Wall clock time and date at job start Tue Mar 31 2020 14:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38151 * 120.03057 * 2 1 4 4 C 1.38254 * 120.06406 * 180.02562 * 3 2 1 5 5 C 1.38295 * 120.12883 * 359.97438 * 4 3 2 6 6 C 1.38106 * 120.06892 * 359.78457 * 5 4 3 7 7 C 1.38802 * 120.03507 * 180.02562 * 2 1 3 8 8 N 1.40246 * 120.06024 * 359.95099 * 7 2 1 9 9 C 1.36115 * 125.94044 * 131.55628 * 8 7 2 10 10 C 1.35373 * 106.05258 * 179.97438 * 9 8 7 11 11 C 1.50695 * 126.73036 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47029 * 95.00387 * 11 10 9 13 13 C 1.36940 * 119.99800 * 269.99710 * 12 11 10 14 14 H 1.08004 * 119.99441 * 141.39460 * 13 12 11 15 15 C 1.38808 * 120.00200 * 321.39431 * 13 12 11 16 16 N 1.31617 * 120.00085 * 156.38761 * 15 13 12 17 17 Si 1.86795 * 119.99978 * 336.38966 * 15 13 12 18 18 H 1.48504 * 109.47263 * 94.12299 * 17 15 13 19 19 H 1.48498 * 109.47628 * 214.12126 * 17 15 13 20 20 H 1.48500 * 109.47195 * 334.12283 * 17 15 13 21 21 C 1.46498 * 120.00183 * 89.99522 * 12 11 10 22 22 C 1.55236 * 110.47127 * 236.84951 * 21 12 11 23 23 C 1.54885 * 102.58967 * 203.39262 * 22 21 12 24 24 C 1.54267 * 104.31218 * 37.93484 * 23 22 21 25 25 C 1.53882 * 106.59598 * 336.32139 * 24 23 22 26 26 N 1.33777 * 106.53409 * 0.23864 * 10 9 8 27 27 N 1.28608 * 109.06134 * 359.59732 * 26 10 9 28 28 H 1.09000 * 109.47013 * 269.15272 * 1 2 3 29 29 H 1.09003 * 109.47245 * 29.15507 * 1 2 3 30 30 H 1.09003 * 109.47071 * 149.15550 * 1 2 3 31 31 H 1.08000 * 119.96493 * 0.04751 * 3 2 1 32 32 H 1.07998 * 119.93202 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.96711 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.03737 * 180.23843 * 6 5 4 35 35 H 1.08002 * 126.97249 * 359.96753 * 9 8 7 36 36 H 1.09000 * 109.47621 * 335.00056 * 11 10 9 37 37 H 1.09002 * 109.47201 * 214.99714 * 11 10 9 38 38 H 0.96999 * 120.00027 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.43406 * 359.50234 * 21 12 11 40 40 H 1.09003 * 110.89819 * 85.10470 * 22 21 12 41 41 H 1.09002 * 110.76344 * 321.62835 * 22 21 12 42 42 H 1.09000 * 110.49178 * 279.18794 * 23 22 21 43 43 H 1.09004 * 110.48828 * 156.67532 * 23 22 21 44 44 H 1.08997 * 110.03695 * 95.60664 * 24 23 22 45 45 H 1.09001 * 110.03035 * 216.99008 * 24 23 22 46 46 H 1.08997 * 110.03077 * 119.28947 * 25 24 23 47 47 H 1.09000 * 110.02877 * 240.66565 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5810 1.1969 -0.0005 5 6 4.2758 0.0012 -0.0005 6 6 3.5902 -1.1976 0.0045 7 6 2.2018 -1.2016 -0.0005 8 7 1.5026 -2.4174 0.0000 9 6 1.7373 -3.4744 -0.8249 10 6 0.8385 -4.4258 -0.4792 11 6 0.6873 -5.7907 -1.0998 12 7 1.4414 -6.7706 -0.3141 13 6 2.7513 -7.0297 -0.6179 14 1 3.4670 -7.1939 0.1742 15 6 3.1593 -7.0812 -1.9436 16 7 4.4200 -6.8641 -2.2532 17 14 1.9191 -7.4587 -3.2885 18 1 1.3951 -6.1875 -3.8496 19 1 2.5787 -8.2401 -4.3652 20 1 0.7973 -8.2484 -2.7199 21 6 0.7942 -7.4733 0.7965 22 6 1.5812 -7.2459 2.1151 23 6 1.1677 -8.4693 2.9703 24 6 1.0911 -9.6325 1.9599 25 6 0.8536 -8.9992 0.5777 26 7 0.1071 -3.9144 0.5173 27 7 0.5276 -2.7280 0.7809 28 1 -0.3633 -0.0152 1.0276 29 1 -0.3634 0.8975 -0.5007 30 1 -0.3633 -0.8823 -0.5269 31 1 1.6584 2.1313 0.0008 32 1 4.1193 2.1331 -0.0001 33 1 5.3558 0.0048 -0.0005 34 1 4.1333 -2.1311 0.0084 35 1 2.4883 -3.5405 -1.5983 36 1 1.0705 -5.7705 -2.1200 37 1 -0.3665 -6.0691 -1.1130 38 1 4.7050 -6.8998 -3.1796 39 1 -0.2390 -7.1435 0.9051 40 1 1.2742 -6.3171 2.5959 41 1 2.6553 -7.2495 1.9296 42 1 0.1950 -8.3007 3.4324 43 1 1.9203 -8.6744 3.7317 44 1 2.0282 -10.1892 1.9595 45 1 0.2639 -10.2949 2.2151 46 1 1.6755 -9.2485 -0.0934 47 1 -0.0890 -9.3545 0.1613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290112965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:56 Heat of formation + Delta-G solvation = 131.927779 kcal Electronic energy + Delta-G solvation = -28070.979372 eV Core-core repulsion = 24448.877221 eV Total energy + Delta-G solvation = -3622.102151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.36322 -40.47632 -39.41896 -36.57371 -35.44815 -33.87623 -33.69556 -32.18933 -31.02675 -29.39895 -28.77179 -28.08712 -27.75819 -25.00066 -24.56872 -23.17376 -22.60703 -21.65023 -21.28327 -20.65076 -19.28317 -18.30769 -17.69322 -17.20533 -16.94798 -16.84399 -16.13448 -16.01393 -15.80014 -15.42860 -15.03604 -14.91028 -14.66186 -14.52809 -14.27948 -14.22507 -14.06487 -13.46306 -13.29653 -13.19022 -13.00421 -12.74127 -12.52919 -12.41197 -12.30951 -12.20769 -12.13917 -11.92272 -11.86048 -11.79348 -11.58497 -11.42145 -11.23515 -11.12924 -10.56865 -10.20251 -9.94761 -9.70952 -8.73098 -8.15861 -5.53850 -0.24494 0.21122 0.76892 1.31049 1.35219 1.44377 1.53405 1.56742 2.45080 2.55056 3.10128 3.37017 3.41718 3.63757 3.66578 3.90919 3.95634 4.00057 4.06113 4.07144 4.22352 4.26171 4.26601 4.40848 4.54592 4.57273 4.62385 4.64420 4.68596 4.74349 4.83456 4.84077 4.87727 4.89546 4.96455 5.08334 5.13543 5.14822 5.21187 5.25218 5.29369 5.36606 5.38262 5.49380 5.59167 5.62769 5.64471 5.97417 6.00730 6.27422 7.01407 7.46009 7.65674 8.10622 9.03311 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.004015 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.269326 B = 6972.868539 C = 7817.189770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.104 4.104 4 C -0.090 4.090 5 C -0.109 4.109 6 C -0.118 4.118 7 C 0.078 3.922 8 N -0.241 5.241 9 C -0.039 4.039 10 C -0.021 4.021 11 C 0.213 3.787 12 N -0.593 5.593 13 C -0.238 4.238 14 H 0.039 0.961 15 C -0.004 4.004 16 N -0.940 5.940 17 Si 0.918 3.082 18 H -0.271 1.271 19 H -0.309 1.309 20 H -0.255 1.255 21 C 0.169 3.831 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.134 4.134 26 N -0.281 5.281 27 N -0.096 5.096 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.036 0.964 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.116 0.884 35 H 0.186 0.814 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.262 0.738 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 14.549 4.042 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.011 4.011 8 N -0.031 5.031 9 C -0.188 4.188 10 C -0.160 4.160 11 C 0.085 3.915 12 N -0.313 5.313 13 C -0.368 4.368 14 H 0.057 0.943 15 C -0.201 4.201 16 N -0.583 5.583 17 Si 0.747 3.253 18 H -0.198 1.198 19 H -0.238 1.238 20 H -0.179 1.179 21 C 0.063 3.937 22 C -0.166 4.166 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.174 4.174 26 N -0.149 5.149 27 N -0.073 5.073 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.176 0.824 34 H 0.134 0.866 35 H 0.203 0.797 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.991 14.942 5.075 16.879 hybrid contribution 0.970 -0.950 -1.753 2.217 sum -5.021 13.992 3.322 15.232 Atomic orbital electron populations 1.20777 0.89771 1.02800 1.03187 1.20110 0.97370 0.91335 0.98565 1.21400 0.94826 0.96946 0.99053 1.21796 0.94066 0.99313 0.95571 1.21394 1.01735 0.90675 0.98921 1.21263 0.91244 1.00861 1.00469 1.17911 0.91308 0.81963 1.09956 1.44625 1.23501 1.12013 1.22927 1.23713 1.05141 0.88325 1.01604 1.23264 0.95911 0.99134 0.97680 1.19674 0.96621 0.81788 0.93428 1.44248 1.09876 1.41003 1.36186 1.18339 0.83999 1.43619 0.90814 0.94329 1.25888 0.96446 0.98602 0.99136 1.69996 1.18081 1.51495 1.18761 0.86233 0.80776 0.78702 0.79613 1.19787 1.23760 1.17876 1.21524 0.94609 0.91032 0.86503 1.22747 0.99609 0.97332 0.96926 1.22239 1.01508 0.94142 0.97122 1.22009 1.01559 0.97469 0.93944 1.22488 1.00970 0.96220 0.97675 1.74892 1.23800 1.01580 1.14648 1.78165 1.02883 1.10876 1.15412 0.90251 0.88163 0.94478 0.81342 0.81031 0.82353 0.86556 0.79656 0.92064 0.90421 0.92844 0.91082 0.94105 0.94151 0.90451 0.91607 0.92794 0.90100 0.93226 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.01 71.24 0.64 -1.83 16 2 C -0.07 -1.72 5.89 -19.75 -0.12 -1.84 16 3 C -0.10 -1.65 9.69 22.25 0.22 -1.43 16 4 C -0.09 -1.24 10.04 22.29 0.22 -1.02 16 5 C -0.11 -2.03 10.04 22.25 0.22 -1.81 16 6 C -0.12 -3.23 9.65 22.38 0.22 -3.02 16 7 C 0.08 2.38 6.17 38.07 0.23 2.62 16 8 N -0.24 -9.04 2.91 -187.05 -0.54 -9.58 16 9 C -0.04 -1.60 11.25 83.37 0.94 -0.66 16 10 C -0.02 -0.90 6.83 41.60 0.28 -0.61 16 11 C 0.21 9.33 5.06 85.63 0.43 9.77 16 12 N -0.59 -27.85 2.07 -675.72 -1.40 -29.25 16 13 C -0.24 -12.97 8.29 84.03 0.70 -12.27 16 14 H 0.04 2.40 6.71 -2.91 -0.02 2.38 16 15 C 0.00 -0.20 5.27 84.86 0.45 0.25 16 16 N -0.94 -55.93 13.97 21.65 0.30 -55.63 16 17 Si 0.92 43.74 25.24 68.60 1.73 45.47 16 18 H -0.27 -12.19 6.61 99.48 0.66 -11.53 16 19 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 20 H -0.25 -11.68 7.11 99.48 0.71 -10.98 16 21 C 0.17 6.93 3.39 46.19 0.16 7.09 16 22 C -0.13 -5.07 6.45 32.01 0.21 -4.86 16 23 C -0.11 -3.48 6.82 31.67 0.22 -3.26 16 24 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 25 C -0.13 -5.06 6.42 31.32 0.20 -4.86 16 26 N -0.28 -12.12 12.39 -48.59 -0.60 -12.72 16 27 N -0.10 -3.86 11.39 37.02 0.42 -3.44 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 30 H 0.04 1.06 6.93 -2.39 -0.02 1.04 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.12 3.59 8.05 -2.91 -0.02 3.57 16 35 H 0.19 7.48 8.06 -2.91 -0.02 7.45 16 36 H 0.06 2.79 3.47 -2.39 -0.01 2.78 16 37 H 0.08 3.08 7.95 -2.39 -0.02 3.06 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.07 2.76 7.86 -2.39 -0.02 2.74 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.04 1.86 6.45 -2.39 -0.02 1.85 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 2.19 7.04 -2.39 -0.02 2.18 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.85 375.96 6.25 -62.59 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.91 Total: 23.55 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 5.43 Total: -21.00 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -1.82 Total: -110.62 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.73 Total: 45.47 kcal Total: -68.85 6.25 -62.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290112965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.523 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds