Wall clock time and date at job start Tue Mar 31 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37983 * 120.07263 * 2 1 4 4 C 1.38333 * 120.14611 * 180.25190 * 3 2 1 5 5 C 1.38389 * 120.28934 * 359.74037 * 4 3 2 6 6 C 1.37940 * 120.13874 * 359.97438 * 5 4 3 7 7 C 1.39541 * 120.07309 * 179.73560 * 2 1 3 8 8 C 1.47854 * 120.14370 * 0.03035 * 7 2 1 9 9 N 1.31257 * 126.46960 * 310.97877 * 8 7 2 10 10 N 1.28517 * 109.92991 * 180.25812 * 9 8 7 11 11 C 1.31378 * 110.08057 * 359.73775 * 10 9 8 12 12 N 1.38411 * 126.36546 * 179.97438 * 11 10 9 13 13 C 1.46908 * 110.99492 * 124.00200 * 12 11 10 14 14 C 1.50697 * 109.46929 * 304.01987 * 13 12 11 15 15 H 1.07992 * 120.00422 * 4.76909 * 14 13 12 16 16 C 1.37882 * 119.99815 * 184.77863 * 14 13 12 17 17 N 1.31515 * 119.99967 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47244 * 59.99090 * 18 16 14 20 20 H 1.48492 * 109.47302 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46934 * 299.99487 * 18 16 14 22 22 C 1.46894 * 111.00474 * 0.04883 * 12 11 10 23 23 C 1.52992 * 109.47228 * 195.40834 * 22 12 11 24 24 C 1.53001 * 117.50132 * 245.93183 * 23 22 12 25 25 C 1.52998 * 117.50051 * 177.27186 * 23 22 12 26 26 N 1.36466 * 107.25813 * 0.02562 * 11 10 9 27 27 C 1.46504 * 127.16340 * 179.97438 * 26 11 10 28 28 H 1.09001 * 109.47426 * 270.26201 * 1 2 3 29 29 H 1.09002 * 109.47064 * 30.25899 * 1 2 3 30 30 H 1.08998 * 109.47220 * 150.26145 * 1 2 3 31 31 H 1.08004 * 119.92863 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.85989 * 179.72109 * 4 3 2 33 33 H 1.07995 * 119.92567 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.06825 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47228 * 64.01836 * 13 12 11 36 36 H 1.08992 * 109.46910 * 184.01853 * 13 12 11 37 37 H 0.96993 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.46856 * 315.41119 * 22 12 11 39 39 H 1.09004 * 109.47172 * 75.40552 * 22 12 11 40 40 H 1.09000 * 115.54942 * 31.59717 * 23 22 12 41 41 H 1.09008 * 117.49741 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50410 * 145.01865 * 24 23 22 43 43 H 1.09004 * 117.50219 * 214.97853 * 25 23 22 44 44 H 1.09000 * 117.49798 * 359.97438 * 25 23 22 45 45 H 1.09005 * 109.46558 * 85.01635 * 27 26 11 46 46 H 1.08994 * 109.46769 * 205.01617 * 27 26 11 47 47 H 1.08999 * 109.47124 * 325.02131 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0053 5 6 4.2813 0.0018 -0.0051 6 6 3.6021 -1.1988 0.0008 7 6 2.2062 -1.2076 0.0056 8 6 1.4718 -2.4908 0.0108 9 7 0.4831 -2.8206 0.8087 10 7 0.0831 -4.0123 0.5410 11 6 0.7884 -4.5134 -0.4476 12 7 0.6412 -5.7716 -1.0054 13 6 0.4077 -5.6816 -2.4530 14 6 -0.7910 -4.8067 -2.7150 15 1 -1.2793 -4.3001 -1.8957 16 6 -1.2645 -4.6531 -4.0008 17 7 -0.6697 -5.2697 -4.9987 18 14 -2.7508 -3.5692 -4.3256 19 1 -2.4583 -2.1822 -3.8829 20 1 -3.0563 -3.5705 -5.7788 21 1 -3.9192 -4.0929 -3.5733 22 6 -0.4372 -6.5180 -0.3437 23 6 -0.3259 -8.0010 -0.7030 24 6 -1.4504 -8.6109 -1.5423 25 6 -1.3268 -8.9613 -0.0574 26 7 1.6937 -3.5633 -0.8215 27 6 2.6969 -3.6662 -1.8842 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6584 2.1294 -0.0004 32 1 4.1182 2.1332 -0.0098 33 1 5.3612 0.0100 -0.0088 34 1 4.1491 -2.1300 0.0004 35 1 1.2846 -5.2507 -2.9364 36 1 0.2247 -6.6783 -2.8542 37 1 -1.0026 -5.1614 -5.9032 38 1 -0.3521 -6.3984 0.7363 39 1 -1.4018 -6.1348 -0.6768 40 1 0.6859 -8.3686 -0.8741 41 1 -2.2698 -7.9556 -1.8382 42 1 -1.1785 -9.3800 -2.2653 43 1 -0.9736 -9.9610 0.1960 44 1 -2.0643 -8.5367 0.6236 45 1 2.2440 -3.3971 -2.8385 46 1 3.5234 -2.9886 -1.6704 47 1 3.0693 -4.6893 -1.9344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290485795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:17 Heat of formation + Delta-G solvation = 136.877693 kcal Electronic energy + Delta-G solvation = -28330.219666 eV Core-core repulsion = 24708.332160 eV Total energy + Delta-G solvation = -3621.887507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23471 -39.17028 -37.86161 -35.65223 -34.30219 -32.93966 -32.61107 -31.49688 -28.55917 -27.62591 -27.15187 -26.69361 -25.34292 -23.34469 -22.41710 -21.87142 -21.79790 -20.46219 -20.05417 -19.37664 -17.09669 -16.71643 -16.03380 -15.90676 -15.64900 -15.20468 -14.96204 -14.79398 -14.46787 -13.83530 -13.70941 -13.59276 -13.23579 -13.12152 -12.90908 -12.69953 -12.49750 -12.00982 -11.93231 -11.88681 -11.41132 -11.34652 -11.19793 -11.07067 -11.05343 -10.92113 -10.71447 -10.60010 -10.30699 -10.08891 -9.86899 -9.78309 -9.54175 -9.31403 -9.27888 -8.76626 -8.60328 -8.46208 -7.30065 -6.22664 -4.30608 1.10955 1.37532 2.46041 2.93792 3.21241 3.25287 3.30789 3.49501 3.81491 4.23961 4.29185 4.53325 4.65517 4.86636 4.89129 4.98344 5.06733 5.11908 5.29973 5.32104 5.42156 5.46490 5.49793 5.55407 5.71515 5.75624 5.85150 5.87108 5.90523 5.94909 5.99462 6.01324 6.09584 6.26732 6.36023 6.37145 6.43067 6.44178 6.48480 6.61948 6.63540 6.69387 6.86198 6.90334 7.00254 7.20472 7.25427 7.55921 7.70628 7.94861 8.10271 8.76115 9.36775 9.43429 10.83336 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.004432 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.890169 B = 6316.470677 C = 7434.592530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.122 4.122 4 C -0.112 4.112 5 C -0.127 4.127 6 C -0.102 4.102 7 C 0.003 3.997 8 C 0.180 3.820 9 N -0.263 5.263 10 N -0.347 5.347 11 C 0.425 3.575 12 N -0.462 5.462 13 C 0.185 3.815 14 C -0.551 4.551 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.107 3.893 23 C -0.136 4.136 24 C -0.170 4.170 25 C -0.185 4.185 26 N -0.471 5.471 27 C 0.081 3.919 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 5.442 6.602 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.145 4.145 6 C -0.121 4.121 7 C 0.001 3.999 8 C -0.085 4.085 9 N -0.104 5.104 10 N -0.194 5.194 11 C 0.069 3.931 12 N -0.184 5.184 13 C 0.061 3.939 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.020 4.020 23 C -0.155 4.155 24 C -0.207 4.207 25 C -0.222 4.222 26 N -0.165 5.165 27 C -0.062 4.062 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.754 5.156 7.500 11.957 hybrid contribution -0.404 0.743 -1.703 1.901 sum 7.350 5.899 5.797 11.065 Atomic orbital electron populations 1.20819 0.90357 1.02822 1.03058 1.19984 0.96648 0.91508 0.96442 1.20954 0.94194 0.97224 1.01606 1.21191 0.94196 0.98019 0.99626 1.20961 0.99765 0.92064 1.01718 1.21184 0.92732 0.98465 0.99752 1.17349 0.91720 0.88035 1.02822 1.22160 1.00891 0.89999 0.95452 1.74190 1.08322 1.06926 1.20959 1.74589 1.22710 1.03798 1.18263 1.22551 0.88218 0.88547 0.93801 1.59165 1.43854 1.06862 1.08537 1.20124 0.96656 0.99353 0.77737 1.21614 1.14315 1.29431 0.93648 0.92199 1.24854 0.96786 0.95419 0.95987 1.69905 1.40502 1.42209 0.99813 0.86695 0.83351 0.81232 0.77164 1.20222 1.21034 1.19921 1.21449 0.93016 0.89668 0.97875 1.22130 0.95516 0.93626 1.04212 1.22994 1.01681 1.03279 0.92753 1.22939 1.03073 0.99601 0.96628 1.45799 1.29293 1.12713 1.28698 1.22104 0.90202 1.04025 0.89896 0.90269 0.91980 0.90901 0.85675 0.85993 0.85821 0.85983 0.94814 0.92447 0.92524 0.90580 0.91644 0.87766 0.88416 0.89382 0.89361 0.89114 0.89549 0.90191 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.19 36.00 0.33 -1.40 16 2 C -0.04 -0.65 5.91 -104.23 -0.62 -1.27 16 3 C -0.12 -1.44 9.69 -39.64 -0.38 -1.83 16 4 C -0.11 -1.17 10.04 -39.49 -0.40 -1.56 16 5 C -0.13 -1.37 10.03 -39.63 -0.40 -1.76 16 6 C -0.10 -1.33 8.49 -39.19 -0.33 -1.66 16 7 C 0.00 0.05 5.67 -104.97 -0.60 -0.54 16 8 C 0.18 3.48 6.36 -153.78 -0.98 2.50 16 9 N -0.26 -5.70 11.13 32.59 0.36 -5.34 16 10 N -0.35 -7.94 11.01 30.31 0.33 -7.61 16 11 C 0.42 9.23 5.75 -318.90 -1.83 7.40 16 12 N -0.46 -9.74 4.73 -175.89 -0.83 -10.57 16 13 C 0.19 4.35 4.81 -4.97 -0.02 4.32 16 14 C -0.55 -14.46 7.54 -34.44 -0.26 -14.72 16 15 H 0.06 1.69 6.83 -52.49 -0.36 1.33 16 16 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 17 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.11 2.12 4.69 -3.83 -0.02 2.10 16 23 C -0.14 -2.31 4.99 -90.62 -0.45 -2.77 16 24 C -0.17 -2.80 10.12 -26.69 -0.27 -3.07 16 25 C -0.18 -2.65 10.25 -26.70 -0.27 -2.93 16 26 N -0.47 -9.20 3.23 -122.06 -0.39 -9.59 16 27 C 0.08 1.29 9.38 59.85 0.56 1.85 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.07 1.36 6.73 -51.93 -0.35 1.01 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.45 7.11 -52.49 -0.37 1.08 16 35 H 0.03 0.81 5.55 -51.93 -0.29 0.52 16 36 H 0.06 1.43 7.23 -51.93 -0.38 1.05 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 39 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 40 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.10 1.78 8.04 -51.92 -0.42 1.36 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 46 H 0.08 1.02 5.66 -51.93 -0.29 0.72 16 47 H 0.09 1.35 7.78 -51.93 -0.40 0.95 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -30.15 380.65 -12.05 -42.20 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.93 Total: 5.92 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -6.04 Total: -13.48 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.21 Total: -56.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.15 -12.05 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290485795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.075 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds