Wall clock time and date at job start Tue Mar 31 2020 14:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99954 * 2 1 4 4 H 1.08996 * 109.47217 * 30.00243 * 3 2 1 5 5 C 1.53006 * 109.46808 * 149.99890 * 3 2 1 6 6 N 1.46897 * 109.47051 * 300.09357 * 5 3 2 7 7 C 1.46900 * 110.99779 * 160.29703 * 6 5 3 8 8 C 1.50697 * 109.47140 * 202.02972 * 7 6 5 9 9 H 1.08003 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99822 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00129 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99843 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47008 * 59.99571 * 12 10 8 14 14 H 1.48498 * 109.47180 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46871 * 299.99780 * 12 10 8 16 16 C 1.46898 * 111.00257 * 284.24963 * 6 5 3 17 17 C 1.50701 * 109.47065 * 169.99883 * 16 6 5 18 18 C 1.38234 * 119.61674 * 94.98391 * 17 16 6 19 19 C 1.38621 * 119.16334 * 179.79180 * 18 17 16 20 20 C 1.38684 * 118.41900 * 0.46674 * 19 18 17 21 21 C 1.38177 * 119.15713 * 359.51384 * 20 19 18 22 22 N 1.31848 * 119.62268 * 274.99968 * 17 16 6 23 23 C 1.50700 * 109.47565 * 269.99854 * 3 2 1 24 24 C 1.38233 * 119.99916 * 324.73299 * 23 3 2 25 25 C 1.38229 * 120.00178 * 179.78874 * 24 23 3 26 26 C 1.38242 * 119.99822 * 0.43092 * 25 24 23 27 27 C 1.38238 * 119.99970 * 359.82188 * 26 25 24 28 28 C 1.38231 * 120.00026 * 144.99800 * 23 3 2 29 29 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47234 * 299.99841 * 1 2 3 31 31 H 1.09000 * 109.47152 * 59.99853 * 1 2 3 32 32 H 1.09007 * 109.46834 * 180.09431 * 5 3 2 33 33 H 1.09000 * 109.47132 * 60.09642 * 5 3 2 34 34 H 1.09001 * 109.47580 * 322.03515 * 7 6 5 35 35 H 1.09000 * 109.46939 * 82.03062 * 7 6 5 36 36 H 0.96999 * 119.99943 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.46844 * 50.00344 * 16 6 5 38 38 H 1.08996 * 109.47386 * 290.00264 * 16 6 5 39 39 H 1.08000 * 120.41472 * 359.97438 * 18 17 16 40 40 H 1.07996 * 120.79639 * 180.23233 * 19 18 17 41 41 H 1.07991 * 120.41503 * 179.77981 * 20 19 18 42 42 H 1.08006 * 119.61456 * 180.25297 * 21 20 19 43 43 H 1.08006 * 119.99719 * 359.97438 * 24 23 3 44 44 H 1.08005 * 120.00525 * 180.27034 * 25 24 23 45 45 H 1.07994 * 119.99933 * 179.83354 * 26 25 24 46 46 H 1.07998 * 120.00066 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00155 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1599 0.8137 2.1056 7 6 4.4156 0.3158 2.6830 8 6 4.1081 -0.6050 3.8356 9 1 3.0825 -0.8011 4.1115 10 6 5.1363 -1.1971 4.5382 11 7 6.3851 -0.9588 4.2020 12 14 4.7551 -2.3391 5.9665 13 1 3.9452 -3.4853 5.4813 14 1 6.0245 -2.8413 6.5511 15 1 3.9927 -1.5977 7.0030 16 6 2.5902 1.8871 2.9310 17 6 2.1733 1.3265 4.2662 18 6 3.0391 1.4060 5.3409 19 6 2.6443 0.8912 6.5660 20 6 1.3915 0.3042 6.6624 21 6 0.5802 0.2614 5.5446 22 7 0.9872 0.7656 4.3959 23 6 2.2146 1.7645 -1.4208 24 6 2.5650 0.8520 -2.3982 25 6 2.7482 1.2722 -3.7023 26 6 2.5897 2.6065 -4.0272 27 6 2.2444 3.5199 -3.0487 28 6 2.0570 3.0988 -1.7455 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8015 2.2594 0.7228 33 1 4.0247 0.5706 0.2065 34 1 4.9747 -0.2287 1.9221 35 1 5.0106 1.1569 3.0386 36 1 7.1084 -1.3750 4.6965 37 1 1.7211 2.3103 2.4272 38 1 3.3380 2.6657 3.0812 39 1 4.0097 1.8661 5.2283 40 1 3.2981 0.9426 7.4240 41 1 1.0527 -0.1103 7.6003 42 1 -0.3984 -0.1903 5.6124 43 1 2.6927 -0.1898 -2.1436 44 1 3.0177 0.5586 -4.4669 45 1 2.7355 2.9352 -5.0455 46 1 2.1210 4.5623 -3.3025 47 1 1.7870 3.8124 -0.9810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284365029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:58 Heat of formation + Delta-G solvation = 32.583736 kcal Electronic energy + Delta-G solvation = -28127.549335 eV Core-core repulsion = 24468.846551 eV Total energy + Delta-G solvation = -3658.702783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70523 -39.37335 -37.48694 -36.09327 -32.73012 -32.14152 -31.58390 -30.87283 -30.79217 -28.39052 -27.14053 -25.97895 -24.89625 -22.79306 -22.70251 -22.47583 -21.77120 -20.67645 -19.88372 -17.03747 -16.48706 -16.42260 -16.00276 -15.69290 -15.38353 -14.93841 -14.78400 -14.53209 -14.39497 -14.30469 -13.98752 -13.48840 -13.31907 -13.10708 -12.79707 -12.64129 -12.57108 -12.37322 -12.06709 -11.77177 -11.69544 -11.38893 -11.12235 -11.09111 -11.03284 -10.84687 -10.67372 -10.43451 -10.34986 -9.80716 -9.39090 -9.17986 -8.98775 -8.86757 -8.69411 -8.62566 -8.45704 -7.99485 -7.24629 -6.00609 -3.95302 1.37192 1.45977 1.90675 2.12178 3.32912 3.37385 3.42621 3.81565 4.15840 4.36613 4.51403 4.80609 4.95933 5.00947 5.02980 5.15366 5.23544 5.35711 5.45766 5.46643 5.50499 5.56966 5.60679 5.66867 5.76622 5.78436 5.83632 5.89007 5.89860 6.02766 6.05039 6.08670 6.12515 6.16917 6.35860 6.40778 6.49426 6.50821 6.55788 6.67570 6.88668 6.97465 7.04752 7.17430 7.26512 7.48404 7.64758 7.86056 8.10740 8.16677 8.53722 8.81808 9.08544 9.63721 11.09429 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003767 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.381319 B = 7430.634857 C = 8237.363965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.137 3.863 4 H 0.065 0.935 5 C 0.066 3.934 6 N -0.516 5.516 7 C 0.191 3.809 8 C -0.484 4.484 9 H 0.066 0.934 10 C 0.059 3.941 11 N -0.899 5.899 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.269 1.269 16 C 0.113 3.887 17 C 0.166 3.834 18 C -0.100 4.100 19 C -0.090 4.090 20 C -0.183 4.183 21 C 0.077 3.923 22 N -0.474 5.474 23 C -0.105 4.105 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.030 0.970 35 H -0.006 1.006 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 8.542 -7.981 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.078 3.922 4 H 0.083 0.917 5 C -0.062 4.062 6 N -0.241 5.241 7 C 0.067 3.933 8 C -0.522 4.522 9 H 0.084 0.916 10 C -0.142 4.142 11 N -0.539 5.539 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.194 1.194 16 C -0.015 4.015 17 C 0.027 3.973 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.203 4.203 21 C -0.079 4.079 22 N -0.184 5.184 23 C -0.106 4.106 24 C -0.110 4.110 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.132 4.132 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.074 7.884 -8.647 15.440 hybrid contribution 1.022 -0.025 1.581 1.882 sum -9.052 7.859 -7.066 13.915 Atomic orbital electron populations 1.22683 0.82063 1.02168 0.99155 1.88028 1.18640 1.25903 1.94414 1.21001 0.96010 0.85598 0.89559 0.91718 1.22111 0.94145 0.99059 0.90931 1.61974 1.31351 1.31650 0.99089 1.19858 0.84006 0.94451 0.95034 1.21213 0.93112 1.25371 1.12532 0.91576 1.24864 0.94917 0.96714 0.97680 1.69939 0.98462 1.44497 1.41013 0.86815 0.77379 0.81768 0.83229 1.20370 1.21631 1.19419 1.20820 0.98089 0.92121 0.90516 1.20649 0.89184 0.93262 0.94237 1.21706 0.99017 0.98637 0.92731 1.21299 0.95573 0.96818 0.97875 1.21870 0.96060 1.02453 0.99929 1.22368 0.99254 0.97891 0.88424 1.67332 1.17091 1.08807 1.25152 1.20610 0.99449 0.93710 0.96833 1.21091 0.97311 1.00324 0.92263 1.21179 1.00643 0.95897 0.96574 1.21119 1.00494 0.93618 0.99123 1.21065 1.00715 0.99357 0.93205 1.21027 1.00426 0.95252 0.96498 0.90230 0.93728 0.95385 0.94376 0.90194 0.95240 0.98867 0.93043 0.91295 0.94550 0.85583 0.86269 0.86393 0.84192 0.85257 0.86252 0.86492 0.86350 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.81 101.05 1.09 1.61 16 2 O -0.35 -6.15 9.37 -35.23 -0.33 -6.48 16 3 C 0.14 2.16 2.37 -27.88 -0.07 2.09 16 4 H 0.06 0.98 6.35 -51.93 -0.33 0.65 16 5 C 0.07 1.19 4.67 -3.82 -0.02 1.17 16 6 N -0.52 -10.89 4.29 -237.51 -1.02 -11.91 16 7 C 0.19 4.78 4.61 -4.98 -0.02 4.76 16 8 C -0.48 -13.01 6.11 -34.44 -0.21 -13.22 16 9 H 0.07 1.85 6.11 -52.48 -0.32 1.53 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 12 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.27 6.95 56.52 0.39 -5.87 16 16 C 0.11 2.15 5.09 -4.98 -0.03 2.12 16 17 C 0.17 3.35 4.11 -82.59 -0.34 3.01 16 18 C -0.10 -2.01 6.96 -39.44 -0.27 -2.29 16 19 C -0.09 -1.67 10.02 -39.28 -0.39 -2.06 16 20 C -0.18 -3.16 10.11 -39.44 -0.40 -3.56 16 21 C 0.08 1.37 11.18 -17.55 -0.20 1.17 16 22 N -0.47 -9.51 10.23 -9.47 -0.10 -9.60 16 23 C -0.11 -1.46 4.96 -104.63 -0.52 -1.98 16 24 C -0.09 -1.25 9.35 -39.59 -0.37 -1.62 16 25 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 26 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 28 C -0.11 -1.39 9.68 -39.58 -0.38 -1.77 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.63 8.00 -51.92 -0.42 0.22 16 33 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16 34 H 0.03 0.81 7.55 -51.93 -0.39 0.41 16 35 H -0.01 -0.17 7.83 -51.93 -0.41 -0.57 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.07 1.19 6.63 -51.93 -0.34 0.84 16 38 H 0.04 0.66 7.84 -51.93 -0.41 0.25 16 39 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 43 H 0.13 1.84 7.64 -52.48 -0.40 1.44 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -30.97 386.16 -10.53 -41.50 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.20 Total: 3.74 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.42 Total: -14.39 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.38 Total: -46.75 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.33 Total: -6.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.97 -10.53 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284365029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.080 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds