Wall clock time and date at job start Tue Mar 31 2020 14:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00309 * 2 1 4 4 N 1.46500 * 109.47155 * 130.77213 * 3 2 1 5 5 C 1.37554 * 127.16807 * 97.73909 * 4 3 2 6 6 C 1.47856 * 126.47102 * 0.04284 * 5 4 3 7 7 C 1.39588 * 120.14037 * 329.35231 * 6 5 4 8 8 C 1.37942 * 119.85083 * 179.97438 * 7 6 5 9 9 C 1.38382 * 120.14590 * 359.97438 * 8 7 6 10 10 C 1.38336 * 120.28809 * 359.97438 * 9 8 7 11 11 C 1.37987 * 120.14672 * 359.78241 * 10 9 8 12 12 C 1.50695 * 120.07393 * 180.25412 * 11 10 9 13 13 N 1.31256 * 107.05629 * 180.02562 * 5 4 3 14 14 N 1.28513 * 109.93754 * 359.97438 * 13 5 4 15 15 C 1.31377 * 110.07720 * 0.02562 * 14 13 5 16 16 N 1.38407 * 126.36754 * 179.97438 * 15 14 13 17 17 C 1.46894 * 110.99782 * 259.78843 * 16 15 14 18 18 C 1.46894 * 111.00014 * 23.74199 * 16 15 14 19 19 H 1.09000 * 109.47172 * 55.00051 * 18 16 15 20 20 C 1.53000 * 109.47345 * 294.99978 * 18 16 15 21 21 C 1.50703 * 109.47082 * 174.99947 * 18 16 15 22 22 H 1.07994 * 120.00071 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00115 * 180.02562 * 21 18 16 24 24 N 1.31525 * 119.99814 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 120.00234 * 180.02562 * 23 21 18 26 26 H 1.48504 * 109.47078 * 89.99668 * 25 23 21 27 27 H 1.48504 * 109.47182 * 209.99855 * 25 23 21 28 28 H 1.48496 * 109.47048 * 329.99820 * 25 23 21 29 29 H 1.08004 * 120.00405 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99719 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99719 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46770 * 10.76922 * 3 2 1 33 33 H 1.09005 * 109.47085 * 250.77034 * 3 2 1 34 34 H 1.07994 * 120.07688 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.92422 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.85661 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.92599 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47434 * 270.21632 * 12 11 10 39 39 H 1.09000 * 109.47086 * 30.21378 * 12 11 10 40 40 H 1.09006 * 109.46914 * 150.21578 * 12 11 10 41 41 H 1.09003 * 109.47387 * 57.47014 * 17 16 15 42 42 H 1.09001 * 109.47253 * 177.47130 * 17 16 15 43 43 H 1.09000 * 109.47535 * 297.46742 * 17 16 15 44 44 H 1.09002 * 109.47295 * 60.00110 * 20 18 16 45 45 H 1.09003 * 109.47233 * 180.02562 * 20 18 16 46 46 H 1.09000 * 109.47045 * 300.00151 * 20 18 16 47 47 H 0.97006 * 119.99551 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0888 1.2769 1.0460 5 6 4.4246 0.9862 0.8928 6 6 5.1092 0.6395 -0.3710 7 6 4.4170 -0.0276 -1.3830 8 6 5.0614 -0.3477 -2.5599 9 6 6.3911 -0.0085 -2.7386 10 6 7.0825 0.6536 -1.7399 11 6 6.4482 0.9841 -0.5599 12 6 7.2014 1.7104 0.5246 13 7 4.9766 1.0751 2.0803 14 7 4.0898 1.3975 2.9528 15 6 2.9175 1.5334 2.3754 16 7 1.7298 1.8734 2.9994 17 6 0.9032 0.6835 3.2417 18 6 1.9818 2.6028 4.2493 19 1 2.6113 3.4687 4.0440 20 6 2.6906 1.6811 5.2437 21 6 0.6717 3.0620 4.8358 22 1 -0.2553 2.8350 4.3304 23 6 0.6566 3.7727 6.0171 24 7 1.7856 4.0496 6.6324 25 14 -0.9673 4.3413 6.7445 26 1 -1.4947 3.2945 7.6564 27 1 -0.7557 5.5993 7.5047 28 1 -1.9423 4.5819 5.6507 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3709 2.1245 0.1920 33 1 2.5383 1.4504 -0.9704 34 1 3.3792 -0.2926 -1.2450 35 1 4.5271 -0.8642 -3.3435 36 1 6.8910 -0.2610 -3.6620 37 1 8.1199 0.9159 -1.8858 38 1 7.6710 0.9852 1.1891 39 1 7.9684 2.3408 0.0746 40 1 6.5095 2.3307 1.0945 41 1 1.4638 -0.0321 3.8432 42 1 -0.0035 0.9730 3.7729 43 1 0.6358 0.2266 2.2889 44 1 3.6382 1.3490 4.8195 45 1 2.8772 2.2223 6.1713 46 1 2.0611 0.8153 5.4489 47 1 1.7750 4.5494 7.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289647310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:58 Heat of formation + Delta-G solvation = 151.821171 kcal Electronic energy + Delta-G solvation = -28355.358004 eV Core-core repulsion = 24734.118495 eV Total energy + Delta-G solvation = -3621.239509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50459 -39.31631 -37.25508 -36.18945 -33.12860 -32.79802 -32.72400 -31.57634 -28.88389 -28.55867 -27.06754 -26.64888 -25.28396 -25.13284 -23.08527 -22.18743 -21.38581 -20.66882 -19.92978 -19.35271 -17.20744 -16.53902 -16.07128 -15.96422 -15.78581 -15.48487 -15.01079 -14.70499 -14.28398 -13.90020 -13.83314 -13.66483 -13.58289 -13.18371 -13.06909 -12.61781 -12.41558 -12.09131 -12.04336 -11.79233 -11.67242 -11.42071 -11.31531 -11.15842 -11.04629 -10.93241 -10.75013 -10.34078 -10.25625 -10.06415 -9.89426 -9.83081 -9.52976 -9.37346 -8.86147 -8.72731 -8.44657 -8.34271 -7.43046 -6.02518 -4.09746 0.88053 1.23591 1.85707 2.31005 2.75069 3.28379 3.29137 3.35454 3.37845 3.71997 4.31639 4.35521 4.57968 4.66476 4.71798 4.75110 4.77331 4.87753 4.96106 5.19292 5.27756 5.29403 5.44745 5.58361 5.62939 5.66886 5.72839 5.76830 5.85914 5.92933 6.02448 6.15826 6.23567 6.26942 6.30755 6.34018 6.40049 6.46457 6.54001 6.57722 6.77500 6.85882 7.02111 7.19244 7.39058 7.53800 7.69866 7.75784 7.97868 8.33851 8.49836 8.91683 9.26413 9.54559 11.03534 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.003533 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.121747 B = 7924.154266 C = 9030.775658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.186 4.186 3 C 0.137 3.863 4 N -0.472 5.472 5 C 0.183 3.817 6 C -0.002 4.002 7 C -0.112 4.112 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.121 4.121 11 C -0.044 4.044 12 C -0.114 4.114 13 N -0.267 5.267 14 N -0.310 5.310 15 C 0.393 3.607 16 N -0.460 5.460 17 C 0.034 3.966 18 C 0.229 3.771 19 H 0.044 0.956 20 C -0.183 4.183 21 C -0.512 4.512 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.884 5.884 25 Si 0.899 3.101 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -8.863 -19.508 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.205 4.205 3 C 0.014 3.986 4 N -0.166 5.166 5 C -0.080 4.080 6 C -0.005 4.005 7 C -0.132 4.132 8 C -0.144 4.144 9 C -0.130 4.130 10 C -0.139 4.139 11 C -0.046 4.046 12 C -0.171 4.171 13 N -0.108 5.108 14 N -0.155 5.155 15 C 0.038 3.962 16 N -0.184 5.184 17 C -0.114 4.114 18 C 0.125 3.875 19 H 0.062 0.938 20 C -0.243 4.243 21 C -0.551 4.551 22 H 0.081 0.919 23 C -0.139 4.139 24 N -0.522 5.522 25 Si 0.726 3.274 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.661 -8.429 -18.504 20.861 hybrid contribution -1.615 -0.129 -0.029 1.620 sum 3.047 -8.559 -18.532 20.639 Atomic orbital electron populations 1.23967 0.95431 1.02803 0.96670 1.23072 0.96488 0.97839 1.03078 1.20980 0.89738 0.97623 0.90230 1.46325 1.08226 1.53958 1.08134 1.22384 0.81051 1.08486 0.96124 1.17385 0.93003 1.00593 0.89469 1.21377 1.00146 0.98365 0.93299 1.20971 0.95065 1.01111 0.97261 1.21221 0.94573 0.98302 0.98918 1.20981 1.00012 0.99802 0.93079 1.19989 0.92499 0.96461 0.95643 1.20887 0.99792 1.00048 0.96367 1.74399 1.24837 1.15343 0.96177 1.74948 0.97453 1.20989 1.22062 1.23158 0.94348 0.97309 0.81348 1.59251 1.08333 1.21403 1.29437 1.22452 0.98362 0.90237 1.00304 1.19363 0.96744 0.91143 0.80271 0.93808 1.22648 0.99304 0.98684 1.03620 1.21022 0.91973 1.35343 1.06763 0.91860 1.24896 0.96495 0.95840 0.96697 1.69934 1.25313 1.39413 1.17577 0.86494 0.83582 0.78149 0.79132 1.20705 1.21211 1.19882 0.87683 0.87554 0.86937 0.87657 0.88142 0.85579 0.85793 0.85925 0.85547 0.90184 0.92182 0.90172 0.95055 0.88932 0.92742 0.92166 0.89574 0.96117 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 12.85 29.02 0.37 -1.05 16 2 C -0.19 -2.01 7.41 -36.03 -0.27 -2.27 16 3 C 0.14 1.73 5.73 -5.20 -0.03 1.70 16 4 N -0.47 -8.02 2.81 -115.97 -0.33 -8.34 16 5 C 0.18 3.17 7.02 -153.78 -1.08 2.09 16 6 C 0.00 -0.03 5.77 -104.97 -0.61 -0.63 16 7 C -0.11 -1.26 8.40 -39.19 -0.33 -1.59 16 8 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 9 C -0.11 -0.99 10.04 -39.49 -0.40 -1.38 16 10 C -0.12 -1.22 9.69 -39.64 -0.38 -1.60 16 11 C -0.04 -0.56 5.91 -104.23 -0.62 -1.18 16 12 C -0.11 -1.49 8.98 36.00 0.32 -1.17 16 13 N -0.27 -5.43 9.92 32.59 0.32 -5.11 16 14 N -0.31 -7.05 8.81 30.31 0.27 -6.79 16 15 C 0.39 8.21 6.65 -318.90 -2.12 6.09 16 16 N -0.46 -9.97 4.77 -176.10 -0.84 -10.81 16 17 C 0.03 0.64 8.71 60.06 0.52 1.16 16 18 C 0.23 5.90 2.17 -68.87 -0.15 5.75 16 19 H 0.04 1.29 8.11 -51.93 -0.42 0.86 16 20 C -0.18 -4.72 8.28 37.16 0.31 -4.41 16 21 C -0.51 -13.73 7.85 -34.44 -0.27 -14.00 16 22 H 0.06 1.65 6.79 -52.49 -0.36 1.29 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 24 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 25 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.10 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.11 0.98 7.87 -52.48 -0.41 0.57 16 31 H 0.11 1.21 7.47 -52.48 -0.39 0.81 16 32 H 0.11 1.37 7.82 -51.93 -0.41 0.96 16 33 H 0.10 1.07 6.25 -51.93 -0.32 0.74 16 34 H 0.13 1.28 4.70 -52.49 -0.25 1.04 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 41 H 0.03 0.63 6.65 -51.93 -0.35 0.28 16 42 H 0.09 1.82 6.35 -51.93 -0.33 1.49 16 43 H 0.05 0.87 4.77 -51.93 -0.25 0.62 16 44 H 0.06 1.54 5.17 -51.93 -0.27 1.27 16 45 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 46 H 0.02 0.50 6.53 -51.93 -0.34 0.16 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -31.38 366.77 -11.05 -42.43 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.39 Total: 4.31 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -5.21 Total: -12.43 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.05 Total: -55.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.38 -11.05 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289647310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.253 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds