Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36423 * 120.24992 * 2 1 4 4 C 1.39163 * 120.89504 * 180.24232 * 3 2 1 5 5 C 1.36346 * 121.02305 * 359.46842 * 4 3 2 6 6 C 1.40102 * 119.58598 * 0.26355 * 5 4 3 7 7 N 1.34157 * 121.98541 * 180.02562 * 6 5 4 8 8 C 1.31169 * 120.46063 * 179.97438 * 7 6 5 9 9 N 1.32370 * 122.97656 * 0.02562 * 8 7 6 10 10 C 1.32621 * 121.49790 * 359.97438 * 9 8 7 11 11 N 1.37838 * 120.91422 * 179.97438 * 10 9 8 12 12 C 1.46500 * 120.00048 * 353.98637 * 11 10 9 13 13 C 1.52997 * 109.47319 * 179.97438 * 12 11 10 14 14 C 1.53039 * 109.46027 * 295.06876 * 13 12 11 15 15 C 1.53194 * 109.31252 * 178.61185 * 14 13 12 16 16 N 1.46928 * 108.77514 * 54.63957 * 15 14 13 17 17 C 1.36936 * 120.63661 * 126.40999 * 16 15 14 18 18 H 1.08001 * 119.99980 * 326.38921 * 17 16 15 19 19 C 1.38813 * 119.99934 * 146.37791 * 17 16 15 20 20 N 1.31614 * 120.00134 * 359.17800 * 19 17 16 21 21 Si 1.86807 * 119.99675 * 179.17923 * 19 17 16 22 22 H 1.48496 * 109.47179 * 90.00015 * 21 19 17 23 23 H 1.48501 * 109.47033 * 210.00142 * 21 19 17 24 24 H 1.48503 * 109.46963 * 330.00147 * 21 19 17 25 25 C 1.46925 * 118.73659 * 306.38772 * 16 15 14 26 26 C 1.53045 * 109.46287 * 175.00114 * 13 12 11 27 27 C 1.39881 * 120.24685 * 179.72358 * 2 1 3 28 28 H 1.08993 * 109.46863 * 245.05325 * 1 2 3 29 29 H 1.08998 * 109.46781 * 5.05336 * 1 2 3 30 30 H 1.08999 * 109.46766 * 125.05335 * 1 2 3 31 31 H 1.07999 * 119.55118 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.48503 * 179.75512 * 4 3 2 33 33 H 1.08003 * 120.20506 * 180.27738 * 5 4 3 34 34 H 1.08000 * 118.50966 * 180.02562 * 8 7 6 35 35 H 0.97003 * 120.00282 * 173.98726 * 11 10 9 36 36 H 1.08997 * 109.47465 * 300.00165 * 12 11 10 37 37 H 1.09004 * 109.47326 * 59.99760 * 12 11 10 38 38 H 1.08994 * 109.46161 * 55.02804 * 13 12 11 39 39 H 1.09003 * 109.49727 * 298.56381 * 14 13 12 40 40 H 1.08999 * 109.49868 * 58.66452 * 14 13 12 41 41 H 1.08995 * 109.58940 * 294.84665 * 15 14 13 42 42 H 1.09004 * 109.70368 * 174.49198 * 15 14 13 43 43 H 0.97005 * 119.99998 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.59239 * 293.82705 * 25 16 15 45 45 H 1.09002 * 109.70948 * 173.46731 * 25 16 15 46 46 H 1.09004 * 109.49326 * 301.34095 * 26 13 12 47 47 H 1.08998 * 109.49819 * 61.40034 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1785 0.0000 4 6 3.5859 1.1941 -0.0051 5 6 4.3017 0.0337 0.0007 6 6 3.6280 -1.1946 0.0063 7 7 4.2839 -2.3649 0.0126 8 6 3.6227 -3.4977 0.0182 9 7 2.3005 -3.5603 0.0175 10 6 1.5550 -2.4635 0.0115 11 7 0.1789 -2.5426 0.0104 12 6 -0.4799 -3.8449 -0.1171 13 6 -1.9976 -3.6537 -0.0898 14 6 -2.4193 -3.1173 1.2801 15 6 -3.9349 -2.8943 1.2922 16 7 -4.6000 -4.1453 0.9032 17 6 -5.5709 -4.6955 1.6969 18 1 -5.5101 -4.5978 2.7708 19 6 -6.6334 -5.3785 1.1212 20 7 -6.7163 -5.4834 -0.1881 21 14 -7.9457 -6.1487 2.2049 22 1 -9.0313 -5.1639 2.4435 23 1 -8.5044 -7.3475 1.5297 24 1 -7.3445 -6.5468 3.5032 25 6 -4.2041 -4.7947 -0.3538 26 6 -2.6855 -4.9963 -0.3476 27 6 2.2117 -1.2084 0.0058 28 1 -0.3633 -0.4334 0.9317 29 1 -0.3633 1.0237 -0.0905 30 1 -0.3633 -0.5902 -0.8413 31 1 1.6511 2.1119 -0.0004 32 1 4.1068 2.1402 -0.0090 33 1 5.3814 0.0613 0.0012 34 1 4.1825 -4.4213 0.0236 35 1 -0.3535 -1.7360 0.0940 36 1 -0.1887 -4.3087 -1.0596 37 1 -0.1799 -4.4866 0.7114 38 1 -2.2880 -2.9426 -0.8630 39 1 -2.1516 -3.8393 2.0516 40 1 -1.9111 -2.1726 1.4731 41 1 -4.1941 -2.1072 0.5843 42 1 -4.2559 -2.6058 2.2932 43 1 -7.4586 -5.9611 -0.5904 44 1 -4.4851 -4.1624 -1.1961 45 1 -4.7006 -5.7611 -0.4407 46 1 -2.3665 -5.3889 -1.3132 47 1 -2.4148 -5.7007 0.4389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301602760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = 84.478930 kcal Electronic energy + Delta-G solvation = -27476.997497 eV Core-core repulsion = 23852.837809 eV Total energy + Delta-G solvation = -3624.159688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.40380 -39.79575 -38.74223 -37.93456 -35.48231 -33.76586 -33.14495 -32.52683 -31.64623 -31.05020 -28.50508 -28.06875 -25.99634 -25.35322 -24.29657 -23.71569 -22.55493 -22.28223 -20.72877 -19.47967 -18.80620 -18.74151 -18.02718 -17.16836 -16.80801 -16.49244 -16.07804 -15.73797 -15.40701 -15.27139 -15.16229 -14.88915 -14.85828 -14.52156 -14.48847 -14.04341 -13.92430 -13.77900 -13.28929 -13.18766 -13.04660 -12.87711 -12.74463 -12.61240 -12.34593 -12.22179 -12.14653 -11.95665 -11.85537 -11.60777 -11.49356 -11.21833 -11.10708 -10.54145 -10.40780 -10.11429 -9.95032 -8.69133 -8.56729 -7.85090 -5.40035 -0.49371 -0.16195 0.96165 1.46799 1.47184 1.56211 1.98753 2.11592 2.50053 3.15145 3.27184 3.30557 3.37720 3.51325 3.69269 3.71820 3.83151 3.85558 3.93293 4.06478 4.20613 4.28786 4.40604 4.44225 4.50329 4.53175 4.53993 4.67850 4.72546 4.77205 4.83698 4.94412 4.97022 5.01342 5.10032 5.12465 5.27429 5.28644 5.31213 5.34786 5.42019 5.46236 5.59387 5.66640 5.71374 5.84526 5.88683 6.06922 6.45907 6.56134 7.18930 7.37860 7.88390 8.40184 9.18516 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.002524 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.141924 B =11091.564676 C =11726.923914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.139 4.139 4 C -0.058 4.058 5 C -0.139 4.139 6 C 0.163 3.837 7 N -0.582 5.582 8 C 0.338 3.662 9 N -0.622 5.622 10 C 0.462 3.538 11 N -0.693 5.693 12 C 0.138 3.862 13 C -0.080 4.080 14 C -0.115 4.115 15 C 0.141 3.859 16 N -0.613 5.613 17 C -0.263 4.263 18 H 0.063 0.937 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.174 3.826 26 C -0.121 4.121 27 C -0.217 4.217 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.215 0.785 35 H 0.425 0.575 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.250 0.750 44 H -0.004 1.004 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.713 14.117 -0.896 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 C -0.158 4.158 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.038 3.962 7 N -0.303 5.303 8 C 0.048 3.952 9 N -0.352 5.352 10 C 0.207 3.793 11 N -0.337 5.337 12 C 0.014 3.986 13 C -0.099 4.099 14 C -0.154 4.154 15 C 0.015 3.985 16 N -0.337 5.337 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.049 3.951 26 C -0.161 4.161 27 C -0.225 4.225 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.231 0.769 35 H 0.279 0.721 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.014 0.986 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.045 13.121 -0.979 23.978 hybrid contribution -1.568 -0.078 0.358 1.610 sum 18.477 13.043 -0.621 22.625 Atomic orbital electron populations 1.21318 0.90182 1.06329 1.02452 1.19782 0.96582 0.91853 0.96445 1.21186 0.94638 0.98076 1.01876 1.21403 0.94158 0.98963 0.93341 1.20899 1.01213 0.89769 1.03948 1.19185 0.89039 0.94035 0.93936 1.68834 1.40038 0.98326 1.23056 1.25049 0.86183 0.97015 0.86972 1.68040 1.08734 1.30728 1.27666 1.18997 0.86459 0.88905 0.84966 1.46221 1.01563 1.12110 1.73845 1.21394 0.91001 0.84399 1.01819 1.21174 0.92422 0.98198 0.98138 1.21946 0.96574 1.00551 0.96377 1.21065 0.91722 0.87685 0.97985 1.44260 1.42860 1.23287 1.23310 1.19477 0.99679 1.30426 0.89746 0.91973 1.25978 0.99268 1.02268 0.96776 1.70084 1.31835 1.46222 1.09936 0.85273 0.79475 0.77323 0.78380 1.21080 1.21950 1.19589 1.20677 0.90717 0.97538 0.86192 1.21984 0.97069 0.96170 1.00837 1.19110 0.95732 0.94069 1.13610 0.89657 0.86818 0.89931 0.82108 0.81594 0.83725 0.76919 0.72065 0.91523 0.92035 0.90698 0.93131 0.90531 0.96158 0.92989 0.94080 0.98552 0.92011 0.91326 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.00 71.24 0.57 -1.40 16 2 C -0.04 -0.79 5.88 -19.89 -0.12 -0.91 16 3 C -0.14 -1.85 9.59 22.07 0.21 -1.64 16 4 C -0.06 -0.76 9.95 22.05 0.22 -0.54 16 5 C -0.14 -2.63 10.01 22.28 0.22 -2.41 16 6 C 0.16 4.14 6.61 40.08 0.27 4.40 16 7 N -0.58 -15.76 10.45 -193.95 -2.03 -17.78 16 8 C 0.34 8.65 12.22 180.90 2.21 10.86 16 9 N -0.62 -17.56 9.68 -196.75 -1.91 -19.47 16 10 C 0.46 12.28 7.52 134.02 1.01 13.28 16 11 N -0.69 -16.28 4.88 -343.65 -1.68 -17.96 16 12 C 0.14 3.59 5.13 86.38 0.44 4.03 16 13 C -0.08 -2.34 2.19 -10.77 -0.02 -2.36 16 14 C -0.12 -3.50 5.25 30.67 0.16 -3.34 16 15 C 0.14 5.46 6.52 86.36 0.56 6.02 16 16 N -0.61 -30.06 3.00 -699.08 -2.09 -32.15 16 17 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 18 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 19 C -0.05 -2.63 5.25 84.86 0.45 -2.19 16 20 N -0.93 -54.45 10.69 21.65 0.23 -54.22 16 21 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.17 8.22 5.25 86.36 0.45 8.67 16 26 C -0.12 -4.34 5.36 30.67 0.16 -4.17 16 27 C -0.22 -5.31 5.75 -21.20 -0.12 -5.43 16 28 H 0.09 1.16 7.03 -2.39 -0.02 1.14 16 29 H 0.11 0.90 7.87 -2.39 -0.02 0.88 16 30 H 0.08 1.21 6.59 -2.39 -0.02 1.19 16 31 H 0.16 1.07 7.92 -2.91 -0.02 1.05 16 32 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.43 8.37 1.93 -95.61 -0.18 8.18 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.80 7.11 -2.39 -0.02 1.79 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 43 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 46 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.56 367.39 2.83 -66.73 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.79 Total: 18.95 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 7.48 Total: 9.38 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -7.47 Total: -141.57 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.56 2.83 -66.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301602760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.211 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds