Wall clock time and date at job start Tue Mar 31 2020 14:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35891 * 117.00143 * 2 1 4 4 C 1.38733 * 120.05491 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94152 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.06077 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94606 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47632 * 340.00041 * 7 6 5 9 9 C 1.53005 * 109.46915 * 100.00467 * 7 6 5 10 10 C 1.50704 * 109.46964 * 295.02367 * 9 7 6 11 11 C 1.38656 * 120.78707 * 95.81233 * 10 9 7 12 12 C 1.38200 * 119.15822 * 179.97438 * 11 10 9 13 13 N 1.31870 * 120.76707 * 0.26139 * 12 11 10 14 14 C 1.31873 * 121.72310 * 359.47406 * 13 12 11 15 15 C 1.38197 * 120.76539 * 0.52057 * 14 13 12 16 16 N 1.46900 * 109.47140 * 219.99695 * 7 6 5 17 17 C 1.46900 * 110.99705 * 154.35581 * 16 7 6 18 18 C 1.53004 * 109.47064 * 174.93358 * 17 16 7 19 19 C 1.50698 * 109.47514 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99433 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00473 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99786 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46961 * 59.99749 * 23 21 19 25 25 H 1.48500 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47231 * 299.99928 * 23 21 19 27 27 C 1.38269 * 120.10701 * 0.26979 * 6 5 4 28 28 C 1.38145 * 120.05652 * 359.45228 * 27 6 5 29 29 H 1.09004 * 109.47146 * 60.00187 * 1 2 3 30 30 H 1.09006 * 109.47502 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47258 * 300.00038 * 1 2 3 32 32 H 1.08000 * 120.03247 * 359.95917 * 4 3 2 33 33 H 1.08009 * 119.96800 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47342 * 175.02565 * 9 7 6 35 35 H 1.09005 * 109.47438 * 55.02270 * 9 7 6 36 36 H 1.07998 * 120.41705 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.61611 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.61529 * 180.26868 * 14 13 12 39 39 H 1.07998 * 120.42102 * 179.76380 * 15 14 13 40 40 H 1.00903 * 111.00058 * 30.40828 * 16 7 6 41 41 H 1.08998 * 109.47465 * 294.92753 * 17 16 7 42 42 H 1.09000 * 109.47486 * 54.93588 * 17 16 7 43 43 H 1.09007 * 109.47067 * 299.99925 * 18 17 16 44 44 H 1.09001 * 109.47500 * 59.99614 * 18 17 16 45 45 H 0.97001 * 120.00551 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96748 * 179.70594 * 27 6 5 47 47 H 1.07998 * 120.03121 * 180.27314 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 1 5.0114 4.9038 0.3513 9 6 3.9950 5.5863 -1.4213 10 6 4.8395 4.7078 -2.3081 11 6 4.2592 3.7168 -3.0850 12 6 5.0655 2.9310 -3.8865 13 7 6.3715 3.1120 -3.9134 14 6 6.9568 4.0478 -3.1918 15 6 6.2150 4.8718 -2.3668 16 7 3.2628 5.9366 0.8892 17 6 4.1540 6.9877 1.3981 18 6 3.3414 7.9934 2.2161 19 6 4.2554 9.0721 2.7377 20 1 5.3106 9.0429 2.5090 21 6 3.7449 10.0955 3.5077 22 7 2.4602 10.1307 3.7866 23 14 4.8781 11.4321 4.1548 24 1 5.5235 12.1294 3.0134 25 1 4.0893 12.4083 4.9486 26 1 5.9223 10.8216 5.0162 27 6 1.9211 3.6047 0.0051 28 6 1.2915 2.3751 -0.0002 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.0209 0.3798 0.0016 33 1 5.1346 2.5748 0.0000 34 1 4.4098 6.5941 -1.4072 35 1 2.9757 5.6182 -1.8062 36 1 3.1907 3.5615 -3.0647 37 1 4.6214 2.1566 -4.4944 38 1 8.0287 4.1691 -3.2432 39 1 6.7005 5.6339 -1.7754 40 1 2.8250 5.4353 1.6476 41 1 4.9202 6.5396 2.0308 42 1 4.6280 7.4993 0.5604 43 1 2.5751 8.4416 1.5834 44 1 2.8673 7.4819 3.0538 45 1 2.1009 10.8509 4.3280 46 1 1.3343 4.5114 0.0095 47 1 0.2129 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286356722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:32 Heat of formation + Delta-G solvation = -4.337051 kcal Electronic energy + Delta-G solvation = -26950.409449 eV Core-core repulsion = 23290.105661 eV Total energy + Delta-G solvation = -3660.303789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45057 -40.83603 -39.25087 -37.30717 -35.56000 -34.42710 -32.46217 -32.05690 -31.95921 -30.35690 -29.09481 -28.03153 -26.23942 -24.48113 -24.30631 -23.55440 -22.96806 -22.16459 -21.14592 -19.09172 -18.48310 -17.78242 -17.47677 -17.03960 -16.82137 -16.62302 -16.46490 -16.29783 -15.88001 -15.59176 -15.36761 -14.99259 -14.60553 -14.53842 -14.44651 -14.25977 -14.15310 -13.96355 -13.45329 -13.34998 -13.11996 -12.96135 -12.81866 -12.78075 -12.50353 -12.39969 -12.11788 -11.87486 -11.75679 -11.61917 -11.38158 -11.22691 -10.54174 -10.45456 -10.38173 -10.04253 -9.91325 -9.31290 -9.05999 -8.18667 -6.29616 0.26825 0.33291 0.40234 0.45143 1.41277 1.43860 1.51675 2.39263 2.41339 2.77477 2.90678 3.15079 3.25042 3.63223 3.66913 3.89309 3.92457 3.96613 4.00277 4.23837 4.27805 4.29630 4.35140 4.39427 4.41067 4.45246 4.53869 4.57834 4.66190 4.72591 4.74253 4.77811 4.80959 4.96998 5.04819 5.09905 5.12574 5.20178 5.29586 5.40981 5.46302 5.52928 5.64520 5.71423 5.79914 5.82279 5.85196 6.15758 6.28911 6.45968 6.51562 6.88040 7.08357 7.39540 8.93092 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.003194 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.777603 B = 8765.252110 C =11028.644085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.160 4.160 5 C -0.069 4.069 6 C -0.123 4.123 7 C 0.145 3.855 8 H 0.046 0.954 9 C -0.063 4.063 10 C -0.032 4.032 11 C -0.159 4.159 12 C 0.091 3.909 13 N -0.513 5.513 14 C 0.091 3.909 15 C -0.177 4.177 16 N -0.684 5.684 17 C 0.085 3.915 18 C 0.035 3.965 19 C -0.544 4.544 20 H 0.060 0.940 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.963 3.037 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.267 1.267 27 C -0.065 4.065 28 C -0.207 4.207 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.341 0.659 41 H 0.017 0.983 42 H 0.063 0.937 43 H -0.004 1.004 44 H -0.011 1.011 45 H 0.263 0.737 46 H 0.132 0.868 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 -19.828 -12.916 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.074 3.926 4 C -0.178 4.178 5 C -0.087 4.087 6 C -0.124 4.124 7 C 0.035 3.965 8 H 0.064 0.936 9 C -0.101 4.101 10 C -0.041 4.041 11 C -0.179 4.179 12 C -0.065 4.065 13 N -0.222 5.222 14 C -0.066 4.066 15 C -0.197 4.197 16 N -0.315 5.315 17 C -0.044 4.044 18 C -0.002 4.002 19 C -0.583 4.583 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.571 5.571 23 Si 0.787 3.213 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.192 1.192 27 C -0.084 4.084 28 C -0.225 4.225 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.187 0.813 38 H 0.190 0.810 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.015 0.985 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.150 0.850 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.360 -20.070 -13.868 24.397 hybrid contribution 0.001 1.130 1.803 2.128 sum 0.360 -18.940 -12.064 22.459 Atomic orbital electron populations 1.23320 0.76591 1.05477 1.02174 1.86034 1.23327 1.26839 1.88696 1.19148 0.92462 0.84570 0.96466 1.20467 0.91746 0.98564 1.07049 1.20801 0.99621 0.91006 0.97301 1.19721 0.94017 0.93925 1.04746 1.20215 0.95109 0.88204 0.92925 0.93624 1.20564 0.99844 0.97402 0.92308 1.20304 0.94209 0.94836 0.94705 1.22102 1.01814 0.96358 0.97635 1.23022 0.89039 0.98045 0.96442 1.67697 1.12813 1.19679 1.22039 1.23058 1.01363 0.90451 0.91686 1.22247 0.94230 1.01969 1.01217 1.60536 1.33045 1.14561 1.23327 1.21822 0.93552 0.92073 0.96907 1.18874 0.94871 0.93031 0.93469 1.21603 0.95220 1.09325 1.32113 0.92143 1.25931 0.96561 1.00622 0.96497 1.70092 1.13882 1.33874 1.39261 0.85536 0.78650 0.78469 0.78603 1.19134 1.20958 1.19234 1.20939 0.93912 0.97654 0.95854 1.21411 1.00957 0.91698 1.08481 0.91670 0.86316 0.92115 0.84775 0.85799 0.90820 0.90016 0.84519 0.81265 0.80977 0.84073 0.84044 0.96483 0.91852 0.98518 0.99286 0.92810 0.85021 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.70 10.50 -92.33 -0.97 -7.67 16 3 C 0.12 2.58 6.69 22.51 0.15 2.73 16 4 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 5 C -0.07 -1.55 9.00 22.25 0.20 -1.35 16 6 C -0.12 -2.95 3.89 -19.85 -0.08 -3.02 16 7 C 0.15 3.84 2.28 44.17 0.10 3.94 16 8 H 0.05 1.25 7.71 -2.39 -0.02 1.23 16 9 C -0.06 -1.55 5.11 29.85 0.15 -1.40 16 10 C -0.03 -0.70 4.53 -19.66 -0.09 -0.79 16 11 C -0.16 -3.25 8.97 22.36 0.20 -3.05 16 12 C 0.09 1.84 11.18 84.68 0.95 2.78 16 13 N -0.51 -11.72 10.36 -195.84 -2.03 -13.75 16 14 C 0.09 1.85 11.18 84.68 0.95 2.79 16 15 C -0.18 -3.70 9.84 22.36 0.22 -3.48 16 16 N -0.68 -22.43 5.66 -495.45 -2.81 -25.23 16 17 C 0.09 3.40 5.39 86.30 0.47 3.86 16 18 C 0.04 1.82 5.28 29.85 0.16 1.98 16 19 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 21 C 0.00 0.11 5.46 84.66 0.46 0.57 16 22 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 23 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C -0.07 -1.51 8.98 22.25 0.20 -1.31 16 28 C -0.21 -4.26 9.04 22.37 0.20 -4.06 16 29 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 30 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 32 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.12 2.68 8.04 -2.91 -0.02 2.66 16 34 H 0.07 1.96 7.34 -2.39 -0.02 1.95 16 35 H 0.08 2.00 8.07 -2.38 -0.02 1.98 16 36 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.34 11.27 8.01 -89.69 -0.72 10.55 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 2.47 7.32 -2.39 -0.02 2.45 16 43 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.13 3.16 7.70 -2.91 -0.02 3.13 16 47 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -66.78 391.10 2.56 -64.23 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.24 Total: 24.75 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 5.81 Total: -32.06 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -4.55 Total: -95.08 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.97 Total: -7.67 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.78 2.56 -64.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286356722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.889 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds