Wall clock time and date at job start Tue Mar 31 2020 14:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00574 * 2 1 4 4 N 1.46492 * 109.47311 * 125.87369 * 3 2 1 5 5 C 1.37562 * 127.16819 * 83.25660 * 4 3 2 6 6 C 1.47854 * 126.46424 * 359.70439 * 5 4 3 7 7 C 1.39581 * 120.14727 * 351.84818 * 6 5 4 8 8 C 1.37937 * 119.85664 * 179.97438 * 7 6 5 9 9 C 1.38385 * 120.14429 * 0.02562 * 8 7 6 10 10 C 1.38331 * 120.28903 * 359.96520 * 9 8 7 11 11 C 1.37989 * 120.14498 * 359.77787 * 10 9 8 12 12 C 1.50701 * 120.07371 * 180.23907 * 11 10 9 13 13 N 1.31259 * 107.06280 * 179.73962 * 5 4 3 14 14 N 1.28510 * 109.93178 * 0.02562 * 13 5 4 15 15 C 1.31384 * 110.08151 * 359.97438 * 14 13 5 16 16 N 1.38405 * 126.36830 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99980 * 261.44204 * 16 15 14 18 18 C 1.46898 * 111.00158 * 25.39717 * 16 15 14 19 19 H 1.08994 * 109.47148 * 300.00220 * 18 16 15 20 20 C 1.53003 * 109.46939 * 60.00215 * 18 16 15 21 21 C 1.50705 * 109.47158 * 179.97438 * 18 16 15 22 22 H 1.08000 * 119.99864 * 0.02562 * 21 18 16 23 23 C 1.37869 * 120.00155 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99993 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00170 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.46919 * 90.00060 * 25 23 21 27 27 H 1.48501 * 109.47077 * 209.99985 * 25 23 21 28 28 H 1.48497 * 109.46847 * 330.00008 * 25 23 21 29 29 H 1.08000 * 119.99223 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00284 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99639 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.46960 * 5.87393 * 3 2 1 33 33 H 1.08996 * 109.47479 * 245.87837 * 3 2 1 34 34 H 1.08005 * 120.07594 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.93298 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.85211 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.92892 * 180.02562 * 10 9 8 38 38 H 1.09008 * 109.46504 * 270.25610 * 12 11 10 39 39 H 1.08995 * 109.47393 * 30.25633 * 12 11 10 40 40 H 1.08999 * 109.46785 * 150.25975 * 12 11 10 41 41 H 1.09007 * 109.46931 * 66.14891 * 17 16 15 42 42 H 1.09003 * 109.46983 * 186.14749 * 17 16 15 43 43 H 1.08999 * 109.47232 * 306.15408 * 17 16 15 44 44 H 1.08999 * 109.46847 * 299.99342 * 20 18 16 45 45 H 1.08994 * 109.47197 * 60.00034 * 20 18 16 46 46 H 1.08999 * 109.46728 * 180.02562 * 20 18 16 47 47 H 0.97003 * 119.99946 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0087 1.3232 1.1191 5 6 4.2699 0.7747 1.1509 6 6 4.9369 0.0411 0.0541 7 6 4.2241 -0.2994 -1.0967 8 6 4.8526 -0.9834 -2.1164 9 6 6.1866 -1.3325 -2.0002 10 6 6.8988 -0.9979 -0.8625 11 6 6.2834 -0.3091 0.1627 12 6 7.0622 0.0593 1.3992 13 7 4.7688 1.0249 2.3389 14 7 3.9176 1.6825 3.0420 15 6 2.8235 1.8925 2.3455 16 7 1.6932 2.5654 2.7758 17 6 0.6571 1.6236 3.2202 18 6 2.0238 3.5242 3.8384 19 1 2.4577 2.9927 4.6853 20 6 3.0310 4.5465 3.3077 21 6 0.7712 4.2364 4.2800 22 1 -0.1758 4.0001 3.8177 23 6 0.8341 5.1889 5.2748 24 7 1.9872 5.4764 5.8381 25 14 -0.7186 6.0712 5.8226 26 1 -1.3534 5.3138 6.9309 27 1 -0.3726 7.4373 6.2911 28 1 -1.6640 6.1640 4.6812 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3600 2.1309 0.1052 33 1 2.6090 1.4097 -0.9379 34 1 3.1828 -0.0280 -1.1885 35 1 4.3023 -1.2471 -3.0076 36 1 6.6738 -1.8683 -2.8014 37 1 7.9398 -1.2728 -0.7781 38 1 6.9830 -0.7445 2.1313 39 1 8.1094 0.2104 1.1374 40 1 6.6574 0.9782 1.8231 41 1 1.0007 1.0999 4.1124 42 1 -0.2572 2.1709 3.4495 43 1 0.4592 0.9010 2.4285 44 1 3.9370 4.0317 2.9881 45 1 2.5971 5.0780 2.4608 46 1 3.2766 5.2576 4.0963 47 1 2.0315 6.1468 6.5377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289647307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:52 Heat of formation + Delta-G solvation = 140.475470 kcal Electronic energy + Delta-G solvation = -28347.637134 eV Core-core repulsion = 24725.905638 eV Total energy + Delta-G solvation = -3621.731495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.96708 -40.22282 -38.81542 -37.40333 -34.94588 -33.95451 -33.79602 -32.61808 -31.25836 -30.02486 -28.25349 -27.71660 -27.35163 -26.15448 -24.12811 -23.75728 -22.80599 -21.83362 -20.91914 -20.79969 -18.60555 -18.18597 -17.60366 -17.34785 -16.94053 -16.84401 -16.49122 -15.85336 -15.71948 -15.34906 -15.03737 -14.77886 -14.60506 -14.47151 -14.28459 -13.97438 -13.76113 -13.57869 -13.25277 -13.03063 -12.95259 -12.83528 -12.71661 -12.55329 -12.50282 -12.24003 -12.17151 -12.06685 -11.93433 -11.79125 -11.45599 -11.17148 -11.08555 -10.76786 -10.57837 -10.55962 -9.79823 -9.62390 -8.97795 -8.13357 -6.28796 -0.14952 0.43368 0.87071 1.05881 1.44868 1.46304 1.54650 1.58202 1.87703 2.41663 2.86644 2.95863 3.17728 3.25152 3.52064 3.77691 3.85901 3.92967 4.07617 4.08133 4.17324 4.25802 4.45135 4.48187 4.51108 4.53786 4.69097 4.76186 4.78865 4.83608 4.86010 4.88384 4.91904 4.94507 4.98411 5.05847 5.09195 5.37043 5.41668 5.45548 5.53568 5.55332 5.56962 5.60732 5.63772 5.70895 5.87578 5.96005 6.05322 6.13683 6.56554 6.81314 7.40205 7.74501 8.93850 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.003516 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.643642 B = 7960.915295 C = 9055.264539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.205 4.205 3 C 0.124 3.876 4 N -0.464 5.464 5 C 0.208 3.792 6 C -0.040 4.040 7 C -0.124 4.124 8 C -0.121 4.121 9 C -0.099 4.099 10 C -0.123 4.123 11 C -0.061 4.061 12 C -0.122 4.122 13 N -0.302 5.302 14 N -0.364 5.364 15 C 0.374 3.626 16 N -0.458 5.458 17 C 0.048 3.952 18 C 0.241 3.759 19 H -0.022 1.022 20 C -0.115 4.115 21 C -0.525 4.525 22 H 0.076 0.924 23 C 0.012 3.988 24 N -0.920 5.920 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.260 1.260 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.010 0.990 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.010 0.990 45 H 0.030 0.970 46 H 0.065 0.935 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -15.223 -20.367 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.224 4.224 3 C 0.003 3.997 4 N -0.157 5.157 5 C -0.057 4.057 6 C -0.043 4.043 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.140 4.140 11 C -0.063 4.063 12 C -0.179 4.179 13 N -0.142 5.142 14 N -0.208 5.208 15 C 0.017 3.983 16 N -0.183 5.183 17 C -0.099 4.099 18 C 0.135 3.865 19 H -0.004 1.004 20 C -0.173 4.173 21 C -0.564 4.564 22 H 0.094 0.906 23 C -0.188 4.188 24 N -0.559 5.559 25 Si 0.796 3.204 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.184 1.184 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.029 0.971 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.271 -14.755 -19.419 24.494 hybrid contribution -0.959 0.522 0.716 1.305 sum 1.313 -14.233 -18.704 23.540 Atomic orbital electron populations 1.24264 0.94939 1.04011 0.93814 1.23009 0.96911 0.96790 1.05646 1.21482 0.91577 0.99146 0.87447 1.46447 1.14052 1.42884 1.12330 1.23163 0.83789 1.01907 0.96816 1.17601 0.93782 1.01374 0.91517 1.21922 1.01286 0.98761 0.92376 1.21412 0.95464 0.97973 0.98985 1.21718 0.94354 0.97946 0.97695 1.21287 1.01399 0.98359 0.92984 1.20125 0.92126 0.96702 0.97338 1.21017 0.99406 1.02779 0.94656 1.74274 1.23331 1.14629 1.01963 1.74713 1.01868 1.18270 1.25941 1.22839 0.95180 0.95913 0.84330 1.59026 1.04227 1.14391 1.40635 1.22355 0.94852 0.94310 0.98409 1.18967 0.95120 0.87478 0.84940 1.00409 1.21586 0.96253 0.99763 0.99742 1.21352 0.93710 1.21626 1.19671 0.90591 1.25820 0.99474 0.97412 0.96072 1.70083 1.26286 1.33351 1.26211 0.85359 0.79027 0.77344 0.78712 1.20078 1.21265 1.18375 0.87190 0.85546 0.86406 0.87541 0.85929 0.83541 0.82334 0.82307 0.83274 0.91528 0.90190 0.91457 0.97097 0.88684 0.90052 0.97115 0.95133 0.91585 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 13.31 67.78 0.90 -1.12 16 2 C -0.20 -3.89 8.02 25.64 0.21 -3.68 16 3 C 0.12 2.99 5.74 85.63 0.49 3.48 16 4 N -0.46 -16.15 2.81 -520.82 -1.47 -17.62 16 5 C 0.21 7.52 7.59 136.22 1.03 8.56 16 6 C -0.04 -1.12 5.87 -20.09 -0.12 -1.24 16 7 C -0.12 -2.50 8.60 22.52 0.19 -2.31 16 8 C -0.12 -1.72 10.03 22.23 0.22 -1.49 16 9 C -0.10 -1.33 10.04 22.33 0.22 -1.10 16 10 C -0.12 -2.17 9.69 22.23 0.22 -1.96 16 11 C -0.06 -1.55 5.91 -19.61 -0.12 -1.66 16 12 C -0.12 -3.38 9.08 71.24 0.65 -2.74 16 13 N -0.30 -13.24 8.89 -50.80 -0.45 -13.69 16 14 N -0.36 -18.04 10.29 -58.02 -0.60 -18.63 16 15 C 0.37 16.42 5.87 260.12 1.53 17.95 16 16 N -0.46 -20.50 4.59 -711.00 -3.26 -23.76 16 17 C 0.05 1.83 9.14 127.69 1.17 3.00 16 18 C 0.24 13.01 1.74 44.17 0.08 13.08 16 19 H -0.02 -1.37 7.88 -2.39 -0.02 -1.39 16 20 C -0.12 -6.32 8.81 71.98 0.63 -5.68 16 21 C -0.53 -28.52 7.95 25.60 0.20 -28.32 16 22 H 0.08 3.87 6.40 -2.91 -0.02 3.85 16 23 C 0.01 0.64 5.30 84.65 0.45 1.08 16 24 N -0.92 -54.48 11.32 21.44 0.24 -54.24 16 25 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 29 H 0.11 1.64 7.84 -2.91 -0.02 1.61 16 30 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.12 2.22 7.33 -2.91 -0.02 2.20 16 32 H 0.11 2.66 7.73 -2.38 -0.02 2.64 16 33 H 0.12 2.38 5.94 -2.39 -0.01 2.36 16 34 H 0.15 2.55 2.97 -2.91 -0.01 2.54 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.08 1.75 8.09 -2.39 -0.02 1.73 16 40 H 0.07 2.39 5.42 -2.39 -0.01 2.38 16 41 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.09 3.57 6.32 -2.39 -0.02 3.55 16 43 H 0.08 2.54 6.48 -2.39 -0.02 2.52 16 44 H 0.01 0.55 6.42 -2.39 -0.02 0.54 16 45 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 47 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -74.04 371.34 5.43 -68.61 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.98 Total: 18.57 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 7.96 Total: -4.15 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.54 Total: -127.95 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.04 5.43 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289647307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.086 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds