1.6030 1.0156 11 7 4.1184 2.8298 1.1668 12 6 4.9910 3.5075 0.2048 13 6 4.4088 4.8543 -0.1394 14 1 3.4817 5.1735 0.3136 15 6 5.0601 5.6793 -1.0317 16 7 6.1891 5.2907 -1.5829 17 14 4.3388 7.3489 -1.4578 18 1 5.2231 8.0359 -2.4331 19 1 4.2284 8.1696 -0.2251 20 1 2.9909 7.1681 -2.0543 21 7 3.6992 3.3439 2.4004 22 6 2.9278 2.4462 2.9769 23 6 2.2679 2.5819 4.2988 24 6 0.9393 2.1883 4.4816 25 6 0.3658 2.3265 5.7288 26 7 1.0508 2.8322 6.7367 27 6 2.3047 3.2208 6.6049 28 6 2.9559 3.1127 5.3935 29 1 -0.3632 0.4468 0.9255 30 1 -0.3633 0.5782 -0.8497 31 1 -0.3633 -1.0248 -0.0758 32 1 2.1430 -0.1512 -2.0941 33 1 1.4560 -1.6643 -1.4172 34 1 4.2374 -0.5259 -1.1180 35 1 3.7061 -2.2334 -1.0768 36 1 4.1442 -0.4323 1.1679 37 1 3.6499 -2.1467 1.2136 38 1 2.5211 -0.4804 3.1935 39 1 1.0331 0.3275 2.6442 40 1 3.7051 0.9508 0.1648 41 1 5.0719 2.9048 -0.6998 42 1 5.9804 3.6406 0.6425 43 1 6.5635 4.4236 -1.3619 44 1 0.3713 1.7775 3.6599 45 1 -0.6586 2.0207 5.8811 46 1 2.8283 3.6290 7.4568 47 1 3.9823 3.4332 5.2926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279490918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:31 Heat of formation + Delta-G solvation = 102.287531 kcal Electronic energy + Delta-G solvation = -28160.813272 eV Core-core repulsion = 24537.425823 eV Total energy + Delta-G solvation = -3623.387449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.76003 -40.85593 -40.03975 -36.37165 -34.79807 -33.88640 -32.36962 -32.33663 -32.16567 -30.62529 -28.81642 -26.81039 -26.07261 -25.74401 -24.36047 -24.02745 -22.04420 -21.77803 -21.37653 -20.69059 -19.21683 -18.25613 -17.18626 -17.14335 -16.85880 -16.52544 -16.40373 -15.99237 -15.71102 -15.46351 -15.21514 -14.95557 -14.83899 -14.60531 -14.49597 -14.18231 -14.09350 -13.61181 -13.58047 -13.44773 -13.32516 -12.83512 -12.72933 -12.68188 -12.31902 -12.18019 -12.14592 -12.01434 -11.74373 -11.64567 -11.53729 -11.40445 -10.89657 -10.77636 -10.52799 -10.13390 -10.04230 -9.45618 -9.29128 -8.86938 -6.65716 -0.06155 0.18177 0.91984 1.45079 1.50889 1.55147 1.69872 1.73719 2.40705 2.85455 2.92492 2.99382 3.28127 3.56480 3.58582 3.68714 3.77194 3.90826 3.99334 4.06222 4.08890 4.16153 4.22351 4.27458 4.37934 4.45546 4.50549 4.53523 4.57903 4.66968 4.72540 4.80202 4.84072 4.86528 4.90932 4.92339 4.99844 5.04307 5.10586 5.19341 5.28533 5.31130 5.39087 5.43293 5.57497 5.69933 5.77079 5.93462 6.04854 6.12702 6.29582 6.70601 6.97328 7.09917 8.49305 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.005182 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.419773 B = 5401.700729 C = 7986.215911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H 0.043 0.957 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.018 3.982 7 N -0.497 5.497 8 C 0.134 3.866 9 C -0.257 4.257 10 C 0.040 3.960 11 N -0.344 5.344 12 C 0.259 3.741 13 C -0.622 4.622 14 H 0.043 0.957 15 C -0.015 4.015 16 N -0.919 5.919 17 Si 1.117 2.883 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.270 1.270 21 N -0.306 5.306 22 C 0.080 3.920 23 C 0.028 3.972 24 C -0.150 4.150 25 C 0.105 3.895 26 N -0.502 5.502 27 C 0.102 3.898 28 C -0.163 4.163 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.188 0.812 41 H 0.047 0.953 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.152 0.848 45 H 0.194 0.806 46 H 0.182 0.818 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -14.127 7.295 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.155 4.155 5 C -0.173 4.173 6 C -0.110 4.110 7 N -0.219 5.219 8 C 0.005 3.995 9 C -0.271 4.271 10 C -0.107 4.107 11 N -0.124 5.124 12 C 0.140 3.860 13 C -0.660 4.660 14 H 0.061 0.939 15 C -0.215 4.215 16 N -0.554 5.554 17 Si 0.937 3.063 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.195 1.195 21 N -0.130 5.130 22 C -0.084 4.084 23 C 0.018 3.982 24 C -0.171 4.171 25 C -0.051 4.051 26 N -0.211 5.211 27 C -0.054 4.054 28 C -0.185 4.185 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.170 0.830 45 H 0.210 0.790 46 H 0.199 0.801 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.963 -11.938 7.267 17.762 hybrid contribution 1.241 -1.145 -0.417 1.740 sum -9.721 -13.084 6.850 17.681 Atomic orbital electron populations 1.21597 0.92588 1.02700 1.01614 1.23176 0.97327 0.96038 0.90657 0.93881 1.22562 0.96010 1.00391 0.96568 1.22451 0.97361 1.03058 0.94431 1.23152 0.90170 1.01577 0.96102 1.65035 1.18425 1.35608 1.02861 1.20725 0.98926 0.86346 0.93543 1.20928 1.09893 1.00886 0.95374 1.23067 0.98021 0.88473 1.01092 1.48929 1.36893 1.12492 1.14083 1.19381 0.88107 0.93483 0.85028 1.22210 1.11088 1.02654 1.30011 0.93869 1.27248 0.94429 1.07283 0.92520 1.70950 1.19150 1.22286 1.43048 0.82918 0.75656 0.70709 0.76969 1.19654 1.20277 1.19475 1.77595 1.17307 1.22770 0.95328 1.20839 0.98890 0.93144 0.95522 1.18316 0.94039 0.96737 0.89062 1.22338 0.93363 1.01152 1.00271 1.23201 1.00980 0.93759 0.87192 1.67731 1.08424 1.10760 1.34200 1.23000 0.90569 0.95233 0.96558 1.22292 1.01804 1.00484 0.93872 0.92806 0.92268 0.90861 0.91337 0.89085 0.92596 0.88773 0.94282 0.88997 0.89745 0.88637 0.79559 0.93571 0.96681 0.93028 0.83015 0.78969 0.80063 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.52 71.98 0.69 -1.90 16 2 C 0.04 0.87 2.28 45.27 0.10 0.97 16 3 H 0.04 1.34 4.60 -2.39 -0.01 1.33 16 4 C -0.12 -2.42 6.48 31.80 0.21 -2.22 16 5 C -0.14 -2.78 6.20 31.47 0.20 -2.58 16 6 C 0.02 0.41 5.82 86.45 0.50 0.91 16 7 N -0.50 -11.58 5.23 -862.78 -4.51 -16.09 16 8 C 0.13 3.35 5.30 85.56 0.45 3.80 16 9 C -0.26 -8.56 5.10 -19.95 -0.10 -8.66 16 10 C 0.04 1.50 7.07 83.47 0.59 2.09 16 11 N -0.34 -15.93 3.67 -351.90 -1.29 -17.22 16 12 C 0.26 13.40 5.57 85.64 0.48 13.88 16 13 C -0.62 -35.44 9.23 25.60 0.24 -35.21 16 14 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 15 C -0.01 -0.81 5.46 84.66 0.46 -0.35 16 16 N -0.92 -53.50 13.65 21.45 0.29 -53.20 16 17 Si 1.12 49.74 29.90 68.60 2.05 51.80 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 N -0.31 -14.24 12.44 -48.17 -0.60 -14.84 16 22 C 0.08 3.01 6.72 42.52 0.29 3.30 16 23 C 0.03 0.88 5.76 -19.84 -0.11 0.76 16 24 C -0.15 -3.58 9.09 22.58 0.21 -3.38 16 25 C 0.11 2.18 11.17 84.61 0.95 3.13 16 26 N -0.50 -12.16 10.35 -196.14 -2.03 -14.19 16 27 C 0.10 2.45 11.17 84.61 0.95 3.40 16 28 C -0.16 -4.71 9.89 22.57 0.22 -4.48 16 29 H 0.05 1.08 7.47 -2.39 -0.02 1.07 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.60 8.01 -2.38 -0.02 1.58 16 34 H 0.06 1.27 7.50 -2.39 -0.02 1.25 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.04 1.06 5.08 -2.39 -0.01 1.05 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 2.11 5.51 -2.39 -0.01 2.10 16 40 H 0.19 6.28 3.60 -2.91 -0.01 6.27 16 41 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 42 H 0.02 0.84 8.01 -2.38 -0.02 0.82 16 43 H 0.26 15.01 7.22 -92.71 -0.67 14.34 16 44 H 0.15 3.07 6.38 -2.91 -0.02 3.05 16 45 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 47 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -68.08 370.48 1.30 -66.79 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.08 Total: 23.50 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 6.30 Total: -26.55 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -8.14 Total: -115.54 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.80 kcal Total: -68.08 1.30 -66.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279490918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.074 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds