Wall clock time and date at job start Tue Mar 31 2020 14:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38151 * 120.03057 * 2 1 4 4 C 1.38254 * 120.06406 * 180.02562 * 3 2 1 5 5 C 1.38295 * 120.12883 * 359.97438 * 4 3 2 6 6 C 1.38106 * 120.06892 * 359.78457 * 5 4 3 7 7 C 1.38802 * 120.03507 * 180.02562 * 2 1 3 8 8 N 1.40246 * 120.06024 * 359.95099 * 7 2 1 9 9 C 1.36115 * 125.94044 * 131.55628 * 8 7 2 10 10 C 1.35373 * 106.05258 * 179.97438 * 9 8 7 11 11 C 1.50695 * 126.73036 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47029 * 95.00387 * 11 10 9 13 13 C 1.36940 * 119.99800 * 269.99710 * 12 11 10 14 14 H 1.08004 * 119.99441 * 141.39460 * 13 12 11 15 15 C 1.38808 * 120.00200 * 321.39431 * 13 12 11 16 16 N 1.31617 * 120.00085 * 156.38761 * 15 13 12 17 17 Si 1.86795 * 119.99978 * 336.38966 * 15 13 12 18 18 H 1.48504 * 109.47263 * 94.12299 * 17 15 13 19 19 H 1.48498 * 109.47628 * 214.12126 * 17 15 13 20 20 H 1.48500 * 109.47195 * 334.12283 * 17 15 13 21 21 C 1.46498 * 120.00183 * 89.99522 * 12 11 10 22 22 C 1.55236 * 110.47127 * 236.84951 * 21 12 11 23 23 C 1.54885 * 102.58967 * 203.39262 * 22 21 12 24 24 C 1.54267 * 104.31218 * 37.93484 * 23 22 21 25 25 C 1.53882 * 106.59598 * 336.32139 * 24 23 22 26 26 N 1.33777 * 106.53409 * 0.23864 * 10 9 8 27 27 N 1.28608 * 109.06134 * 359.59732 * 26 10 9 28 28 H 1.09000 * 109.47013 * 269.15272 * 1 2 3 29 29 H 1.09003 * 109.47245 * 29.15507 * 1 2 3 30 30 H 1.09003 * 109.47071 * 149.15550 * 1 2 3 31 31 H 1.08000 * 119.96493 * 0.04751 * 3 2 1 32 32 H 1.07998 * 119.93202 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.96711 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.03737 * 180.23843 * 6 5 4 35 35 H 1.08002 * 126.97249 * 359.96753 * 9 8 7 36 36 H 1.09000 * 109.47621 * 335.00056 * 11 10 9 37 37 H 1.09002 * 109.47201 * 214.99714 * 11 10 9 38 38 H 0.96999 * 120.00027 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.43406 * 359.50234 * 21 12 11 40 40 H 1.09003 * 110.89819 * 85.10470 * 22 21 12 41 41 H 1.09002 * 110.76344 * 321.62835 * 22 21 12 42 42 H 1.09000 * 110.49178 * 279.18794 * 23 22 21 43 43 H 1.09004 * 110.48828 * 156.67532 * 23 22 21 44 44 H 1.08997 * 110.03695 * 95.60664 * 24 23 22 45 45 H 1.09001 * 110.03035 * 216.99008 * 24 23 22 46 46 H 1.08997 * 110.03077 * 119.28947 * 25 24 23 47 47 H 1.09000 * 110.02877 * 240.66565 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1969 -0.0005 5 6 4.2758 0.0012 -0.0005 6 6 3.5902 -1.1976 0.0045 7 6 2.2018 -1.2016 -0.0005 8 7 1.5026 -2.4174 0.0000 9 6 1.7373 -3.4744 -0.8249 10 6 0.8385 -4.4258 -0.4792 11 6 0.6873 -5.7907 -1.0998 12 7 1.4414 -6.7706 -0.3141 13 6 2.7513 -7.0297 -0.6179 14 1 3.4670 -7.1939 0.1742 15 6 3.1593 -7.0812 -1.9436 16 7 4.4200 -6.8641 -2.2532 17 14 1.9191 -7.4587 -3.2885 18 1 1.3951 -6.1875 -3.8496 19 1 2.5787 -8.2401 -4.3652 20 1 0.7973 -8.2484 -2.7199 21 6 0.7942 -7.4733 0.7965 22 6 1.5812 -7.2459 2.1151 23 6 1.1677 -8.4693 2.9703 24 6 1.0911 -9.6325 1.9599 25 6 0.8536 -8.9992 0.5777 26 7 0.1071 -3.9144 0.5173 27 7 0.5276 -2.7280 0.7809 28 1 -0.3633 -0.0152 1.0276 29 1 -0.3634 0.8975 -0.5007 30 1 -0.3633 -0.8823 -0.5269 31 1 1.6584 2.1313 0.0008 32 1 4.1193 2.1331 -0.0001 33 1 5.3558 0.0048 -0.0005 34 1 4.1333 -2.1311 0.0084 35 1 2.4883 -3.5405 -1.5983 36 1 1.0705 -5.7705 -2.1200 37 1 -0.3665 -6.0691 -1.1130 38 1 4.7050 -6.8998 -3.1796 39 1 -0.2390 -7.1435 0.9051 40 1 1.2742 -6.3171 2.5959 41 1 2.6553 -7.2495 1.9296 42 1 0.1950 -8.3007 3.4324 43 1 1.9203 -8.6744 3.7317 44 1 2.0282 -10.1892 1.9595 45 1 0.2639 -10.2949 2.2151 46 1 1.6755 -9.2485 -0.0934 47 1 -0.0890 -9.3545 0.1613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290112965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:57 Heat of formation + Delta-G solvation = 146.864479 kcal Electronic energy + Delta-G solvation = -28070.331668 eV Core-core repulsion = 24448.877221 eV Total energy + Delta-G solvation = -3621.454447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.86298 -39.49927 -37.79693 -34.98921 -34.06015 -32.90655 -31.74717 -30.55738 -29.92792 -27.88335 -27.20868 -27.12379 -25.90970 -23.79182 -22.83420 -22.04360 -21.18317 -20.33911 -19.81206 -18.99603 -17.96311 -16.53170 -16.33801 -15.92660 -15.42324 -15.29982 -14.84949 -14.65152 -14.36354 -14.10382 -13.84695 -13.48292 -13.38772 -13.10356 -12.68252 -12.60120 -12.48245 -12.43630 -12.27044 -11.68534 -11.57070 -11.34213 -11.26240 -10.97741 -10.77983 -10.52545 -10.51881 -10.46896 -10.30903 -10.17253 -9.96094 -9.83327 -9.64684 -9.47968 -9.04378 -8.73280 -8.53736 -8.49990 -6.83480 -6.06381 -3.46212 0.80347 1.09985 2.17802 2.67256 3.12687 3.26502 3.44435 3.45454 3.50621 4.46954 4.57553 4.57854 4.80715 4.90391 5.03478 5.03839 5.17073 5.21526 5.37534 5.42386 5.44082 5.47018 5.54832 5.63883 5.67096 5.67480 5.78181 5.91644 6.03852 6.11864 6.13917 6.22895 6.23271 6.26380 6.28164 6.33948 6.44526 6.48161 6.55717 6.56638 6.59468 6.63708 6.78938 6.80306 7.04020 7.12678 7.24425 7.25212 8.01553 8.39123 8.96096 9.02370 9.66525 10.09740 11.08735 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004015 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.269326 B = 6972.868539 C = 7817.189770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.063 4.063 3 C -0.113 4.113 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.099 4.099 7 C 0.125 3.875 8 N -0.258 5.258 9 C -0.030 4.030 10 C -0.007 4.007 11 C 0.213 3.787 12 N -0.586 5.586 13 C -0.257 4.257 14 H 0.080 0.920 15 C 0.040 3.960 16 N -0.895 5.895 17 Si 0.862 3.138 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.263 1.263 21 C 0.177 3.823 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.137 4.137 26 N -0.262 5.262 27 N -0.093 5.093 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.187 0.813 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.082 0.918 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 12.349 3.549 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.120 4.120 7 C 0.034 3.966 8 N -0.048 5.048 9 C -0.178 4.178 10 C -0.146 4.146 11 C 0.084 3.916 12 N -0.305 5.305 13 C -0.386 4.386 14 H 0.097 0.903 15 C -0.161 4.161 16 N -0.536 5.536 17 Si 0.692 3.308 18 H -0.213 1.213 19 H -0.228 1.228 20 H -0.188 1.188 21 C 0.070 3.930 22 C -0.170 4.170 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.176 4.176 26 N -0.130 5.130 27 N -0.071 5.071 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.204 0.796 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.660 12.721 4.554 14.292 hybrid contribution 0.471 -0.495 -1.696 1.829 sum -4.189 12.226 2.857 13.236 Atomic orbital electron populations 1.20792 0.90006 1.02692 1.03399 1.19862 0.96971 0.91242 0.98416 1.20943 0.94231 0.96880 1.01090 1.21281 0.94180 0.98386 0.98771 1.21044 1.00425 0.91360 1.00166 1.21248 0.91693 1.00163 0.98868 1.17428 0.90602 0.82377 1.06167 1.44504 1.24397 1.11413 1.24456 1.23697 1.05314 0.87628 1.01137 1.23397 0.95158 0.98962 0.97059 1.19708 0.96055 0.81640 0.94185 1.44191 1.10787 1.40037 1.35462 1.18656 0.83201 1.44898 0.91845 0.90261 1.25465 0.95141 0.98190 0.97275 1.69890 1.16146 1.49126 1.18441 0.87155 0.82767 0.78547 0.82361 1.21263 1.22795 1.18776 1.21318 0.94309 0.90174 0.87215 1.22871 1.01884 0.95906 0.96295 1.22274 1.00072 0.96268 0.97422 1.22035 1.00394 0.97278 0.95882 1.22553 1.01481 0.97150 0.96422 1.74950 1.22935 1.00927 1.14202 1.78278 1.02267 1.11313 1.15215 0.89992 0.91358 0.91469 0.85026 0.85275 0.84784 0.84371 0.79607 0.91059 0.92212 0.92716 0.92188 0.93058 0.90776 0.92638 0.92865 0.92522 0.93208 0.89944 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.01 36.01 0.32 -1.02 16 2 C -0.06 -0.80 5.89 -104.44 -0.62 -1.41 16 3 C -0.11 -1.11 9.69 -39.61 -0.38 -1.50 16 4 C -0.11 -0.98 10.04 -39.55 -0.40 -1.38 16 5 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 6 C -0.10 -1.34 9.65 -39.41 -0.38 -1.72 16 7 C 0.12 1.88 6.17 -83.58 -0.52 1.37 16 8 N -0.26 -4.65 2.91 -10.47 -0.03 -4.69 16 9 C -0.03 -0.59 11.25 -16.67 -0.19 -0.78 16 10 C -0.01 -0.15 6.83 -82.77 -0.57 -0.72 16 11 C 0.21 4.59 5.06 -5.19 -0.03 4.57 16 12 N -0.59 -13.37 2.07 -164.93 -0.34 -13.71 16 13 C -0.26 -6.67 8.29 -15.06 -0.12 -6.80 16 14 H 0.08 2.28 6.71 -52.48 -0.35 1.92 16 15 C 0.04 1.07 5.27 -17.43 -0.09 0.98 16 16 N -0.90 -25.46 13.97 55.49 0.78 -24.69 16 17 Si 0.86 20.69 25.24 -169.99 -4.29 16.40 16 18 H -0.28 -6.59 6.61 56.52 0.37 -6.21 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 20 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.18 3.60 3.39 -66.09 -0.22 3.37 16 22 C -0.13 -2.55 6.45 -24.55 -0.16 -2.71 16 23 C -0.12 -1.99 6.82 -25.07 -0.17 -2.16 16 24 C -0.12 -1.93 6.80 -25.61 -0.17 -2.10 16 25 C -0.14 -2.62 6.42 -25.61 -0.16 -2.78 16 26 N -0.26 -5.49 12.39 33.29 0.41 -5.07 16 27 N -0.09 -1.82 11.39 60.35 0.69 -1.14 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.07 0.96 6.93 -51.93 -0.36 0.60 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.96 8.05 -52.49 -0.42 1.54 16 35 H 0.19 3.49 8.06 -52.49 -0.42 3.07 16 36 H 0.07 1.61 3.47 -51.93 -0.18 1.43 16 37 H 0.06 1.20 7.95 -51.93 -0.41 0.78 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.62 6.45 -51.93 -0.33 1.28 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.80 7.04 -51.93 -0.37 1.43 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -29.64 375.96 -8.45 -38.09 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.07 Total: 5.49 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -4.25 Total: -16.34 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 1.50 Total: -49.29 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.29 Total: 16.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.64 -8.45 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290112965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.951 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds