Wall clock time and date at job start Tue Mar 31 2020 14:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38153 * 120.03083 * 2 1 4 4 C 1.38251 * 120.06140 * 180.02562 * 3 2 1 5 5 C 1.38299 * 120.13238 * 359.97377 * 4 3 2 6 6 C 1.38101 * 120.06563 * 359.78994 * 5 4 3 7 7 C 1.38796 * 120.03222 * 180.02562 * 2 1 3 8 8 N 1.40247 * 120.06670 * 359.95570 * 7 2 1 9 9 C 1.36113 * 125.94462 * 131.98637 * 8 7 2 10 10 C 1.35368 * 106.05221 * 179.97438 * 9 8 7 11 11 C 1.50693 * 126.73277 * 179.97438 * 10 9 8 12 12 N 1.46905 * 109.47105 * 95.00080 * 11 10 9 13 13 C 1.46897 * 110.99966 * 189.99904 * 12 11 10 14 14 C 1.50703 * 109.46963 * 75.23127 * 13 12 11 15 15 H 1.07995 * 120.00215 * 356.66636 * 14 13 12 16 16 C 1.37882 * 119.99872 * 176.66970 * 14 13 12 17 17 N 1.31517 * 119.99962 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00079 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47180 * 89.99199 * 18 16 14 20 20 H 1.48493 * 109.47017 * 209.99501 * 18 16 14 21 21 H 1.48503 * 109.46738 * 329.99470 * 18 16 14 22 22 C 1.46903 * 110.99903 * 66.04652 * 12 11 10 23 23 C 1.52995 * 109.47002 * 195.50488 * 22 12 11 24 24 C 1.52996 * 117.49999 * 245.34475 * 23 22 12 25 25 C 1.53001 * 117.49990 * 176.68564 * 23 22 12 26 26 N 1.33772 * 106.53572 * 0.24136 * 10 9 8 27 27 N 1.28609 * 109.06288 * 359.59802 * 26 10 9 28 28 H 1.09003 * 109.46973 * 264.61730 * 1 2 3 29 29 H 1.08999 * 109.47262 * 24.61365 * 1 2 3 30 30 H 1.08993 * 109.47257 * 144.61420 * 1 2 3 31 31 H 1.08000 * 119.96675 * 0.04402 * 3 2 1 32 32 H 1.08004 * 119.93424 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.96555 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.03542 * 180.22805 * 6 5 4 35 35 H 1.08005 * 126.97480 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.47624 * 335.00092 * 11 10 9 37 37 H 1.09003 * 109.47641 * 215.00151 * 11 10 9 38 38 H 1.09000 * 109.47122 * 195.23240 * 13 12 11 39 39 H 1.09006 * 109.47275 * 315.23266 * 13 12 11 40 40 H 0.97002 * 119.99781 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.46886 * 315.50735 * 22 12 11 42 42 H 1.09003 * 109.46792 * 75.50392 * 22 12 11 43 43 H 1.08999 * 115.55347 * 31.01374 * 23 22 12 44 44 H 1.08999 * 117.50223 * 359.97438 * 24 23 22 45 45 H 1.09002 * 117.50140 * 145.02175 * 24 23 22 46 46 H 1.09002 * 117.49994 * 214.97966 * 25 23 22 47 47 H 1.09000 * 117.49783 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2758 0.0011 -0.0005 6 6 3.5901 -1.1977 0.0044 7 6 2.2017 -1.2016 -0.0005 8 7 1.5025 -2.4174 -0.0001 9 6 1.7427 -3.4775 -0.8195 10 6 0.8417 -4.4276 -0.4762 11 6 0.6945 -5.7948 -1.0925 12 7 1.4455 -6.7744 -0.2961 13 6 1.5237 -8.0673 -0.9891 14 6 2.5247 -7.9756 -2.1119 15 1 3.0104 -7.0353 -2.3269 16 6 2.8203 -9.0922 -2.8648 17 7 2.2292 -10.2374 -2.6027 18 14 4.0616 -8.9788 -4.2562 19 1 5.4193 -9.2769 -3.7338 20 1 3.7112 -9.9610 -5.3133 21 1 4.0409 -7.6082 -4.8274 22 6 0.8565 -6.9285 1.0408 23 6 1.8543 -7.6369 1.9591 24 6 1.4749 -9.0256 2.4771 25 6 1.4563 -7.8236 3.4246 26 7 0.1037 -3.9125 0.5136 27 7 0.5223 -2.7250 0.7755 28 1 -0.3633 -0.0964 1.0232 29 1 -0.3634 0.9343 -0.4280 30 1 -0.3633 -0.8378 -0.5951 31 1 1.6584 2.1313 0.0007 32 1 4.1194 2.1331 -0.0010 33 1 5.3558 0.0048 -0.0005 34 1 4.1332 -2.1311 0.0081 35 1 2.4988 -3.5466 -1.5876 36 1 1.0844 -5.7785 -2.1103 37 1 -0.3592 -6.0733 -1.1116 38 1 1.8368 -8.8384 -0.2853 39 1 0.5446 -8.3218 -1.3951 40 1 2.4375 -11.0231 -3.1322 41 1 0.6209 -5.9459 1.4495 42 1 -0.0558 -7.5208 0.9698 43 1 2.9063 -7.4505 1.7432 44 1 0.5142 -9.4345 2.1641 45 1 2.2773 -9.7527 2.6023 46 1 2.2466 -7.7603 4.1728 47 1 0.4838 -7.4413 3.7346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289468942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:49 Heat of formation + Delta-G solvation = 144.179120 kcal Electronic energy + Delta-G solvation = -27170.875087 eV Core-core repulsion = 23549.304194 eV Total energy + Delta-G solvation = -3621.570893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.46107 -40.47492 -39.29595 -37.10241 -35.60562 -34.58358 -33.86493 -32.53500 -31.04265 -29.51728 -28.36559 -28.06833 -25.86941 -24.99403 -23.55227 -23.18572 -22.83901 -22.49556 -21.43737 -21.03211 -19.11579 -18.48428 -17.73752 -17.06490 -16.81404 -16.52682 -16.32871 -15.96665 -15.74401 -15.52151 -15.27524 -15.09035 -14.79092 -14.42360 -14.22558 -14.04485 -13.68059 -13.49669 -13.37953 -13.19232 -13.13665 -12.75298 -12.52718 -12.48410 -12.41460 -12.36222 -12.27684 -12.27076 -12.03962 -11.80082 -11.51663 -11.37266 -11.10981 -10.70908 -10.52733 -10.27952 -9.92498 -9.69612 -9.05237 -8.12561 -6.22019 -0.23878 0.24776 0.75239 1.30466 1.39834 1.45636 1.46669 1.57297 2.45399 2.57679 2.91758 3.17454 3.24746 3.44706 3.65638 3.67615 3.83451 3.95061 4.04821 4.05045 4.07434 4.20234 4.22810 4.29660 4.39651 4.50860 4.56150 4.57779 4.64361 4.66117 4.72477 4.75009 4.79864 4.86510 4.88218 5.00008 5.06995 5.13336 5.23556 5.24990 5.26698 5.30446 5.38314 5.42102 5.42338 5.63413 5.73298 5.96914 6.12628 6.36674 6.61398 6.92881 7.39912 7.46869 8.98188 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.003390 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.562362 B = 8258.409180 C = 9721.086558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.107 4.107 4 C -0.091 4.091 5 C -0.108 4.108 6 C -0.110 4.110 7 C 0.077 3.923 8 N -0.239 5.239 9 C -0.021 4.021 10 C -0.009 4.009 11 C 0.150 3.850 12 N -0.529 5.529 13 C 0.211 3.789 14 C -0.516 4.516 15 H 0.067 0.933 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.259 1.259 22 C 0.090 3.910 23 C -0.152 4.152 24 C -0.183 4.183 25 C -0.157 4.157 26 N -0.289 5.289 27 N -0.093 5.093 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.133 0.867 35 H 0.214 0.786 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.017 0.983 39 H -0.041 1.041 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.013 0.987 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 24.442 5.776 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.127 4.127 6 C -0.130 4.130 7 C -0.012 4.012 8 N -0.028 5.028 9 C -0.170 4.170 10 C -0.146 4.146 11 C 0.021 3.979 12 N -0.254 5.254 13 C 0.086 3.914 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.183 1.183 22 C -0.038 4.038 23 C -0.171 4.171 24 C -0.220 4.220 25 C -0.194 4.194 26 N -0.156 5.156 27 N -0.071 5.071 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.151 0.849 35 H 0.231 0.769 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.035 0.965 39 H -0.023 1.023 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.031 0.969 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.128 0.872 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.660 24.885 6.918 25.965 hybrid contribution 0.145 -1.637 -1.668 2.341 sum 2.805 23.248 5.250 23.998 Atomic orbital electron populations 1.20772 0.90176 1.02945 1.02821 1.20070 0.97115 0.91653 0.98631 1.21365 0.94964 0.96906 0.99328 1.21797 0.93948 0.99638 0.95537 1.21427 1.01851 0.90659 0.98749 1.21303 0.90702 1.01199 0.99803 1.17866 0.91474 0.81529 1.10303 1.44639 1.23005 1.12072 1.23062 1.23878 1.04616 0.87222 1.01311 1.21870 0.96614 0.98085 0.98005 1.20110 0.95994 0.84875 0.96959 1.62050 1.50725 1.10389 1.02205 1.19407 0.93662 0.85472 0.92893 1.21468 1.23404 0.96146 1.14381 0.91438 1.25872 0.98433 0.94866 1.00376 1.70103 1.44598 1.01047 1.41866 0.85432 0.78780 0.78327 0.78371 1.20212 1.21271 1.18346 1.21614 0.93420 0.99242 0.89519 1.22138 0.99708 0.99594 0.95674 1.22981 1.02606 0.91569 1.04885 1.23015 1.03429 1.01107 0.91853 1.74954 1.23856 1.01850 1.14969 1.78262 1.02781 1.10415 1.15637 0.90615 0.88478 0.94299 0.81987 0.81488 0.82031 0.84909 0.76941 0.88546 0.95006 0.96456 1.02299 0.92926 0.90485 0.96923 0.88887 0.89917 0.88809 0.87187 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.87 71.24 0.63 -1.50 16 2 C -0.07 -1.39 5.89 -19.75 -0.12 -1.50 16 3 C -0.11 -1.28 9.67 22.25 0.22 -1.06 16 4 C -0.09 -0.84 10.04 22.29 0.22 -0.62 16 5 C -0.11 -1.29 10.04 22.25 0.22 -1.07 16 6 C -0.11 -2.04 9.65 22.38 0.22 -1.83 16 7 C 0.08 1.80 6.17 38.07 0.24 2.04 16 8 N -0.24 -7.07 2.95 -187.05 -0.55 -7.62 16 9 C -0.02 -0.66 11.24 83.37 0.94 0.28 16 10 C -0.01 -0.32 6.00 41.60 0.25 -0.07 16 11 C 0.15 6.12 5.36 85.55 0.46 6.58 16 12 N -0.53 -23.85 4.38 -905.35 -3.96 -27.82 16 13 C 0.21 11.32 4.59 85.56 0.39 11.71 16 14 C -0.52 -28.60 8.58 25.60 0.22 -28.38 16 15 H 0.07 3.59 7.67 -2.91 -0.02 3.57 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.94 -56.16 13.29 21.45 0.28 -55.88 16 18 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 C 0.09 3.73 5.11 86.30 0.44 4.18 16 23 C -0.15 -5.81 4.98 -10.80 -0.05 -5.86 16 24 C -0.18 -6.40 9.91 30.62 0.30 -6.10 16 25 C -0.16 -4.71 10.25 30.62 0.31 -4.40 16 26 N -0.29 -10.95 11.08 -48.60 -0.54 -11.49 16 27 N -0.09 -3.21 11.47 37.02 0.42 -2.79 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.26 8.05 -2.39 -0.02 1.24 16 30 H 0.04 0.95 7.22 -2.39 -0.02 0.94 16 31 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 35 H 0.21 5.37 8.06 -2.91 -0.02 5.34 16 36 H 0.10 3.93 7.31 -2.38 -0.02 3.91 16 37 H 0.03 1.33 8.12 -2.39 -0.02 1.31 16 38 H 0.02 1.00 6.88 -2.39 -0.02 0.99 16 39 H -0.04 -2.38 8.01 -2.38 -0.02 -2.40 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.08 3.15 5.92 -2.39 -0.01 3.13 16 42 H 0.01 0.54 7.80 -2.39 -0.02 0.52 16 43 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 45 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -70.49 390.12 3.99 -66.50 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.95 Total: 20.58 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 5.35 Total: -27.02 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.34 Total: -105.59 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.49 3.99 -66.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289468942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.681 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds