Wall clock time and date at job start Tue Mar 31 2020 14:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99954 * 2 1 4 4 H 1.08996 * 109.47217 * 30.00243 * 3 2 1 5 5 C 1.53006 * 109.46808 * 149.99890 * 3 2 1 6 6 N 1.46897 * 109.47051 * 300.09357 * 5 3 2 7 7 C 1.46900 * 110.99779 * 160.29703 * 6 5 3 8 8 C 1.50697 * 109.47140 * 202.02972 * 7 6 5 9 9 H 1.08003 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99822 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00129 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99843 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47008 * 59.99571 * 12 10 8 14 14 H 1.48498 * 109.47180 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46871 * 299.99780 * 12 10 8 16 16 C 1.46898 * 111.00257 * 284.24963 * 6 5 3 17 17 C 1.50701 * 109.47065 * 169.99883 * 16 6 5 18 18 C 1.38234 * 119.61674 * 94.98391 * 17 16 6 19 19 C 1.38621 * 119.16334 * 179.79180 * 18 17 16 20 20 C 1.38684 * 118.41900 * 0.46674 * 19 18 17 21 21 C 1.38177 * 119.15713 * 359.51384 * 20 19 18 22 22 N 1.31848 * 119.62268 * 274.99968 * 17 16 6 23 23 C 1.50700 * 109.47565 * 269.99854 * 3 2 1 24 24 C 1.38233 * 119.99916 * 324.73299 * 23 3 2 25 25 C 1.38229 * 120.00178 * 179.78874 * 24 23 3 26 26 C 1.38242 * 119.99822 * 0.43092 * 25 24 23 27 27 C 1.38238 * 119.99970 * 359.82188 * 26 25 24 28 28 C 1.38231 * 120.00026 * 144.99800 * 23 3 2 29 29 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47234 * 299.99841 * 1 2 3 31 31 H 1.09000 * 109.47152 * 59.99853 * 1 2 3 32 32 H 1.09007 * 109.46834 * 180.09431 * 5 3 2 33 33 H 1.09000 * 109.47132 * 60.09642 * 5 3 2 34 34 H 1.09001 * 109.47580 * 322.03515 * 7 6 5 35 35 H 1.09000 * 109.46939 * 82.03062 * 7 6 5 36 36 H 0.96999 * 119.99943 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.46844 * 50.00344 * 16 6 5 38 38 H 1.08996 * 109.47386 * 290.00264 * 16 6 5 39 39 H 1.08000 * 120.41472 * 359.97438 * 18 17 16 40 40 H 1.07996 * 120.79639 * 180.23233 * 19 18 17 41 41 H 1.07991 * 120.41503 * 179.77981 * 20 19 18 42 42 H 1.08006 * 119.61456 * 180.25297 * 21 20 19 43 43 H 1.08006 * 119.99719 * 359.97438 * 24 23 3 44 44 H 1.08005 * 120.00525 * 180.27034 * 25 24 23 45 45 H 1.07994 * 119.99933 * 179.83354 * 26 25 24 46 46 H 1.07998 * 120.00066 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00155 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1599 0.8137 2.1056 7 6 4.4156 0.3158 2.6830 8 6 4.1081 -0.6050 3.8356 9 1 3.0825 -0.8011 4.1115 10 6 5.1363 -1.1971 4.5382 11 7 6.3851 -0.9588 4.2020 12 14 4.7551 -2.3391 5.9665 13 1 3.9452 -3.4853 5.4813 14 1 6.0245 -2.8413 6.5511 15 1 3.9927 -1.5977 7.0030 16 6 2.5902 1.8871 2.9310 17 6 2.1733 1.3265 4.2662 18 6 3.0391 1.4060 5.3409 19 6 2.6443 0.8912 6.5660 20 6 1.3915 0.3042 6.6624 21 6 0.5802 0.2614 5.5446 22 7 0.9872 0.7656 4.3959 23 6 2.2146 1.7645 -1.4208 24 6 2.5650 0.8520 -2.3982 25 6 2.7482 1.2722 -3.7023 26 6 2.5897 2.6065 -4.0272 27 6 2.2444 3.5199 -3.0487 28 6 2.0570 3.0988 -1.7455 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8015 2.2594 0.7228 33 1 4.0247 0.5706 0.2065 34 1 4.9747 -0.2287 1.9221 35 1 5.0106 1.1569 3.0386 36 1 7.1084 -1.3750 4.6965 37 1 1.7211 2.3103 2.4272 38 1 3.3380 2.6657 3.0812 39 1 4.0097 1.8661 5.2283 40 1 3.2981 0.9426 7.4240 41 1 1.0527 -0.1103 7.6003 42 1 -0.3984 -0.1903 5.6124 43 1 2.6927 -0.1898 -2.1436 44 1 3.0177 0.5586 -4.4669 45 1 2.7355 2.9352 -5.0455 46 1 2.1210 4.5623 -3.3025 47 1 1.7870 3.8124 -0.9810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284365029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:57 Heat of formation + Delta-G solvation = 14.775929 kcal Electronic energy + Delta-G solvation = -28128.321539 eV Core-core repulsion = 24468.846551 eV Total energy + Delta-G solvation = -3659.474988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08357 -40.52783 -38.72490 -37.61953 -34.71154 -33.41945 -33.04529 -32.21660 -31.72999 -29.95122 -28.74482 -27.27104 -26.40873 -24.37285 -24.13247 -23.46010 -23.23888 -21.93984 -21.37511 -18.51214 -18.05540 -17.78531 -17.34542 -17.04125 -16.62188 -16.53206 -16.27460 -16.14036 -15.69151 -15.34854 -15.21443 -15.02343 -14.68232 -14.28349 -14.19564 -14.00236 -13.93053 -13.66410 -13.60564 -13.32854 -13.17687 -12.99770 -12.72360 -12.51194 -12.44725 -12.21075 -12.08650 -12.00524 -11.81903 -11.56402 -11.27083 -10.55868 -10.48272 -10.45002 -10.13197 -9.78211 -9.64626 -9.53551 -8.95241 -8.12362 -6.13220 0.42503 0.47152 0.54191 0.65864 1.37156 1.39967 1.46265 2.41971 2.84117 2.95969 2.98155 3.21709 3.46049 3.61658 3.88840 4.02778 4.05591 4.17053 4.19450 4.22632 4.33387 4.34487 4.39186 4.43957 4.48043 4.56925 4.61810 4.66010 4.69674 4.70341 4.76529 4.89808 4.94317 4.96735 5.05839 5.10991 5.18151 5.20099 5.24045 5.44887 5.54027 5.59588 5.65189 5.70058 5.74913 6.04420 6.13832 6.14932 6.35180 6.47515 6.63780 6.94776 7.35485 7.49808 8.97510 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003767 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.381319 B = 7430.634857 C = 8237.363965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.383 6.383 3 C 0.149 3.851 4 H 0.071 0.929 5 C 0.068 3.932 6 N -0.525 5.525 7 C 0.209 3.791 8 C -0.478 4.478 9 H 0.057 0.943 10 C 0.015 3.985 11 N -0.934 5.934 12 Si 0.930 3.070 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.245 1.245 16 C 0.115 3.885 17 C 0.149 3.851 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.180 4.180 21 C 0.072 3.928 22 N -0.493 5.493 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.057 0.943 34 H -0.005 1.005 35 H -0.025 1.025 36 H 0.259 0.741 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 9.403 -7.970 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.302 6.302 3 C 0.090 3.910 4 H 0.089 0.911 5 C -0.060 4.060 6 N -0.249 5.249 7 C 0.083 3.917 8 C -0.517 4.517 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.575 5.575 12 Si 0.756 3.244 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.169 1.169 16 C -0.013 4.013 17 C 0.010 3.990 18 C -0.141 4.141 19 C -0.123 4.123 20 C -0.199 4.199 21 C -0.084 4.084 22 N -0.203 5.203 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.138 4.138 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.013 0.987 35 H -0.008 1.008 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.191 0.809 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.089 8.767 -8.642 17.254 hybrid contribution 1.567 -0.257 1.531 2.206 sum -10.521 8.509 -7.111 15.287 Atomic orbital electron populations 1.22752 0.80549 1.02857 0.99721 1.87977 1.20413 1.27111 1.94666 1.20826 0.94260 0.85157 0.90732 0.91068 1.22139 0.95782 0.98853 0.89263 1.61890 1.29046 1.33434 1.00554 1.19483 0.85237 0.93304 0.93689 1.21266 0.92485 1.25182 1.12723 0.92444 1.25517 0.94708 0.98082 0.99947 1.70053 0.99280 1.45882 1.42326 0.86012 0.77292 0.79855 0.81221 1.21120 1.21557 1.16900 1.20861 0.98640 0.91511 0.90338 1.20746 0.89648 0.94063 0.94522 1.21701 0.98684 0.99871 0.93856 1.21619 0.96610 0.96348 0.97714 1.22271 0.95106 1.01284 1.01276 1.23009 1.00615 0.96875 0.87910 1.67357 1.17028 1.09370 1.26526 1.20457 1.01367 0.94767 0.95629 1.21079 0.98757 0.99635 0.93518 1.21423 1.00234 0.97127 0.96010 1.21512 0.98947 0.92952 1.00622 1.21443 0.99380 1.00902 0.92466 1.21244 1.00241 0.94547 0.97791 0.89567 0.94107 0.93708 0.93101 0.92481 0.98661 1.00777 0.93169 0.89440 0.94076 0.87052 0.84693 0.82783 0.80925 0.87082 0.84506 0.83531 0.83460 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.81 113.37 1.23 2.29 16 2 O -0.38 -13.67 9.37 -148.98 -1.40 -15.07 16 3 C 0.15 4.73 2.37 29.85 0.07 4.80 16 4 H 0.07 2.12 6.35 -2.39 -0.02 2.11 16 5 C 0.07 2.54 4.67 86.31 0.40 2.94 16 6 N -0.53 -22.91 4.29 -905.36 -3.89 -26.79 16 7 C 0.21 10.97 4.61 85.56 0.39 11.36 16 8 C -0.48 -26.32 6.11 25.60 0.16 -26.17 16 9 H 0.06 3.25 6.11 -2.91 -0.02 3.23 16 10 C 0.01 0.84 5.46 84.66 0.46 1.30 16 11 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 12 Si 0.93 44.10 29.54 68.60 2.03 46.12 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.25 -10.57 6.95 99.48 0.69 -9.87 16 16 C 0.11 4.41 5.09 85.56 0.44 4.84 16 17 C 0.15 5.99 4.11 42.56 0.17 6.17 16 18 C -0.12 -4.84 6.96 22.36 0.16 -4.68 16 19 C -0.10 -3.44 10.02 22.47 0.23 -3.22 16 20 C -0.18 -5.65 10.11 22.36 0.23 -5.42 16 21 C 0.07 2.39 11.18 84.67 0.95 3.34 16 22 N -0.49 -19.20 10.23 -183.89 -1.88 -21.08 16 23 C -0.12 -3.36 4.96 -19.87 -0.10 -3.45 16 24 C -0.11 -3.08 9.35 22.27 0.21 -2.88 16 25 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 26 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 27 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 28 C -0.12 -2.73 9.68 22.27 0.22 -2.51 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.74 8.00 -2.38 -0.02 1.72 16 33 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 34 H 0.00 -0.28 7.55 -2.39 -0.02 -0.29 16 35 H -0.03 -1.40 7.83 -2.39 -0.02 -1.42 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.09 2.98 6.63 -2.38 -0.02 2.97 16 38 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.15 3.69 8.06 -2.92 -0.02 3.67 16 42 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.11 3.37 7.64 -2.91 -0.02 3.35 16 44 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -68.37 386.16 1.95 -66.42 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.93 Total: 23.70 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.87 Total: -18.11 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -5.48 Total: -103.07 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.40 Total: -15.07 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.37 1.95 -66.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284365029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.196 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds