Wall clock time and date at job start Tue Mar 31 2020 14:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35891 * 117.00143 * 2 1 4 4 C 1.38733 * 120.05491 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94152 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.06077 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94606 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47632 * 340.00041 * 7 6 5 9 9 C 1.53005 * 109.46915 * 100.00467 * 7 6 5 10 10 C 1.50704 * 109.46964 * 295.02367 * 9 7 6 11 11 C 1.38656 * 120.78707 * 95.81233 * 10 9 7 12 12 C 1.38200 * 119.15822 * 179.97438 * 11 10 9 13 13 N 1.31870 * 120.76707 * 0.26139 * 12 11 10 14 14 C 1.31873 * 121.72310 * 359.47406 * 13 12 11 15 15 C 1.38197 * 120.76539 * 0.52057 * 14 13 12 16 16 N 1.46900 * 109.47140 * 219.99695 * 7 6 5 17 17 C 1.46900 * 110.99705 * 154.35581 * 16 7 6 18 18 C 1.53004 * 109.47064 * 174.93358 * 17 16 7 19 19 C 1.50698 * 109.47514 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99433 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00473 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99786 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46961 * 59.99749 * 23 21 19 25 25 H 1.48500 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47231 * 299.99928 * 23 21 19 27 27 C 1.38269 * 120.10701 * 0.26979 * 6 5 4 28 28 C 1.38145 * 120.05652 * 359.45228 * 27 6 5 29 29 H 1.09004 * 109.47146 * 60.00187 * 1 2 3 30 30 H 1.09006 * 109.47502 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47258 * 300.00038 * 1 2 3 32 32 H 1.08000 * 120.03247 * 359.95917 * 4 3 2 33 33 H 1.08009 * 119.96800 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47342 * 175.02565 * 9 7 6 35 35 H 1.09005 * 109.47438 * 55.02270 * 9 7 6 36 36 H 1.07998 * 120.41705 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.61611 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.61529 * 180.26868 * 14 13 12 39 39 H 1.07998 * 120.42102 * 179.76380 * 15 14 13 40 40 H 1.00903 * 111.00058 * 30.40828 * 16 7 6 41 41 H 1.08998 * 109.47465 * 294.92753 * 17 16 7 42 42 H 1.09000 * 109.47486 * 54.93588 * 17 16 7 43 43 H 1.09007 * 109.47067 * 299.99925 * 18 17 16 44 44 H 1.09001 * 109.47500 * 59.99614 * 18 17 16 45 45 H 0.97001 * 120.00551 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96748 * 179.70594 * 27 6 5 47 47 H 1.07998 * 120.03121 * 180.27314 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 1 5.0114 4.9038 0.3513 9 6 3.9950 5.5863 -1.4213 10 6 4.8395 4.7078 -2.3081 11 6 4.2592 3.7168 -3.0850 12 6 5.0655 2.9310 -3.8865 13 7 6.3715 3.1120 -3.9134 14 6 6.9568 4.0478 -3.1918 15 6 6.2150 4.8718 -2.3668 16 7 3.2628 5.9366 0.8892 17 6 4.1540 6.9877 1.3981 18 6 3.3414 7.9934 2.2161 19 6 4.2554 9.0721 2.7377 20 1 5.3106 9.0429 2.5090 21 6 3.7449 10.0955 3.5077 22 7 2.4602 10.1307 3.7866 23 14 4.8781 11.4321 4.1548 24 1 5.5235 12.1294 3.0134 25 1 4.0893 12.4083 4.9486 26 1 5.9223 10.8216 5.0162 27 6 1.9211 3.6047 0.0051 28 6 1.2915 2.3751 -0.0002 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.0209 0.3798 0.0016 33 1 5.1346 2.5748 0.0000 34 1 4.4098 6.5941 -1.4072 35 1 2.9757 5.6182 -1.8062 36 1 3.1907 3.5615 -3.0647 37 1 4.6214 2.1566 -4.4944 38 1 8.0287 4.1691 -3.2432 39 1 6.7005 5.6339 -1.7754 40 1 2.8250 5.4353 1.6476 41 1 4.9202 6.5396 2.0308 42 1 4.6280 7.4993 0.5604 43 1 2.5751 8.4416 1.5834 44 1 2.8673 7.4819 3.0538 45 1 2.1009 10.8509 4.3280 46 1 1.3343 4.5114 0.0095 47 1 0.2129 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286356722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:33 Heat of formation + Delta-G solvation = 13.110221 kcal Electronic energy + Delta-G solvation = -26949.652879 eV Core-core repulsion = 23290.105661 eV Total energy + Delta-G solvation = -3659.547218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56189 -40.00578 -38.29755 -36.13518 -34.07048 -32.81875 -31.26144 -31.20134 -30.96289 -29.07531 -27.84770 -27.32267 -24.54448 -23.50149 -23.30852 -22.55030 -21.99264 -20.50308 -20.12572 -18.27398 -16.86230 -16.55521 -16.35639 -16.16898 -15.91560 -15.77543 -15.46944 -14.82036 -14.51247 -14.39722 -14.32350 -13.92608 -13.74430 -13.63600 -13.46169 -13.01188 -12.77612 -12.60990 -12.38812 -12.21751 -12.11314 -11.88938 -11.55747 -11.17430 -11.08979 -11.01208 -10.87901 -10.78504 -10.56366 -9.99626 -9.58878 -9.53488 -9.39135 -9.20978 -9.18709 -9.02773 -8.37568 -8.16639 -7.93508 -6.02105 -4.04882 1.09467 1.21102 1.29385 1.36527 3.10536 3.31536 3.36240 3.38245 3.68306 3.77411 4.34986 4.40231 4.49314 4.64120 4.70599 4.77802 4.81576 4.91261 4.93335 5.03142 5.08685 5.12163 5.21400 5.33188 5.33982 5.35687 5.40180 5.46734 5.57580 5.65904 5.69655 5.84028 5.97243 6.00767 6.10506 6.20928 6.23303 6.32066 6.35163 6.43174 6.62090 6.67164 6.68474 6.94248 7.25552 7.41257 7.68797 7.75235 7.89956 7.91759 8.04905 8.40226 9.02209 9.59055 11.09201 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.003194 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.777603 B = 8765.252110 C =11028.644085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.153 4.153 5 C -0.068 4.068 6 C -0.118 4.118 7 C 0.138 3.862 8 H 0.049 0.951 9 C -0.070 4.070 10 C -0.026 4.026 11 C -0.160 4.160 12 C 0.095 3.905 13 N -0.493 5.493 14 C 0.095 3.905 15 C -0.171 4.171 16 N -0.684 5.684 17 C 0.065 3.935 18 C 0.028 3.972 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.059 4.059 28 C -0.209 4.209 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.341 0.659 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.261 0.739 46 H 0.137 0.863 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -18.964 -12.339 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.171 4.171 5 C -0.087 4.087 6 C -0.119 4.119 7 C 0.028 3.972 8 H 0.067 0.933 9 C -0.108 4.108 10 C -0.034 4.034 11 C -0.180 4.180 12 C -0.061 4.061 13 N -0.203 5.203 14 C -0.062 4.062 15 C -0.191 4.191 16 N -0.315 5.315 17 C -0.063 4.063 18 C -0.010 4.010 19 C -0.562 4.562 20 H 0.071 0.929 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.077 4.077 28 C -0.227 4.227 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.353 -19.186 -13.275 23.333 hybrid contribution 0.304 0.958 1.649 1.931 sum -0.049 -18.228 -11.626 21.620 Atomic orbital electron populations 1.23033 0.78503 1.03718 1.01470 1.86045 1.21304 1.27227 1.88901 1.19026 0.92294 0.84068 0.96932 1.20308 0.91325 0.98361 1.07145 1.20792 0.99474 0.91094 0.97344 1.19874 0.93849 0.94551 1.03606 1.20261 0.95590 0.88072 0.93265 0.93341 1.20687 0.99687 0.97803 0.92659 1.20374 0.94035 0.94583 0.94448 1.22028 1.01403 0.96648 0.97886 1.22672 0.89285 0.97728 0.96438 1.67651 1.12159 1.19039 1.21405 1.22701 1.00275 0.90962 0.92220 1.22112 0.94335 1.01671 1.01012 1.60637 1.33373 1.14209 1.23304 1.22231 0.94210 0.92217 0.97605 1.19032 0.95350 0.92378 0.94196 1.21135 0.94507 1.08526 1.32038 0.92854 1.24988 0.95008 0.98021 0.96251 1.69954 1.11904 1.32890 1.38452 0.86664 0.80703 0.81660 0.78998 1.20219 1.21266 1.20285 1.20934 0.94046 0.97334 0.95422 1.21250 0.99945 0.92314 1.09234 0.92677 0.88451 0.92578 0.85642 0.86109 0.89687 0.89922 0.85241 0.83274 0.83074 0.84834 0.84008 0.96511 0.92268 0.95649 0.96828 0.92922 0.84514 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.40 -0.20 -3.69 16 3 C 0.12 1.41 6.69 -39.22 -0.26 1.15 16 4 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 5 C -0.07 -0.81 9.00 -39.61 -0.36 -1.16 16 6 C -0.12 -1.45 3.89 -104.60 -0.41 -1.85 16 7 C 0.14 1.85 2.28 -68.86 -0.16 1.69 16 8 H 0.05 0.68 7.71 -51.93 -0.40 0.28 16 9 C -0.07 -0.88 5.11 -27.88 -0.14 -1.02 16 10 C -0.03 -0.29 4.53 -104.31 -0.47 -0.77 16 11 C -0.16 -1.73 8.97 -39.44 -0.35 -2.08 16 12 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 13 N -0.49 -5.99 10.36 -13.25 -0.14 -6.13 16 14 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 15 C -0.17 -1.88 9.84 -39.44 -0.39 -2.27 16 16 N -0.68 -11.10 5.66 -107.95 -0.61 -11.71 16 17 C 0.07 1.29 5.39 -3.82 -0.02 1.27 16 18 C 0.03 0.70 5.28 -27.88 -0.15 0.56 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 20 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.06 -0.70 8.98 -39.60 -0.36 -1.06 16 28 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.36 8.04 -52.48 -0.42 0.94 16 34 H 0.08 1.14 7.34 -51.93 -0.38 0.76 16 35 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.34 5.55 8.01 -39.29 -0.31 5.24 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 1.15 7.32 -51.93 -0.38 0.77 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.14 1.65 7.70 -52.49 -0.40 1.25 16 47 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -31.22 391.10 -10.16 -41.38 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.19 Total: 4.47 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.63 Total: -20.77 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.01 Total: -43.67 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.20 Total: -3.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.22 -10.16 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286356722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.492 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds