Wall clock time and date at job start Tue Mar 31 2020 14:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.53001 * 109.47170 * 293.95417 * 3 2 1 5 5 C 1.53000 * 109.46967 * 179.97438 * 4 3 2 6 6 S 1.81001 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.76203 * 99.99869 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00033 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99816 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00366 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99698 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47390 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47012 * 120.00437 * 11 9 7 14 14 H 1.48505 * 109.47029 * 240.00332 * 11 9 7 15 15 C 1.46894 * 110.99956 * 123.95546 * 2 1 3 16 16 C 1.52999 * 109.47355 * 66.04517 * 15 2 1 17 17 C 1.52995 * 109.47409 * 180.02562 * 16 15 2 18 18 N 1.46901 * 109.47356 * 180.02562 * 17 16 15 19 19 C 1.46902 * 111.00040 * 66.04114 * 18 17 16 20 20 C 1.46899 * 111.00103 * 189.99936 * 18 17 16 21 21 C 1.50703 * 109.47107 * 169.99758 * 20 18 17 22 22 C 1.34515 * 125.79060 * 89.99940 * 21 20 18 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69278 * 21 20 18 26 26 H 1.09002 * 109.47571 * 296.04485 * 1 2 3 27 27 H 1.09008 * 109.47117 * 56.04371 * 1 2 3 28 28 H 1.09003 * 109.47554 * 176.04374 * 1 2 3 29 29 H 1.09004 * 109.47075 * 53.95650 * 3 2 1 30 30 H 1.09002 * 109.46915 * 173.95479 * 3 2 1 31 31 H 1.08995 * 109.47185 * 299.99940 * 4 3 2 32 32 H 1.09002 * 109.47151 * 60.00207 * 4 3 2 33 33 H 1.09004 * 109.47224 * 300.00200 * 5 4 3 34 34 H 1.09002 * 109.46969 * 60.00153 * 5 4 3 35 35 H 0.96995 * 120.00501 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46896 * 306.04663 * 15 2 1 37 37 H 1.08997 * 109.47330 * 186.04507 * 15 2 1 38 38 H 1.08998 * 109.47156 * 59.99710 * 16 15 2 39 39 H 1.09008 * 109.47233 * 300.00000 * 16 15 2 40 40 H 1.08998 * 109.47352 * 59.99642 * 17 16 15 41 41 H 1.09007 * 109.47234 * 299.99857 * 17 16 15 42 42 H 1.09005 * 109.46528 * 183.95480 * 19 18 17 43 43 H 1.09000 * 109.46785 * 303.95569 * 19 18 17 44 44 H 1.08997 * 109.47044 * 63.96124 * 19 18 17 45 45 H 1.09002 * 109.47043 * 289.99738 * 20 18 17 46 46 H 1.09001 * 109.47354 * 49.99799 * 20 18 17 47 47 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 48 48 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 49 49 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1792 3.4861 -1.3179 6 16 1.7492 4.2974 -2.8778 7 6 2.4806 5.8783 -2.6121 8 1 2.9991 6.0849 -1.6875 9 6 2.3911 6.8577 -3.5915 10 7 1.7596 6.6058 -4.7185 11 14 3.1671 8.5335 -3.3100 12 1 3.8131 8.5617 -1.9733 13 1 4.1877 8.7887 -4.3581 14 1 2.1176 9.5822 -3.3754 15 6 1.9954 -0.7660 1.1375 16 6 1.6314 -2.2426 0.9703 17 6 2.1791 -3.0403 2.1554 18 7 1.8302 -4.4582 1.9945 19 6 2.5166 -5.0409 0.8338 20 6 2.1282 -5.2157 3.2173 21 6 1.5377 -6.5980 3.1083 22 6 2.1563 -7.6800 2.6023 23 6 1.2427 -8.7549 2.6952 24 6 0.1207 -8.2657 3.2529 25 8 0.3067 -6.9597 3.5053 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 1.5611 1.9274 0.8310 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5016 -2.1491 32 1 0.5471 2.0845 -1.4265 33 1 1.7445 4.0417 -0.4870 34 1 3.2635 3.4594 -1.2095 35 1 1.6968 7.2904 -5.4028 36 1 1.5610 -0.3872 2.0627 37 1 3.0796 -0.6611 1.1756 38 1 2.0657 -2.6213 0.0451 39 1 0.5471 -2.3475 0.9323 40 1 1.7445 -2.6615 3.0804 41 1 3.2635 -2.9355 2.1939 42 1 2.1869 -6.0707 0.6961 43 1 2.2787 -4.4608 -0.0579 44 1 3.5934 -5.0235 1.0020 45 1 3.2082 -5.2909 3.3440 46 1 1.6963 -4.7029 4.0768 47 1 3.1589 -7.7201 2.2028 48 1 1.4130 -9.7735 2.3789 49 1 -0.7764 -8.8284 3.4653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285474470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:36 Heat of formation + Delta-G solvation = -7.999761 kcal Electronic energy + Delta-G solvation = -23987.750380 eV Core-core repulsion = 20462.731715 eV Total energy + Delta-G solvation = -3525.018664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.45224 -39.42875 -38.40334 -34.90964 -34.58745 -33.89023 -32.72464 -30.83489 -28.25384 -28.21771 -27.79552 -27.10526 -24.96011 -22.89692 -22.62681 -21.70939 -21.51305 -21.22531 -19.55491 -18.21155 -17.37001 -16.97630 -16.89693 -16.84979 -16.49803 -16.23475 -15.89056 -15.86914 -15.39855 -15.17315 -14.76197 -14.48647 -14.42183 -13.73711 -13.67263 -13.57462 -13.49256 -13.34201 -13.13394 -13.03552 -12.93203 -12.82855 -12.60085 -12.56547 -12.42990 -12.34989 -12.12912 -12.02125 -11.60384 -11.42879 -11.25307 -11.14735 -10.81467 -10.30725 -9.53880 -9.26727 -9.24270 -8.66380 -8.37159 -6.13510 0.79247 1.31702 1.38473 1.49653 1.70154 1.75190 2.13860 2.28491 2.82831 2.97095 3.15421 3.34040 3.79744 3.94619 4.00125 4.07203 4.14084 4.17720 4.22185 4.23841 4.31173 4.37700 4.47326 4.48120 4.49229 4.61290 4.62253 4.63607 4.67434 4.75812 4.79453 4.82326 4.86339 4.94929 5.02285 5.05258 5.07903 5.20993 5.22886 5.24909 5.29790 5.39811 5.40370 5.62363 5.97927 6.01353 6.10712 6.18568 6.20022 6.26855 7.05078 8.72600 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.046814 B = 0.001375 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.968016 B =20355.875135 C =20449.356048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.552 5.552 3 C 0.071 3.929 4 C -0.082 4.082 5 C -0.087 4.087 6 S -0.200 6.200 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.015 3.985 10 N -0.908 5.908 11 Si 0.995 3.005 12 H -0.262 1.262 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.059 3.941 16 C -0.103 4.103 17 C 0.063 3.937 18 N -0.553 5.553 19 C 0.019 3.981 20 C 0.132 3.868 21 C -0.017 4.017 22 C -0.215 4.215 23 C -0.229 4.229 24 C -0.046 4.046 25 O -0.192 6.192 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.156 0.844 48 H 0.164 0.836 49 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -29.539 19.285 35.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.276 5.276 3 C -0.059 4.059 4 C -0.121 4.121 5 C -0.237 4.237 6 S 0.029 5.971 7 C -0.686 4.686 8 H 0.091 0.909 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.069 4.069 16 C -0.141 4.141 17 C -0.065 4.065 18 N -0.277 5.277 19 C -0.128 4.128 20 C 0.005 3.995 21 C -0.068 4.068 22 C -0.234 4.234 23 C -0.248 4.248 24 C -0.113 4.113 25 O -0.088 6.088 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.173 0.827 48 H 0.182 0.818 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.502 -29.912 17.836 34.830 hybrid contribution 1.532 1.687 1.464 2.709 sum 1.030 -28.224 19.301 34.208 Atomic orbital electron populations 1.22484 0.87148 1.02632 1.00552 1.61916 1.08494 1.13340 1.43883 1.21997 1.00388 0.87861 0.95623 1.21167 1.00772 0.91769 0.98421 1.23158 1.02531 0.98890 0.99074 1.84666 1.75145 1.13961 1.23343 1.23081 1.40933 0.98555 1.06025 0.90922 1.26072 0.95493 1.03386 0.94004 1.70161 1.41295 1.35860 1.07111 0.84961 0.78088 0.76533 0.78749 1.18618 1.19647 1.19658 1.22087 1.00364 0.93480 0.90990 1.21475 1.01508 0.92860 0.98269 1.22050 0.98970 0.86242 0.99229 1.61862 1.59600 1.02663 1.03599 1.22496 0.96328 1.00538 0.93478 1.20516 0.98523 0.86684 0.93766 1.22500 0.83773 0.97373 1.03127 1.21864 1.02391 0.92639 1.06555 1.22153 0.94428 1.01528 1.06643 1.24738 1.02184 0.81163 1.03221 1.84028 1.32396 1.27119 1.65259 0.95358 0.91982 0.90259 0.94570 0.90161 0.91724 0.91980 0.92080 0.91815 0.91962 0.94334 0.90350 0.91656 0.91802 0.89926 0.93532 0.91621 0.91024 0.94503 0.90094 0.88525 0.82678 0.81791 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.60 16 2 N -0.55 -12.74 4.76 -922.44 -4.39 -17.13 16 3 C 0.07 1.83 4.96 86.30 0.43 2.26 16 4 C -0.08 -2.72 5.15 30.59 0.16 -2.56 16 5 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 6 S -0.20 -10.83 21.44 -56.49 -1.21 -12.04 16 7 C -0.54 -31.49 9.50 67.95 0.65 -30.84 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 C 0.02 0.88 5.49 84.86 0.47 1.34 16 10 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 11 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.06 1.04 4.96 86.30 0.43 1.47 16 16 C -0.10 -1.63 5.07 30.59 0.16 -1.48 16 17 C 0.06 0.81 4.96 86.30 0.43 1.23 16 18 N -0.55 -8.11 4.75 -927.03 -4.41 -12.51 16 19 C 0.02 0.27 9.07 127.69 1.16 1.43 16 20 C 0.13 1.67 5.50 85.56 0.47 2.15 16 21 C -0.02 -0.28 6.22 24.83 0.15 -0.12 16 22 C -0.21 -3.07 9.40 22.19 0.21 -2.86 16 23 C -0.23 -2.94 10.91 22.19 0.24 -2.69 16 24 C -0.05 -0.58 12.09 66.97 0.81 0.23 16 25 O -0.19 -3.45 10.65 -2.58 -0.03 -3.48 16 26 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 1.51 6.30 -2.38 -0.02 1.50 16 28 H 0.08 1.54 6.47 -2.39 -0.02 1.53 16 29 H 0.04 0.91 8.12 -2.38 -0.02 0.89 16 30 H 0.08 1.95 7.93 -2.39 -0.02 1.93 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.10 6.47 -2.39 -0.02 2.08 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 37 H 0.08 1.30 7.93 -2.39 -0.02 1.28 16 38 H 0.06 1.16 6.47 -2.39 -0.02 1.14 16 39 H 0.06 1.14 6.55 -2.38 -0.02 1.12 16 40 H 0.08 0.95 7.93 -2.39 -0.02 0.93 16 41 H 0.05 0.53 8.12 -2.38 -0.02 0.51 16 42 H 0.07 0.98 6.31 -2.38 -0.02 0.96 16 43 H 0.07 1.06 6.30 -2.39 -0.02 1.05 16 44 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 46 H 0.10 1.10 7.93 -2.39 -0.02 1.08 16 47 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 48 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 49 H 0.23 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -70.43 403.86 0.50 -69.93 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.90 Total: 16.05 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 7.33 Total: -32.00 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -8.51 Total: -84.70 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.03 Total: -3.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.21 Total: -12.04 kcal Total: -70.43 0.50 -69.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285474470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.929 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds