Wall clock time and date at job start Tue Mar 31 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00309 * 2 1 4 4 N 1.46500 * 109.47155 * 130.77213 * 3 2 1 5 5 C 1.37554 * 127.16807 * 97.73909 * 4 3 2 6 6 C 1.47856 * 126.47102 * 0.04284 * 5 4 3 7 7 C 1.39588 * 120.14037 * 329.35231 * 6 5 4 8 8 C 1.37942 * 119.85083 * 179.97438 * 7 6 5 9 9 C 1.38382 * 120.14590 * 359.97438 * 8 7 6 10 10 C 1.38336 * 120.28809 * 359.97438 * 9 8 7 11 11 C 1.37987 * 120.14672 * 359.78241 * 10 9 8 12 12 C 1.50695 * 120.07393 * 180.25412 * 11 10 9 13 13 N 1.31256 * 107.05629 * 180.02562 * 5 4 3 14 14 N 1.28513 * 109.93754 * 359.97438 * 13 5 4 15 15 C 1.31377 * 110.07720 * 0.02562 * 14 13 5 16 16 N 1.38407 * 126.36754 * 179.97438 * 15 14 13 17 17 C 1.46894 * 110.99782 * 259.78843 * 16 15 14 18 18 C 1.46894 * 111.00014 * 23.74199 * 16 15 14 19 19 H 1.09000 * 109.47172 * 55.00051 * 18 16 15 20 20 C 1.53000 * 109.47345 * 294.99978 * 18 16 15 21 21 C 1.50703 * 109.47082 * 174.99947 * 18 16 15 22 22 H 1.07994 * 120.00071 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00115 * 180.02562 * 21 18 16 24 24 N 1.31525 * 119.99814 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 120.00234 * 180.02562 * 23 21 18 26 26 H 1.48504 * 109.47078 * 89.99668 * 25 23 21 27 27 H 1.48504 * 109.47182 * 209.99855 * 25 23 21 28 28 H 1.48496 * 109.47048 * 329.99820 * 25 23 21 29 29 H 1.08004 * 120.00405 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99719 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99719 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46770 * 10.76922 * 3 2 1 33 33 H 1.09005 * 109.47085 * 250.77034 * 3 2 1 34 34 H 1.07994 * 120.07688 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.92422 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.85661 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.92599 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47434 * 270.21632 * 12 11 10 39 39 H 1.09000 * 109.47086 * 30.21378 * 12 11 10 40 40 H 1.09006 * 109.46914 * 150.21578 * 12 11 10 41 41 H 1.09003 * 109.47387 * 57.47014 * 17 16 15 42 42 H 1.09001 * 109.47253 * 177.47130 * 17 16 15 43 43 H 1.09000 * 109.47535 * 297.46742 * 17 16 15 44 44 H 1.09002 * 109.47295 * 60.00110 * 20 18 16 45 45 H 1.09003 * 109.47233 * 180.02562 * 20 18 16 46 46 H 1.09000 * 109.47045 * 300.00151 * 20 18 16 47 47 H 0.97006 * 119.99551 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0888 1.2769 1.0460 5 6 4.4246 0.9862 0.8928 6 6 5.1092 0.6395 -0.3710 7 6 4.4170 -0.0276 -1.3830 8 6 5.0614 -0.3477 -2.5599 9 6 6.3911 -0.0085 -2.7386 10 6 7.0825 0.6536 -1.7399 11 6 6.4482 0.9841 -0.5599 12 6 7.2014 1.7104 0.5246 13 7 4.9766 1.0751 2.0803 14 7 4.0898 1.3975 2.9528 15 6 2.9175 1.5334 2.3754 16 7 1.7298 1.8734 2.9994 17 6 0.9032 0.6835 3.2417 18 6 1.9818 2.6028 4.2493 19 1 2.6113 3.4687 4.0440 20 6 2.6906 1.6811 5.2437 21 6 0.6717 3.0620 4.8358 22 1 -0.2553 2.8350 4.3304 23 6 0.6566 3.7727 6.0171 24 7 1.7856 4.0496 6.6324 25 14 -0.9673 4.3413 6.7445 26 1 -1.4947 3.2945 7.6564 27 1 -0.7557 5.5993 7.5047 28 1 -1.9423 4.5819 5.6507 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3709 2.1245 0.1920 33 1 2.5383 1.4504 -0.9704 34 1 3.3792 -0.2926 -1.2450 35 1 4.5271 -0.8642 -3.3435 36 1 6.8910 -0.2610 -3.6620 37 1 8.1199 0.9159 -1.8858 38 1 7.6710 0.9852 1.1891 39 1 7.9684 2.3408 0.0746 40 1 6.5095 2.3307 1.0945 41 1 1.4638 -0.0321 3.8432 42 1 -0.0035 0.9730 3.7729 43 1 0.6358 0.2266 2.2889 44 1 3.6382 1.3490 4.8195 45 1 2.8772 2.2223 6.1713 46 1 2.0611 0.8153 5.4489 47 1 1.7750 4.5494 7.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289647310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:57 Heat of formation + Delta-G solvation = 136.525840 kcal Electronic energy + Delta-G solvation = -28356.021259 eV Core-core repulsion = 24734.118495 eV Total energy + Delta-G solvation = -3621.902764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.94732 -40.22012 -38.99255 -37.30921 -34.86505 -33.95186 -33.82961 -32.65793 -30.75504 -29.98556 -28.10435 -27.68471 -27.23541 -26.86789 -24.17508 -23.53311 -22.74555 -21.75133 -21.05529 -20.77353 -18.51371 -18.19534 -17.42915 -17.32605 -17.04630 -16.66733 -16.52263 -15.92276 -15.55167 -15.40586 -14.95980 -14.81456 -14.65794 -14.52482 -14.26302 -13.99257 -13.72809 -13.43849 -13.16190 -13.11188 -13.05674 -12.92402 -12.72021 -12.61140 -12.53502 -12.34441 -12.12222 -12.05095 -11.99304 -11.79289 -11.53750 -11.16009 -10.86902 -10.64513 -10.47804 -10.41412 -9.81767 -9.63847 -8.99366 -8.11825 -6.27179 -0.09586 0.42767 0.91844 0.99034 1.44156 1.45404 1.54372 1.57890 1.86810 2.41865 2.82195 3.01439 3.17282 3.25977 3.61508 3.76526 3.89632 3.91804 4.06155 4.10566 4.16828 4.27386 4.43123 4.51571 4.53337 4.55296 4.64422 4.71155 4.78417 4.83223 4.84518 4.88640 4.95341 4.99500 5.03810 5.14798 5.30674 5.36185 5.36758 5.49980 5.53448 5.55115 5.57406 5.63873 5.64337 5.70053 5.83312 6.00744 6.05904 6.23386 6.60878 6.82293 7.41588 7.76212 8.94643 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.003533 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.121747 B = 7924.154266 C = 9030.775658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.201 4.201 3 C 0.131 3.869 4 N -0.464 5.464 5 C 0.208 3.792 6 C -0.040 4.040 7 C -0.110 4.110 8 C -0.120 4.120 9 C -0.097 4.097 10 C -0.121 4.121 11 C -0.061 4.061 12 C -0.110 4.110 13 N -0.306 5.306 14 N -0.355 5.355 15 C 0.370 3.630 16 N -0.456 5.456 17 C 0.039 3.961 18 C 0.242 3.758 19 H -0.005 1.005 20 C -0.166 4.166 21 C -0.522 4.522 22 H 0.072 0.928 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.016 0.984 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 -10.440 -23.339 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.220 4.220 3 C 0.010 3.990 4 N -0.158 5.158 5 C -0.057 4.057 6 C -0.043 4.043 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.115 4.115 10 C -0.139 4.139 11 C -0.063 4.063 12 C -0.166 4.166 13 N -0.146 5.146 14 N -0.199 5.199 15 C 0.014 3.986 16 N -0.180 5.180 17 C -0.108 4.108 18 C 0.136 3.864 19 H 0.013 0.987 20 C -0.225 4.225 21 C -0.560 4.560 22 H 0.091 0.909 23 C -0.189 4.189 24 N -0.559 5.559 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.213 1.213 28 H -0.185 1.185 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.168 0.832 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.395 -10.026 -22.374 24.752 hybrid contribution -1.099 0.298 0.916 1.461 sum 2.296 -9.728 -21.459 23.672 Atomic orbital electron populations 1.24213 0.94910 1.04021 0.94013 1.22949 0.96877 0.96761 1.05365 1.21324 0.89094 0.98833 0.89758 1.46488 1.09028 1.52813 1.07422 1.23112 0.80985 1.05091 0.96531 1.17575 0.93906 1.03765 0.89013 1.21541 1.00605 0.97642 0.93222 1.21400 0.95400 1.00076 0.96906 1.21711 0.94409 0.95886 0.99525 1.21277 1.01206 0.99339 0.92041 1.20096 0.92255 0.97268 0.96664 1.20784 0.99605 0.99754 0.96469 1.74310 1.25016 1.17897 0.97358 1.74732 0.98641 1.22281 1.24236 1.22993 0.93625 0.99098 0.82914 1.59131 1.09027 1.22446 1.27416 1.22491 0.97283 0.89077 1.01906 1.18939 0.95610 0.89997 0.81890 0.98700 1.22446 0.99435 0.98326 1.02325 1.21314 0.92436 1.35308 1.06991 0.90943 1.25812 1.00046 0.95857 0.97136 1.70103 1.27737 1.40124 1.17942 0.85375 0.79223 0.77475 0.78449 1.19924 1.21345 1.18545 0.85503 0.87271 0.86615 0.88192 0.85997 0.84678 0.82366 0.82227 0.83157 0.91127 0.89771 0.93894 0.96554 0.89380 0.89286 0.92396 0.92398 0.95735 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 12.85 67.78 0.87 -1.25 16 2 C -0.20 -3.90 7.41 25.65 0.19 -3.71 16 3 C 0.13 3.17 5.73 85.63 0.49 3.66 16 4 N -0.46 -16.10 2.81 -520.81 -1.47 -17.57 16 5 C 0.21 7.44 7.02 136.22 0.96 8.40 16 6 C -0.04 -1.09 5.77 -20.09 -0.12 -1.21 16 7 C -0.11 -2.20 8.40 22.53 0.19 -2.01 16 8 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 9 C -0.10 -1.25 10.04 22.33 0.22 -1.02 16 10 C -0.12 -2.06 9.69 22.23 0.22 -1.84 16 11 C -0.06 -1.51 5.91 -19.61 -0.12 -1.63 16 12 C -0.11 -2.97 8.98 71.23 0.64 -2.33 16 13 N -0.31 -13.35 9.92 -50.80 -0.50 -13.86 16 14 N -0.35 -17.33 8.81 -58.02 -0.51 -17.85 16 15 C 0.37 16.23 6.65 260.12 1.73 17.96 16 16 N -0.46 -20.52 4.77 -711.04 -3.39 -23.90 16 17 C 0.04 1.50 8.71 127.69 1.11 2.61 16 18 C 0.24 13.13 2.17 44.17 0.10 13.23 16 19 H 0.00 -0.31 8.11 -2.39 -0.02 -0.33 16 20 C -0.17 -9.10 8.28 71.98 0.60 -8.50 16 21 C -0.52 -28.68 7.85 25.60 0.20 -28.48 16 22 H 0.07 3.77 6.79 -2.91 -0.02 3.75 16 23 C 0.01 0.59 5.30 84.65 0.45 1.04 16 24 N -0.92 -54.93 11.32 21.45 0.24 -54.69 16 25 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 29 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.11 1.70 7.87 -2.91 -0.02 1.68 16 31 H 0.12 2.21 7.47 -2.91 -0.02 2.19 16 32 H 0.10 2.54 7.82 -2.39 -0.02 2.52 16 33 H 0.12 2.37 6.25 -2.38 -0.01 2.36 16 34 H 0.14 2.37 4.70 -2.91 -0.01 2.36 16 35 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 40 H 0.04 1.48 6.17 -2.38 -0.01 1.47 16 41 H 0.02 0.66 6.65 -2.39 -0.02 0.64 16 42 H 0.09 3.44 6.35 -2.39 -0.02 3.43 16 43 H 0.09 2.74 4.77 -2.39 -0.01 2.72 16 44 H 0.06 3.20 5.17 -2.39 -0.01 3.18 16 45 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 46 H 0.02 1.26 6.53 -2.39 -0.02 1.24 16 47 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -74.21 366.77 5.34 -68.87 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.99 Total: 20.10 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 7.95 Total: -6.51 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.63 Total: -127.86 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.21 5.34 -68.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289647310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.394 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds