Wall clock time and date at job start Tue Mar 31 2020 14:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38138 * 120.03531 * 2 1 4 4 C 1.38256 * 120.06570 * 180.31499 * 3 2 1 5 5 C 1.38299 * 120.13602 * 359.68080 * 4 3 2 6 6 C 1.38093 * 120.06498 * 0.02562 * 5 4 3 7 7 C 1.38822 * 120.03409 * 179.69683 * 2 1 3 8 8 N 1.40186 * 120.06512 * 359.97438 * 7 2 1 9 9 N 1.40084 * 126.05427 * 309.79618 * 8 7 2 10 10 C 1.30874 * 108.21790 * 180.02562 * 9 8 7 11 11 C 1.39923 * 108.24345 * 359.76045 * 10 9 8 12 12 C 1.35228 * 126.04943 * 129.79186 * 8 7 2 13 13 C 1.50697 * 126.14487 * 359.97438 * 12 8 7 14 14 N 1.46904 * 109.47083 * 274.39438 * 13 12 8 15 15 C 1.46895 * 110.99971 * 189.99820 * 14 13 12 16 16 C 1.53237 * 109.34137 * 187.25247 * 15 14 13 17 17 N 1.47068 * 108.52444 * 306.17576 * 16 15 14 18 18 C 1.36937 * 120.88197 * 231.18698 * 17 16 15 19 19 H 1.08002 * 120.00062 * 27.47904 * 18 17 16 20 20 C 1.38815 * 119.99997 * 207.20904 * 18 17 16 21 21 N 1.31621 * 119.99999 * 16.06112 * 20 18 17 22 22 Si 1.86798 * 120.00015 * 196.06492 * 20 18 17 23 23 H 1.48500 * 109.46923 * 94.97860 * 22 20 18 24 24 H 1.48498 * 109.47291 * 214.97794 * 22 20 18 25 25 H 1.48503 * 109.47286 * 334.98288 * 22 20 18 26 26 C 1.47085 * 118.23764 * 51.45179 * 17 16 15 27 27 C 1.46894 * 111.00136 * 314.30628 * 14 13 12 28 28 H 1.09007 * 109.46963 * 271.17706 * 1 2 3 29 29 H 1.08997 * 109.47057 * 31.17909 * 1 2 3 30 30 H 1.09001 * 109.46873 * 151.18601 * 1 2 3 31 31 H 1.08005 * 119.96632 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.93199 * 179.69709 * 4 3 2 33 33 H 1.08001 * 119.96669 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.03474 * 180.02562 * 6 5 4 35 35 H 1.07999 * 125.88196 * 180.02562 * 10 9 8 36 36 H 1.08000 * 126.03400 * 180.27552 * 11 10 9 37 37 H 1.09000 * 109.47045 * 154.39647 * 13 12 8 38 38 H 1.09002 * 109.47161 * 34.39389 * 13 12 8 39 39 H 1.09004 * 109.49320 * 67.29561 * 15 14 13 40 40 H 1.08997 * 109.51854 * 307.23137 * 15 14 13 41 41 H 1.09003 * 109.62934 * 186.45771 * 16 15 14 42 42 H 1.09010 * 109.78604 * 65.97888 * 16 15 14 43 43 H 0.96998 * 119.99952 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.62334 * 68.25460 * 26 17 16 45 45 H 1.09004 * 109.62869 * 188.83387 * 26 17 16 46 46 H 1.08998 * 109.49191 * 292.70372 * 27 14 13 47 47 H 1.08994 * 109.49428 * 52.75801 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0066 5 6 4.2759 0.0009 -0.0065 6 6 3.5903 -1.1978 -0.0004 7 6 2.2018 -1.2018 0.0064 8 7 1.5030 -2.4170 0.0133 9 7 0.4639 -2.7656 0.8858 10 6 0.0656 -3.9754 0.5850 11 6 0.8331 -4.4344 -0.4911 12 6 1.7125 -3.4603 -0.8211 13 6 2.7375 -3.5245 -1.9240 14 7 2.1823 -2.9235 -3.1440 15 6 3.0535 -3.1770 -4.2992 16 6 2.5382 -2.3866 -5.5067 17 7 1.1204 -2.7190 -5.7122 18 6 0.6612 -3.1096 -6.9417 19 1 1.3278 -3.5984 -7.6369 20 6 -0.6626 -2.8825 -7.2925 21 7 -1.3893 -2.0296 -6.6019 22 14 -1.4125 -3.7873 -8.7444 23 1 -2.1189 -5.0005 -8.2603 24 1 -2.3772 -2.8966 -9.4381 25 1 -0.3377 -4.1843 -9.6891 26 6 0.2077 -2.6151 -4.5635 27 6 0.8158 -3.4022 -3.3919 28 1 -0.3633 0.0211 1.0275 29 1 -0.3633 0.8792 -0.5320 30 1 -0.3633 -0.9004 -0.4953 31 1 1.6584 2.1313 0.0004 32 1 4.1193 2.1329 -0.0115 33 1 5.3559 0.0047 -0.0112 34 1 4.1336 -2.1312 0.0001 35 1 -0.7230 -4.5234 1.0792 36 1 0.7409 -5.3969 -0.9724 37 1 2.9981 -4.5650 -2.1177 38 1 3.6302 -2.9763 -1.6227 39 1 3.0479 -4.2418 -4.5323 40 1 4.0701 -2.8613 -4.0648 41 1 3.1105 -2.6585 -6.3936 42 1 2.6401 -1.3176 -5.3187 43 1 -2.3142 -1.8705 -6.8473 44 1 0.0896 -1.5684 -4.2833 45 1 -0.7618 -3.0383 -4.8267 46 1 0.8413 -4.4638 -3.6376 47 1 0.2095 -3.2500 -2.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279616222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:29 Heat of formation + Delta-G solvation = 149.159610 kcal Electronic energy + Delta-G solvation = -28574.200480 eV Core-core repulsion = 24952.845557 eV Total energy + Delta-G solvation = -3621.354923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63046 -39.13773 -37.99545 -34.62917 -33.52948 -32.75261 -31.72474 -30.16426 -29.85092 -29.17744 -27.22353 -26.78677 -24.72999 -23.20888 -22.64368 -22.23435 -22.04367 -20.63240 -19.73031 -19.06469 -17.33769 -16.71032 -16.07134 -15.97991 -15.27572 -14.86948 -14.68606 -14.46182 -14.09625 -14.03897 -13.76625 -13.56382 -13.42323 -13.34303 -13.22687 -12.99889 -12.96208 -12.33439 -12.08699 -12.05178 -11.69758 -11.46224 -11.36275 -11.20311 -11.05361 -10.76037 -10.63469 -10.47145 -10.30201 -10.05664 -9.82075 -9.77101 -9.58881 -8.88736 -8.75979 -8.49744 -8.19420 -7.82785 -6.65058 -5.76466 -3.18961 0.97036 1.25406 2.00679 2.50232 2.85911 3.38148 3.45042 3.46535 3.59778 4.40355 4.51273 4.62489 4.68786 4.73987 4.89702 4.93630 5.12463 5.20524 5.36637 5.41007 5.42698 5.45127 5.58324 5.65143 5.70472 5.75085 5.78556 5.84449 5.88722 5.93044 6.12460 6.16354 6.20842 6.24022 6.26102 6.35044 6.35413 6.44899 6.55045 6.64145 6.71466 6.75977 6.92524 7.23784 7.29627 7.51519 7.65659 7.71188 7.75073 7.82586 8.45152 9.22596 9.85776 10.44646 11.32080 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003792 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.365451 B = 7382.954315 C = 7733.510164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.063 4.063 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.114 4.114 7 C 0.158 3.842 8 N -0.314 5.314 9 N -0.289 5.289 10 C 0.050 3.950 11 C -0.265 4.265 12 C 0.109 3.891 13 C 0.106 3.894 14 N -0.523 5.523 15 C 0.046 3.954 16 C 0.150 3.850 17 N -0.595 5.595 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.182 3.818 27 C 0.033 3.967 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.185 0.815 36 H 0.148 0.852 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.088 0.912 46 H 0.026 0.974 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 1.083 16.026 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.135 4.135 7 C 0.067 3.933 8 N -0.091 5.091 9 N -0.108 5.108 10 C -0.136 4.136 11 C -0.295 4.295 12 C -0.016 4.016 13 C -0.023 4.023 14 N -0.249 5.249 15 C -0.084 4.084 16 C 0.023 3.977 17 N -0.318 5.318 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.056 3.944 27 C -0.095 4.095 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.202 0.798 36 H 0.166 0.834 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.106 0.894 46 H 0.044 0.956 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.921 2.708 16.797 19.211 hybrid contribution -0.356 -2.124 -1.411 2.574 sum 8.565 0.584 15.386 17.619 Atomic orbital electron populations 1.20728 0.90162 1.03193 1.02399 1.19866 0.96969 0.91406 0.98232 1.20955 0.94231 0.97066 1.00409 1.21184 0.94192 0.98216 0.99647 1.20912 0.99912 0.91584 1.00598 1.20995 0.91838 0.99155 1.01468 1.17152 0.89897 0.82520 1.03691 1.45576 1.27462 1.10794 1.25271 1.77500 1.03103 1.15575 1.14648 1.23897 0.99887 0.92860 0.97000 1.21290 1.02180 1.02279 1.03741 1.21044 0.99064 0.87980 0.93553 1.20887 0.94247 0.99008 0.88160 1.62159 1.03491 1.57781 1.01455 1.22643 0.95144 0.98791 0.91791 1.20947 0.87203 0.95951 0.93587 1.44139 1.02738 1.78233 1.06687 1.19214 0.95021 1.31125 0.92795 0.91644 1.25038 0.98474 0.97829 0.98297 1.70025 1.08559 1.34338 1.41880 0.86269 0.79054 0.79221 0.82215 1.21527 1.21752 1.20418 1.20928 0.93987 0.96363 0.83152 1.23077 0.88324 0.97627 1.00515 0.90825 0.91440 0.91208 0.85294 0.85586 0.85346 0.85674 0.79820 0.83442 0.92715 0.89974 0.95150 0.92008 0.92552 0.95752 0.93645 0.95877 0.89369 0.95594 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.09 36.00 0.33 -1.18 16 2 C -0.06 -0.89 5.90 -104.44 -0.62 -1.50 16 3 C -0.11 -1.27 9.70 -39.61 -0.38 -1.65 16 4 C -0.11 -1.18 10.04 -39.55 -0.40 -1.58 16 5 C -0.11 -1.17 10.04 -39.61 -0.40 -1.56 16 6 C -0.11 -1.42 8.46 -39.41 -0.33 -1.75 16 7 C 0.16 2.32 6.03 -83.59 -0.50 1.81 16 8 N -0.31 -4.84 3.02 -6.98 -0.02 -4.86 16 9 N -0.29 -4.43 10.98 30.64 0.34 -4.09 16 10 C 0.05 0.66 12.03 -17.33 -0.21 0.45 16 11 C -0.27 -3.70 9.38 -39.99 -0.38 -4.08 16 12 C 0.11 1.64 4.75 -82.14 -0.39 1.25 16 13 C 0.11 1.55 5.41 -4.98 -0.03 1.53 16 14 N -0.52 -9.39 4.77 -235.48 -1.12 -10.51 16 15 C 0.05 0.81 5.58 -3.70 -0.02 0.79 16 16 C 0.15 3.20 6.69 -3.61 -0.02 3.18 16 17 N -0.59 -15.21 3.03 -171.73 -0.52 -15.73 16 18 C -0.25 -6.98 9.63 -15.06 -0.15 -7.12 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 20 C 0.00 0.06 4.96 -17.43 -0.09 -0.03 16 21 N -0.90 -26.56 11.12 55.49 0.62 -25.94 16 22 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.18 4.52 5.44 -3.36 -0.02 4.50 16 27 C 0.03 0.68 5.04 -3.47 -0.02 0.66 16 28 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 29 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.07 1.15 6.89 -51.93 -0.36 0.79 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.39 6.87 -52.49 -0.36 1.03 16 35 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.08 1.09 5.54 -51.93 -0.29 0.80 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 41 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 42 H 0.02 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.43 6.11 -51.93 -0.32 2.11 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.29 5.72 -51.93 -0.30 0.99 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -31.91 372.55 -10.81 -42.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.07 Total: 2.28 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.62 Total: -6.29 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.71 Total: -61.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.91 -10.81 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279616222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.887 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds