Wall clock time and date at job start Tue Mar 31 2020 14:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38138 * 120.03531 * 2 1 4 4 C 1.38256 * 120.06570 * 180.31499 * 3 2 1 5 5 C 1.38299 * 120.13602 * 359.68080 * 4 3 2 6 6 C 1.38093 * 120.06498 * 0.02562 * 5 4 3 7 7 C 1.38822 * 120.03409 * 179.69683 * 2 1 3 8 8 N 1.40186 * 120.06512 * 359.97438 * 7 2 1 9 9 N 1.40084 * 126.05427 * 309.79618 * 8 7 2 10 10 C 1.30874 * 108.21790 * 180.02562 * 9 8 7 11 11 C 1.39923 * 108.24345 * 359.76045 * 10 9 8 12 12 C 1.35228 * 126.04943 * 129.79186 * 8 7 2 13 13 C 1.50697 * 126.14487 * 359.97438 * 12 8 7 14 14 N 1.46904 * 109.47083 * 274.39438 * 13 12 8 15 15 C 1.46895 * 110.99971 * 189.99820 * 14 13 12 16 16 C 1.53237 * 109.34137 * 187.25247 * 15 14 13 17 17 N 1.47068 * 108.52444 * 306.17576 * 16 15 14 18 18 C 1.36937 * 120.88197 * 231.18698 * 17 16 15 19 19 H 1.08002 * 120.00062 * 27.47904 * 18 17 16 20 20 C 1.38815 * 119.99997 * 207.20904 * 18 17 16 21 21 N 1.31621 * 119.99999 * 16.06112 * 20 18 17 22 22 Si 1.86798 * 120.00015 * 196.06492 * 20 18 17 23 23 H 1.48500 * 109.46923 * 94.97860 * 22 20 18 24 24 H 1.48498 * 109.47291 * 214.97794 * 22 20 18 25 25 H 1.48503 * 109.47286 * 334.98288 * 22 20 18 26 26 C 1.47085 * 118.23764 * 51.45179 * 17 16 15 27 27 C 1.46894 * 111.00136 * 314.30628 * 14 13 12 28 28 H 1.09007 * 109.46963 * 271.17706 * 1 2 3 29 29 H 1.08997 * 109.47057 * 31.17909 * 1 2 3 30 30 H 1.09001 * 109.46873 * 151.18601 * 1 2 3 31 31 H 1.08005 * 119.96632 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.93199 * 179.69709 * 4 3 2 33 33 H 1.08001 * 119.96669 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.03474 * 180.02562 * 6 5 4 35 35 H 1.07999 * 125.88196 * 180.02562 * 10 9 8 36 36 H 1.08000 * 126.03400 * 180.27552 * 11 10 9 37 37 H 1.09000 * 109.47045 * 154.39647 * 13 12 8 38 38 H 1.09002 * 109.47161 * 34.39389 * 13 12 8 39 39 H 1.09004 * 109.49320 * 67.29561 * 15 14 13 40 40 H 1.08997 * 109.51854 * 307.23137 * 15 14 13 41 41 H 1.09003 * 109.62934 * 186.45771 * 16 15 14 42 42 H 1.09010 * 109.78604 * 65.97888 * 16 15 14 43 43 H 0.96998 * 119.99952 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.62334 * 68.25460 * 26 17 16 45 45 H 1.09004 * 109.62869 * 188.83387 * 26 17 16 46 46 H 1.08998 * 109.49191 * 292.70372 * 27 14 13 47 47 H 1.08994 * 109.49428 * 52.75801 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0066 5 6 4.2759 0.0009 -0.0065 6 6 3.5903 -1.1978 -0.0004 7 6 2.2018 -1.2018 0.0064 8 7 1.5030 -2.4170 0.0133 9 7 0.4639 -2.7656 0.8858 10 6 0.0656 -3.9754 0.5850 11 6 0.8331 -4.4344 -0.4911 12 6 1.7125 -3.4603 -0.8211 13 6 2.7375 -3.5245 -1.9240 14 7 2.1823 -2.9235 -3.1440 15 6 3.0535 -3.1770 -4.2992 16 6 2.5382 -2.3866 -5.5067 17 7 1.1204 -2.7190 -5.7122 18 6 0.6612 -3.1096 -6.9417 19 1 1.3278 -3.5984 -7.6369 20 6 -0.6626 -2.8825 -7.2925 21 7 -1.3893 -2.0296 -6.6019 22 14 -1.4125 -3.7873 -8.7444 23 1 -2.1189 -5.0005 -8.2603 24 1 -2.3772 -2.8966 -9.4381 25 1 -0.3377 -4.1843 -9.6891 26 6 0.2077 -2.6151 -4.5635 27 6 0.8158 -3.4022 -3.3919 28 1 -0.3633 0.0211 1.0275 29 1 -0.3633 0.8792 -0.5320 30 1 -0.3633 -0.9004 -0.4953 31 1 1.6584 2.1313 0.0004 32 1 4.1193 2.1329 -0.0115 33 1 5.3559 0.0047 -0.0112 34 1 4.1336 -2.1312 0.0001 35 1 -0.7230 -4.5234 1.0792 36 1 0.7409 -5.3969 -0.9724 37 1 2.9981 -4.5650 -2.1177 38 1 3.6302 -2.9763 -1.6227 39 1 3.0479 -4.2418 -4.5323 40 1 4.0701 -2.8613 -4.0648 41 1 3.1105 -2.6585 -6.3936 42 1 2.6401 -1.3176 -5.3187 43 1 -2.3142 -1.8705 -6.8473 44 1 0.0896 -1.5684 -4.2833 45 1 -0.7618 -3.0383 -4.8267 46 1 0.8413 -4.4638 -3.6376 47 1 0.2095 -3.2500 -2.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279616222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:28 Heat of formation + Delta-G solvation = 130.785861 kcal Electronic energy + Delta-G solvation = -28574.997225 eV Core-core repulsion = 24952.845557 eV Total energy + Delta-G solvation = -3622.151668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68792 -40.06371 -39.57087 -36.37817 -34.49364 -33.89818 -33.36159 -31.74207 -31.44358 -30.13854 -28.79107 -27.80353 -26.38559 -24.38712 -24.31473 -23.75377 -23.04638 -21.65042 -20.90946 -20.65880 -18.83196 -18.22708 -17.28715 -16.91102 -16.80289 -16.31810 -15.91728 -15.84123 -15.46263 -15.28216 -15.20765 -14.97514 -14.80602 -14.72783 -14.50236 -14.28770 -14.11545 -13.52732 -13.39539 -13.16429 -13.09089 -13.00007 -12.87777 -12.64712 -12.35597 -12.26370 -12.13927 -12.05861 -11.89899 -11.71132 -11.63817 -11.46792 -10.81007 -10.61153 -9.90159 -9.75302 -9.27900 -9.17696 -8.70044 -7.88342 -5.34758 0.02348 0.36032 0.95479 1.45867 1.46978 1.49592 1.56615 1.80826 2.49795 2.70502 3.03679 3.27788 3.48709 3.66620 3.77031 3.81063 3.96679 4.04409 4.13802 4.24611 4.33158 4.34513 4.37673 4.47712 4.54505 4.59779 4.62066 4.65195 4.67213 4.68054 4.72562 4.80057 4.88755 4.92614 5.00320 5.11986 5.16417 5.18355 5.34273 5.34498 5.46636 5.52426 5.59815 5.63191 5.70162 5.84273 6.09329 6.14754 6.29058 6.36052 6.69245 7.11326 7.81941 8.36958 9.18485 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003792 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.365451 B = 7382.954315 C = 7733.510164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.106 4.106 6 C -0.123 4.123 7 C 0.127 3.873 8 N -0.318 5.318 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.271 4.271 12 C 0.091 3.909 13 C 0.113 3.887 14 N -0.534 5.534 15 C 0.057 3.943 16 C 0.145 3.855 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.071 0.929 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.193 3.807 27 C 0.060 3.940 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.215 0.785 36 H 0.161 0.839 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.011 0.989 43 H 0.249 0.751 44 H -0.014 1.014 45 H 0.054 0.946 46 H 0.025 0.975 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 0.528 16.458 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.143 4.143 7 C 0.037 3.963 8 N -0.095 5.095 9 N -0.135 5.135 10 C -0.137 4.137 11 C -0.301 4.301 12 C -0.035 4.035 13 C -0.015 4.015 14 N -0.260 5.260 15 C -0.072 4.072 16 C 0.019 3.981 17 N -0.336 5.336 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.189 1.189 26 C 0.067 3.933 27 C -0.070 4.070 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.154 0.846 35 H 0.232 0.768 36 H 0.178 0.822 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.004 0.996 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.481 2.148 17.242 20.826 hybrid contribution -1.073 -1.854 -1.501 2.616 sum 10.408 0.294 15.741 18.873 Atomic orbital electron populations 1.20601 0.91022 1.01722 1.02243 1.20051 0.96784 0.92521 1.00111 1.21250 0.95303 0.96866 0.99930 1.21608 0.93650 0.99712 0.97935 1.21355 1.01562 0.90798 0.98714 1.21234 0.90985 1.00555 1.01550 1.17555 0.91025 0.82408 1.05359 1.45698 1.27436 1.11125 1.25223 1.77451 1.03803 1.16586 1.15653 1.24443 1.00129 0.92364 0.96789 1.21565 1.01907 1.02712 1.03870 1.21243 0.99789 0.88424 0.94004 1.20914 0.94461 1.00050 0.86117 1.62026 1.02399 1.58664 1.02882 1.22501 0.96462 0.98203 0.90017 1.21125 0.85114 0.95857 0.95998 1.44406 1.04436 1.78491 1.06261 1.19588 0.95411 1.30683 0.93591 0.91092 1.25835 0.98978 0.98699 1.01173 1.70203 1.08493 1.36045 1.43758 0.85219 0.78174 0.77669 0.79214 1.21313 1.22248 1.18932 1.20595 0.93256 0.94527 0.84904 1.22590 0.89919 0.96341 0.98121 0.90478 0.90884 0.94409 0.83673 0.82383 0.82054 0.84597 0.76844 0.82160 0.90938 0.88106 0.94884 0.88195 0.91632 0.97072 0.94182 0.99610 0.92782 0.95723 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.90 9.09 71.24 0.65 -2.25 16 2 C -0.09 -2.63 5.90 -19.75 -0.12 -2.75 16 3 C -0.12 -2.56 9.70 22.25 0.22 -2.34 16 4 C -0.11 -1.97 10.04 22.29 0.22 -1.75 16 5 C -0.11 -1.88 10.04 22.25 0.22 -1.66 16 6 C -0.12 -2.81 8.46 22.38 0.19 -2.62 16 7 C 0.13 3.66 6.03 38.09 0.23 3.89 16 8 N -0.32 -9.75 3.02 -176.00 -0.53 -10.28 16 9 N -0.32 -9.76 10.98 -56.97 -0.63 -10.38 16 10 C 0.05 1.26 12.03 85.24 1.03 2.29 16 11 C -0.27 -7.32 9.38 22.00 0.21 -7.12 16 12 C 0.09 2.66 4.75 41.36 0.20 2.86 16 13 C 0.11 3.05 5.41 85.56 0.46 3.51 16 14 N -0.53 -18.48 4.77 -898.92 -4.29 -22.77 16 15 C 0.06 1.88 5.58 86.38 0.48 2.36 16 16 C 0.14 6.08 6.69 86.35 0.58 6.66 16 17 N -0.61 -31.77 3.03 -697.25 -2.11 -33.89 16 18 C -0.26 -14.68 9.63 84.03 0.81 -13.87 16 19 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 20 C -0.05 -2.95 4.96 84.86 0.42 -2.53 16 21 N -0.94 -57.22 11.12 21.65 0.24 -56.98 16 22 Si 0.97 45.42 29.58 68.60 2.03 47.45 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.19 10.00 5.44 86.50 0.47 10.47 16 27 C 0.06 2.43 5.04 86.54 0.44 2.87 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 30 H 0.04 1.32 6.89 -2.39 -0.02 1.30 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 2.68 6.87 -2.91 -0.02 2.66 16 35 H 0.22 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 38 H 0.10 2.36 5.54 -2.39 -0.01 2.35 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.10 2.58 8.11 -2.39 -0.02 2.57 16 41 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 42 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.05 3.14 6.11 -2.39 -0.01 3.12 16 46 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 2.60 5.72 -2.39 -0.01 2.59 16 Total: -1.00 -72.03 372.55 2.37 -69.66 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.96 Total: 19.17 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.70 Total: -1.97 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -7.32 Total: -134.31 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.03 2.37 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279616222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.447 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds