Wall clock time and date at job start Tue Mar 31 2020 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37983 * 120.07263 * 2 1 4 4 C 1.38333 * 120.14611 * 180.25190 * 3 2 1 5 5 C 1.38389 * 120.28934 * 359.74037 * 4 3 2 6 6 C 1.37940 * 120.13874 * 359.97438 * 5 4 3 7 7 C 1.39541 * 120.07309 * 179.73560 * 2 1 3 8 8 C 1.47854 * 120.14370 * 0.03035 * 7 2 1 9 9 N 1.31257 * 126.46960 * 310.97877 * 8 7 2 10 10 N 1.28517 * 109.92991 * 180.25812 * 9 8 7 11 11 C 1.31378 * 110.08057 * 359.73775 * 10 9 8 12 12 N 1.38411 * 126.36546 * 179.97438 * 11 10 9 13 13 C 1.46908 * 110.99492 * 124.00200 * 12 11 10 14 14 C 1.50697 * 109.46929 * 304.01987 * 13 12 11 15 15 H 1.07992 * 120.00422 * 4.76909 * 14 13 12 16 16 C 1.37882 * 119.99815 * 184.77863 * 14 13 12 17 17 N 1.31515 * 119.99967 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47244 * 59.99090 * 18 16 14 20 20 H 1.48492 * 109.47302 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46934 * 299.99487 * 18 16 14 22 22 C 1.46894 * 111.00474 * 0.04883 * 12 11 10 23 23 C 1.52992 * 109.47228 * 195.40834 * 22 12 11 24 24 C 1.53001 * 117.50132 * 245.93183 * 23 22 12 25 25 C 1.52998 * 117.50051 * 177.27186 * 23 22 12 26 26 N 1.36466 * 107.25813 * 0.02562 * 11 10 9 27 27 C 1.46504 * 127.16340 * 179.97438 * 26 11 10 28 28 H 1.09001 * 109.47426 * 270.26201 * 1 2 3 29 29 H 1.09002 * 109.47064 * 30.25899 * 1 2 3 30 30 H 1.08998 * 109.47220 * 150.26145 * 1 2 3 31 31 H 1.08004 * 119.92863 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.85989 * 179.72109 * 4 3 2 33 33 H 1.07995 * 119.92567 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.06825 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47228 * 64.01836 * 13 12 11 36 36 H 1.08992 * 109.46910 * 184.01853 * 13 12 11 37 37 H 0.96993 * 120.00048 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.46856 * 315.41119 * 22 12 11 39 39 H 1.09004 * 109.47172 * 75.40552 * 22 12 11 40 40 H 1.09000 * 115.54942 * 31.59717 * 23 22 12 41 41 H 1.09008 * 117.49741 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50410 * 145.01865 * 24 23 22 43 43 H 1.09004 * 117.50219 * 214.97853 * 25 23 22 44 44 H 1.09000 * 117.49798 * 359.97438 * 25 23 22 45 45 H 1.09005 * 109.46558 * 85.01635 * 27 26 11 46 46 H 1.08994 * 109.46769 * 205.01617 * 27 26 11 47 47 H 1.08999 * 109.47124 * 325.02131 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0053 5 6 4.2813 0.0018 -0.0051 6 6 3.6021 -1.1988 0.0008 7 6 2.2062 -1.2076 0.0056 8 6 1.4718 -2.4908 0.0108 9 7 0.4831 -2.8206 0.8087 10 7 0.0831 -4.0123 0.5410 11 6 0.7884 -4.5134 -0.4476 12 7 0.6412 -5.7716 -1.0054 13 6 0.4077 -5.6816 -2.4530 14 6 -0.7910 -4.8067 -2.7150 15 1 -1.2793 -4.3001 -1.8957 16 6 -1.2645 -4.6531 -4.0008 17 7 -0.6697 -5.2697 -4.9987 18 14 -2.7508 -3.5692 -4.3256 19 1 -2.4583 -2.1822 -3.8829 20 1 -3.0563 -3.5705 -5.7788 21 1 -3.9192 -4.0929 -3.5733 22 6 -0.4372 -6.5180 -0.3437 23 6 -0.3259 -8.0010 -0.7030 24 6 -1.4504 -8.6109 -1.5423 25 6 -1.3268 -8.9613 -0.0574 26 7 1.6937 -3.5633 -0.8215 27 6 2.6969 -3.6662 -1.8842 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6584 2.1294 -0.0004 32 1 4.1182 2.1332 -0.0098 33 1 5.3612 0.0100 -0.0088 34 1 4.1491 -2.1300 0.0004 35 1 1.2846 -5.2507 -2.9364 36 1 0.2247 -6.6783 -2.8542 37 1 -1.0026 -5.1614 -5.9032 38 1 -0.3521 -6.3984 0.7363 39 1 -1.4018 -6.1348 -0.6768 40 1 0.6859 -8.3686 -0.8741 41 1 -2.2698 -7.9556 -1.8382 42 1 -1.1785 -9.3800 -2.2653 43 1 -0.9736 -9.9610 0.1960 44 1 -2.0643 -8.5367 0.6236 45 1 2.2440 -3.3971 -2.8385 46 1 3.5234 -2.9886 -1.6704 47 1 3.0693 -4.6893 -1.9344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290485795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:16 Heat of formation + Delta-G solvation = 122.662728 kcal Electronic energy + Delta-G solvation = -28330.836074 eV Core-core repulsion = 24708.332160 eV Total energy + Delta-G solvation = -3622.503914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.80958 -40.20530 -39.39193 -37.15856 -35.79901 -34.74369 -33.90053 -32.63315 -30.14815 -29.29174 -28.59069 -27.83224 -27.10520 -24.81526 -23.97094 -23.14552 -22.93376 -21.82699 -21.48913 -20.86029 -18.86386 -18.21424 -17.55974 -17.26314 -17.06759 -16.74459 -16.23520 -16.20960 -15.97968 -15.35033 -14.96139 -14.78960 -14.63597 -14.48246 -14.24067 -14.11450 -13.91429 -13.56194 -13.24980 -13.21291 -13.14184 -12.96780 -12.73286 -12.47472 -12.45104 -12.31382 -12.18073 -12.09963 -12.05479 -11.94883 -11.40281 -11.19022 -11.04248 -10.89943 -10.73142 -10.66951 -9.85043 -9.63611 -8.96414 -8.29951 -6.43554 0.03812 0.42873 0.92963 1.24806 1.26770 1.34684 1.51603 1.89015 2.27064 2.79936 2.85273 2.99408 3.10053 3.31688 3.74582 3.88969 3.90356 3.94735 4.03195 4.09636 4.15789 4.24235 4.26166 4.35266 4.39679 4.53662 4.56048 4.59673 4.69595 4.72680 4.81168 4.82719 4.84894 4.88802 5.00471 5.04838 5.08434 5.15440 5.19780 5.25506 5.32968 5.37297 5.43150 5.54272 5.58720 5.60840 5.67203 5.84468 5.96470 6.03260 6.39999 6.67135 7.25348 7.81427 8.73786 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.004432 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.890169 B = 6316.470677 C = 7434.592530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.065 4.065 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.036 4.036 8 C 0.201 3.799 9 N -0.300 5.300 10 N -0.374 5.374 11 C 0.402 3.598 12 N -0.452 5.452 13 C 0.203 3.797 14 C -0.552 4.552 15 H 0.033 0.967 16 C 0.037 3.963 17 N -0.905 5.905 18 Si 0.934 3.066 19 H -0.284 1.284 20 H -0.270 1.270 21 H -0.276 1.276 22 C 0.115 3.885 23 C -0.151 4.151 24 C -0.180 4.180 25 C -0.152 4.152 26 N -0.475 5.475 27 C 0.080 3.920 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.269 0.731 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.690 6.999 6.751 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.136 4.136 6 C -0.124 4.124 7 C -0.038 4.038 8 C -0.065 4.065 9 N -0.140 5.140 10 N -0.220 5.220 11 C 0.045 3.955 12 N -0.175 5.175 13 C 0.079 3.921 14 C -0.591 4.591 15 H 0.052 0.948 16 C -0.165 4.165 17 N -0.544 5.544 18 Si 0.761 3.239 19 H -0.210 1.210 20 H -0.194 1.194 21 H -0.202 1.202 22 C -0.012 4.012 23 C -0.170 4.170 24 C -0.218 4.218 25 C -0.189 4.189 26 N -0.169 5.169 27 C -0.062 4.062 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.149 0.851 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.134 0.866 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.072 6.715 7.655 14.323 hybrid contribution -1.045 0.437 -1.697 2.041 sum 9.027 7.151 5.958 12.967 Atomic orbital electron populations 1.20715 0.91616 1.01557 1.02534 1.20074 0.96107 0.92492 0.98005 1.21258 0.95231 0.96806 1.00547 1.21694 0.93595 0.99601 0.96709 1.21401 1.01558 0.91038 0.99590 1.21350 0.91333 1.00188 0.99504 1.17557 0.93095 0.86669 1.06518 1.22909 0.99397 0.90716 0.93509 1.74108 1.10255 1.06705 1.22898 1.74465 1.23643 1.04665 1.19254 1.22666 0.89138 0.89227 0.94442 1.59201 1.44107 1.06955 1.07218 1.19777 0.95293 0.97718 0.79333 1.21622 1.15031 1.29537 0.92932 0.94849 1.25376 0.98731 0.96442 0.95936 1.69952 1.41404 1.42976 1.00039 0.85980 0.80928 0.79393 0.77649 1.20988 1.19425 1.20165 1.21360 0.90993 0.91357 0.97468 1.22078 0.96422 0.92192 1.06264 1.22953 1.00656 1.03378 0.94771 1.23045 1.01027 1.00079 0.94764 1.46078 1.29358 1.12312 1.29124 1.22273 0.90219 1.05532 0.88154 0.90619 0.89730 0.95428 0.83192 0.82083 0.82220 0.85139 0.95143 0.93769 0.92208 0.90781 0.95007 0.87062 0.90971 0.88127 0.86215 0.88736 0.91380 0.86576 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.37 9.19 71.24 0.65 -2.72 16 2 C -0.06 -1.87 5.91 -19.61 -0.12 -1.99 16 3 C -0.12 -2.47 9.69 22.23 0.22 -2.25 16 4 C -0.10 -1.56 10.04 22.33 0.22 -1.33 16 5 C -0.12 -2.01 10.03 22.23 0.22 -1.78 16 6 C -0.10 -2.47 8.49 22.52 0.19 -2.28 16 7 C -0.04 -1.13 5.67 -20.09 -0.11 -1.24 16 8 C 0.20 8.04 6.36 136.22 0.87 8.91 16 9 N -0.30 -13.76 11.13 -50.80 -0.57 -14.32 16 10 N -0.37 -18.22 11.01 -58.02 -0.64 -18.86 16 11 C 0.40 18.39 5.75 260.12 1.50 19.88 16 12 N -0.45 -19.98 4.73 -710.40 -3.36 -23.34 16 13 C 0.20 9.97 4.81 85.55 0.41 10.38 16 14 C -0.55 -30.33 7.54 25.60 0.19 -30.14 16 15 H 0.03 2.00 6.83 -2.91 -0.02 1.98 16 16 C 0.04 2.03 5.46 84.66 0.46 2.49 16 17 N -0.91 -50.31 13.29 21.45 0.28 -50.02 16 18 Si 0.93 44.75 29.54 68.60 2.03 46.77 16 19 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 C 0.12 4.81 4.69 86.30 0.40 5.22 16 23 C -0.15 -5.19 4.99 -10.80 -0.05 -5.25 16 24 C -0.18 -6.02 10.12 30.62 0.31 -5.71 16 25 C -0.15 -4.18 10.25 30.62 0.31 -3.86 16 26 N -0.48 -19.18 3.23 -540.09 -1.74 -20.93 16 27 C 0.08 2.57 9.38 127.77 1.20 3.76 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 30 H 0.03 1.09 6.73 -2.39 -0.02 1.07 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.13 2.78 7.11 -2.91 -0.02 2.76 16 35 H 0.03 1.51 5.55 -2.39 -0.01 1.50 16 36 H 0.04 2.28 7.23 -2.39 -0.02 2.26 16 37 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.07 3.07 7.52 -2.39 -0.02 3.05 16 39 H 0.03 1.52 6.61 -2.38 -0.02 1.50 16 40 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 41 H 0.07 2.76 8.04 -2.38 -0.02 2.75 16 42 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.07 2.44 7.69 -2.38 -0.02 2.42 16 46 H 0.12 2.80 5.66 -2.39 -0.01 2.78 16 47 H 0.10 2.94 7.78 -2.39 -0.02 2.92 16 Total: -1.00 -69.75 380.65 3.86 -65.90 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.97 Total: 22.72 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 6.88 Total: -7.92 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -6.02 Total: -127.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.75 3.86 -65.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290485795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.558 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds