Wall clock time and date at job start Tue Mar 31 2020 14:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.53001 * 109.47170 * 293.95417 * 3 2 1 5 5 C 1.53000 * 109.46967 * 179.97438 * 4 3 2 6 6 S 1.81001 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.76203 * 99.99869 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00033 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99816 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00366 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99698 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47390 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47012 * 120.00437 * 11 9 7 14 14 H 1.48505 * 109.47029 * 240.00332 * 11 9 7 15 15 C 1.46894 * 110.99956 * 123.95546 * 2 1 3 16 16 C 1.52999 * 109.47355 * 66.04517 * 15 2 1 17 17 C 1.52995 * 109.47409 * 180.02562 * 16 15 2 18 18 N 1.46901 * 109.47356 * 180.02562 * 17 16 15 19 19 C 1.46902 * 111.00040 * 66.04114 * 18 17 16 20 20 C 1.46899 * 111.00103 * 189.99936 * 18 17 16 21 21 C 1.50703 * 109.47107 * 169.99758 * 20 18 17 22 22 C 1.34515 * 125.79060 * 89.99940 * 21 20 18 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69278 * 21 20 18 26 26 H 1.09002 * 109.47571 * 296.04485 * 1 2 3 27 27 H 1.09008 * 109.47117 * 56.04371 * 1 2 3 28 28 H 1.09003 * 109.47554 * 176.04374 * 1 2 3 29 29 H 1.09004 * 109.47075 * 53.95650 * 3 2 1 30 30 H 1.09002 * 109.46915 * 173.95479 * 3 2 1 31 31 H 1.08995 * 109.47185 * 299.99940 * 4 3 2 32 32 H 1.09002 * 109.47151 * 60.00207 * 4 3 2 33 33 H 1.09004 * 109.47224 * 300.00200 * 5 4 3 34 34 H 1.09002 * 109.46969 * 60.00153 * 5 4 3 35 35 H 0.96995 * 120.00501 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46896 * 306.04663 * 15 2 1 37 37 H 1.08997 * 109.47330 * 186.04507 * 15 2 1 38 38 H 1.08998 * 109.47156 * 59.99710 * 16 15 2 39 39 H 1.09008 * 109.47233 * 300.00000 * 16 15 2 40 40 H 1.08998 * 109.47352 * 59.99642 * 17 16 15 41 41 H 1.09007 * 109.47234 * 299.99857 * 17 16 15 42 42 H 1.09005 * 109.46528 * 183.95480 * 19 18 17 43 43 H 1.09000 * 109.46785 * 303.95569 * 19 18 17 44 44 H 1.08997 * 109.47044 * 63.96124 * 19 18 17 45 45 H 1.09002 * 109.47043 * 289.99738 * 20 18 17 46 46 H 1.09001 * 109.47354 * 49.99799 * 20 18 17 47 47 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 48 48 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 49 49 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1792 3.4861 -1.3179 6 16 1.7492 4.2974 -2.8778 7 6 2.4806 5.8783 -2.6121 8 1 2.9991 6.0849 -1.6875 9 6 2.3911 6.8577 -3.5915 10 7 1.7596 6.6058 -4.7185 11 14 3.1671 8.5335 -3.3100 12 1 3.8131 8.5617 -1.9733 13 1 4.1877 8.7887 -4.3581 14 1 2.1176 9.5822 -3.3754 15 6 1.9954 -0.7660 1.1375 16 6 1.6314 -2.2426 0.9703 17 6 2.1791 -3.0403 2.1554 18 7 1.8302 -4.4582 1.9945 19 6 2.5166 -5.0409 0.8338 20 6 2.1282 -5.2157 3.2173 21 6 1.5377 -6.5980 3.1083 22 6 2.1563 -7.6800 2.6023 23 6 1.2427 -8.7549 2.6952 24 6 0.1207 -8.2657 3.2529 25 8 0.3067 -6.9597 3.5053 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 1.5611 1.9274 0.8310 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5016 -2.1491 32 1 0.5471 2.0845 -1.4265 33 1 1.7445 4.0417 -0.4870 34 1 3.2635 3.4594 -1.2095 35 1 1.6968 7.2904 -5.4028 36 1 1.5610 -0.3872 2.0627 37 1 3.0796 -0.6611 1.1756 38 1 2.0657 -2.6213 0.0451 39 1 0.5471 -2.3475 0.9323 40 1 1.7445 -2.6615 3.0804 41 1 3.2635 -2.9355 2.1939 42 1 2.1869 -6.0707 0.6961 43 1 2.2787 -4.4608 -0.0579 44 1 3.5934 -5.0235 1.0020 45 1 3.2082 -5.2909 3.3440 46 1 1.6963 -4.7029 4.0768 47 1 3.1589 -7.7201 2.2028 48 1 1.4130 -9.7735 2.3789 49 1 -0.7764 -8.8284 3.4653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285474470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:36 Heat of formation + Delta-G solvation = 12.283945 kcal Electronic energy + Delta-G solvation = -23986.870812 eV Core-core repulsion = 20462.731715 eV Total energy + Delta-G solvation = -3524.139097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.90802 -38.67082 -37.59813 -33.86378 -33.24905 -32.41466 -31.85025 -30.16955 -27.67790 -27.15011 -26.40843 -25.51289 -24.01202 -22.10330 -21.97107 -20.83765 -20.66851 -20.50724 -17.69800 -17.45078 -16.76780 -16.21538 -15.92910 -15.55563 -15.41304 -15.19844 -14.79037 -14.59628 -14.40151 -13.98873 -13.74877 -13.65009 -13.20814 -13.06590 -13.00608 -12.83390 -12.40802 -12.24385 -12.08455 -12.00103 -11.85219 -11.66966 -11.45338 -11.28315 -11.18355 -11.06362 -10.79134 -10.66124 -10.57123 -10.26802 -10.22426 -9.49408 -9.04694 -9.00204 -8.70620 -8.31581 -8.26188 -6.49923 -6.20862 -3.90667 1.33387 2.22078 2.62010 3.21994 3.23259 3.30993 3.46969 3.61206 4.01059 4.24728 4.27942 4.56450 4.63955 4.66302 4.77378 4.79736 4.91531 5.04253 5.09467 5.14191 5.15281 5.23512 5.25565 5.34322 5.38807 5.41947 5.43471 5.50460 5.53027 5.59397 5.65086 5.70032 5.71765 5.79390 5.86083 5.95398 6.00488 6.08875 6.11649 6.13190 6.39491 6.53031 6.57572 6.63429 6.79306 6.80433 7.09149 7.12472 7.62744 8.38889 9.25520 10.87416 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.046814 B = 0.001375 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.968016 B =20355.875135 C =20449.356048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.060 3.940 4 C -0.094 4.094 5 C -0.112 4.112 6 S -0.133 6.133 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.057 3.943 16 C -0.113 4.113 17 C 0.057 3.943 18 N -0.539 5.539 19 C 0.015 3.985 20 C 0.131 3.869 21 C 0.002 3.998 22 C -0.208 4.208 23 C -0.215 4.215 24 C -0.040 4.040 25 O -0.169 6.169 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.266 0.734 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.028 0.972 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -29.124 17.660 34.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.133 4.133 5 C -0.262 4.262 6 S 0.095 5.905 7 C -0.664 4.664 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.070 4.070 18 N -0.263 5.263 19 C -0.132 4.132 20 C 0.003 3.997 21 C -0.049 4.049 22 C -0.228 4.228 23 C -0.234 4.234 24 C -0.108 4.108 25 O -0.064 6.064 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.163 0.837 48 H 0.165 0.835 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.333 -29.477 16.205 33.664 hybrid contribution 1.827 1.694 1.949 3.163 sum 0.494 -27.783 18.154 33.192 Atomic orbital electron populations 1.22497 0.87468 1.02073 1.00921 1.61955 1.08073 1.14198 1.42278 1.22195 0.99812 0.87106 0.97776 1.21285 1.01301 0.93986 0.96682 1.23236 1.02253 0.97586 1.03098 1.84636 1.74449 1.13255 1.18128 1.22741 1.40471 0.97503 1.05673 0.90957 1.25010 0.95242 0.99004 0.94532 1.70029 1.40152 1.34242 1.06109 0.86124 0.78887 0.82201 0.78375 1.19631 1.20572 1.20585 1.22052 1.00049 0.93372 0.91750 1.21594 1.02172 0.93377 0.97935 1.22117 0.98525 0.86687 0.99721 1.61903 1.59041 1.02291 1.03064 1.22560 0.95860 1.01056 0.93765 1.20465 0.97756 0.87277 0.94165 1.22195 0.83745 0.96565 1.02380 1.21603 1.01785 0.92507 1.06925 1.21821 0.94421 1.00717 1.06479 1.24057 1.01061 0.81778 1.03944 1.84042 1.31801 1.25939 1.64667 0.95869 0.90636 0.91377 0.95036 0.90991 0.90795 0.91620 0.92404 0.92186 0.92381 0.95038 0.91006 0.90813 0.90888 0.90645 0.94378 0.91036 0.90395 0.95385 0.91489 0.88948 0.83727 0.83524 0.78161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.13 60.06 0.55 0.76 16 2 N -0.54 -6.65 4.76 -242.91 -1.16 -7.81 16 3 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 4 C -0.09 -1.57 5.15 -26.73 -0.14 -1.71 16 5 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 6 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 7 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 10 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 11 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.06 0.55 4.96 -3.83 -0.02 0.54 16 16 C -0.11 -0.98 5.07 -26.73 -0.14 -1.11 16 17 C 0.06 0.42 4.96 -3.83 -0.02 0.40 16 18 N -0.54 -4.27 4.75 -244.37 -1.16 -5.43 16 19 C 0.02 0.11 9.07 60.07 0.55 0.66 16 20 C 0.13 0.90 5.50 -4.98 -0.03 0.88 16 21 C 0.00 0.02 6.22 -35.62 -0.22 -0.20 16 22 C -0.21 -1.58 9.40 -39.70 -0.37 -1.95 16 23 C -0.22 -1.50 10.91 -39.71 -0.43 -1.93 16 24 C -0.04 -0.28 12.09 29.41 0.36 0.08 16 25 O -0.17 -1.57 10.65 5.68 0.06 -1.51 16 26 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.94 6.30 -51.92 -0.33 0.61 16 28 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 29 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.96 7.93 -51.93 -0.41 0.54 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 33 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 34 H 0.06 1.22 8.14 -51.91 -0.42 0.79 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 38 H 0.07 0.69 6.47 -51.93 -0.34 0.36 16 39 H 0.07 0.69 6.55 -51.92 -0.34 0.35 16 40 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 41 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 42 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 43 H 0.08 0.60 6.30 -51.93 -0.33 0.27 16 44 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.09 0.58 7.93 -51.93 -0.41 0.17 16 47 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.20 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -32.63 403.86 -10.89 -43.52 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.59 Total: -2.59 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 0.47 Total: -17.62 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -1.58 Total: -38.72 kcal Atomic # 8 Polarization: -1.57 SS G_CDS: 0.06 Total: -1.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.63 -10.89 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285474470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.804 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds