Wall clock time and date at job start Tue Mar 31 2020 14:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81400 * 102.99980 * 2 1 4 4 H 1.08991 * 109.18703 * 304.56791 * 3 2 1 5 5 C 1.47093 * 109.32701 * 184.99778 * 3 2 1 6 6 C 1.52562 * 114.32959 * 176.93682 * 5 3 2 7 7 C 1.50885 * 109.35884 * 85.01449 * 6 5 3 8 8 C 1.53943 * 110.09521 * 268.11977 * 7 6 5 9 9 N 1.47608 * 112.14768 * 40.55724 * 8 7 6 10 10 C 1.34773 * 118.64596 * 222.13095 * 9 8 7 11 11 O 1.21582 * 120.00015 * 4.84312 * 10 9 8 12 12 N 1.34777 * 119.99803 * 184.84168 * 10 9 8 13 13 C 1.46500 * 119.99613 * 174.87996 * 12 10 9 14 14 H 1.08998 * 110.43730 * 323.91247 * 13 12 10 15 15 C 1.54260 * 110.48724 * 86.45580 * 13 12 10 16 16 C 1.53877 * 106.59923 * 142.28669 * 15 13 12 17 17 C 1.54257 * 106.59770 * 359.97438 * 16 15 13 18 18 H 1.09000 * 110.48756 * 95.20320 * 17 16 15 19 19 C 1.50703 * 110.48639 * 217.71438 * 17 16 15 20 20 H 1.07992 * 120.00283 * 118.54698 * 19 17 16 21 21 C 1.37886 * 119.99633 * 298.54578 * 19 17 16 22 22 N 1.31515 * 120.00212 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99655 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46739 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47163 * 299.99976 * 23 21 19 26 26 H 1.48501 * 109.47227 * 60.00224 * 23 21 19 27 27 C 1.54886 * 104.19877 * 336.39145 * 17 16 15 28 28 C 1.44583 * 122.70742 * 42.41214 * 9 8 7 29 29 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47351 * 300.00304 * 1 2 3 31 31 H 1.09011 * 109.46552 * 60.00191 * 1 2 3 32 32 H 1.09000 * 108.51328 * 55.67544 * 5 3 2 33 33 H 1.09004 * 108.38941 * 298.10055 * 5 3 2 34 34 H 1.09006 * 109.48589 * 325.05739 * 6 5 3 35 35 H 1.08993 * 109.51399 * 204.99608 * 6 5 3 36 36 H 1.08991 * 109.36735 * 147.92477 * 7 6 5 37 37 H 1.08996 * 109.25854 * 28.24377 * 7 6 5 38 38 H 1.09005 * 108.94932 * 279.87299 * 8 7 6 39 39 H 1.09000 * 108.94597 * 161.24714 * 8 7 6 40 40 H 0.97001 * 120.00010 * 354.88016 * 12 10 9 41 41 H 1.08999 * 110.03228 * 22.99986 * 15 13 12 42 42 H 1.09005 * 110.03174 * 261.56902 * 15 13 12 43 43 H 1.09006 * 110.03214 * 240.71018 * 16 15 13 44 44 H 1.08997 * 110.07481 * 119.30988 * 16 15 13 45 45 H 0.96993 * 119.99970 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.75848 * 156.25753 * 27 17 16 47 47 H 1.09005 * 110.75721 * 279.62505 * 27 17 16 48 48 H 1.08999 * 109.44998 * 29.03879 * 28 9 8 49 49 H 1.09004 * 109.44484 * 148.95810 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7336 2.2479 -0.8476 5 6 3.6790 1.9308 -0.1209 6 6 4.1439 3.3813 -0.2066 7 6 4.2908 3.9425 1.1863 8 6 2.9798 4.6201 1.6246 9 7 1.7902 3.8505 1.2106 10 6 0.7294 4.5178 0.7149 11 8 0.7967 5.7181 0.5339 12 7 -0.4061 3.8544 0.4199 13 6 -1.5950 4.5934 -0.0122 14 1 -1.6651 5.5441 0.5163 15 6 -1.5624 4.8245 -1.5370 16 6 -3.0105 4.6749 -2.0354 17 6 -3.8724 4.3573 -0.7961 18 1 -4.3147 5.2693 -0.3952 19 6 -4.9473 3.3596 -1.1427 20 1 -4.9719 2.3991 -0.6496 21 6 -5.8994 3.6730 -2.0896 22 7 -5.8697 4.8428 -2.6898 23 14 -7.2322 2.4365 -2.5188 24 1 -8.1246 3.0112 -3.5575 25 1 -6.6061 1.1938 -3.0373 26 1 -8.0251 2.1215 -1.3034 27 6 -2.8718 3.7464 0.2161 28 6 1.7140 2.4108 1.3204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 4.0128 1.4068 -1.0165 33 1 4.1501 1.4670 0.7457 34 1 3.4087 3.9668 -0.7588 35 1 5.1043 3.4261 -0.7199 36 1 5.0977 4.6752 1.1975 37 1 4.5278 3.1332 1.8768 38 1 2.9299 5.6146 1.1811 39 1 2.9778 4.7180 2.7102 40 1 -0.4361 2.8876 0.4937 41 1 -0.9246 4.0803 -2.0140 42 1 -1.1943 5.8272 -1.7549 43 1 -3.0755 3.8580 -2.7542 44 1 -3.3457 5.6043 -2.4956 45 1 -6.5392 5.0632 -3.3561 46 1 -3.2352 3.8633 1.2371 47 1 -2.6852 2.6967 -0.0108 48 1 2.3360 2.0767 2.1508 49 1 0.6803 2.1148 1.4996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331424987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:39 Heat of formation + Delta-G solvation = -43.784172 kcal Electronic energy + Delta-G solvation = -27204.454030 eV Core-core repulsion = 23677.883638 eV Total energy + Delta-G solvation = -3526.570393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65770 -38.21007 -36.94091 -34.33507 -33.71566 -32.81182 -31.72989 -29.18688 -28.17590 -27.49256 -26.46723 -25.62918 -23.84696 -22.28780 -20.88527 -20.01775 -19.66079 -18.89926 -18.04898 -17.01927 -16.75066 -16.23423 -15.37958 -15.24322 -14.92546 -14.66097 -14.45723 -14.41293 -14.26379 -13.84803 -13.64216 -13.43435 -13.34250 -12.76618 -12.58394 -12.51791 -12.39788 -11.90998 -11.82386 -11.55360 -11.19034 -11.08481 -10.99087 -10.94474 -10.88702 -10.76858 -10.61737 -10.31271 -10.26068 -9.99588 -9.85762 -9.56011 -9.26490 -8.90043 -8.75639 -8.49809 -8.39718 -7.91451 -6.02344 -4.06111 1.36980 2.24766 2.75960 3.28676 3.29704 3.35388 3.36778 3.95256 4.27522 4.35981 4.42061 4.60930 4.62830 4.84228 4.89189 5.00345 5.04130 5.07520 5.29467 5.29488 5.33931 5.44034 5.47993 5.52468 5.62697 5.65450 5.74265 5.77264 5.82088 5.83620 5.85781 6.05743 6.28475 6.34444 6.41746 6.54854 6.63451 6.70876 6.86994 6.91821 6.97803 7.29028 7.32714 7.70846 7.87195 7.99837 8.05645 8.41303 8.72339 8.96043 9.57976 11.07046 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.003438 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.022661 B = 8142.655425 C = 9335.832163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.257 6.257 3 C -0.072 4.072 4 H 0.091 0.909 5 C -0.101 4.101 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.128 3.872 9 N -0.625 5.625 10 C 0.699 3.301 11 O -0.586 6.586 12 N -0.735 5.735 13 C 0.153 3.847 14 H 0.084 0.916 15 C -0.133 4.133 16 C -0.094 4.094 17 C 0.052 3.948 18 H 0.031 0.969 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.063 3.937 22 N -0.887 5.887 23 Si 0.889 3.111 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.119 4.119 28 C 0.122 3.878 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.388 0.612 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.260 0.740 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.090 0.910 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.974 -6.714 7.934 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.029 6.029 3 C -0.202 4.202 4 H 0.109 0.891 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.170 4.170 8 C 0.005 3.995 9 N -0.362 5.362 10 C 0.400 3.600 11 O -0.464 6.464 12 N -0.390 5.390 13 C 0.049 3.951 14 H 0.102 0.898 15 C -0.172 4.172 16 C -0.133 4.133 17 C 0.034 3.966 18 H 0.050 0.950 19 C -0.555 4.555 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.525 5.525 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.157 4.157 28 C -0.005 4.005 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.566 -6.610 7.677 22.926 hybrid contribution -1.658 -0.280 -0.396 1.728 sum 18.908 -6.890 7.281 21.401 Atomic orbital electron populations 1.23515 0.93301 1.07101 1.05575 1.86815 1.08188 1.10041 1.97853 1.23105 1.01165 0.93903 1.02008 0.89073 1.20215 0.92704 0.97676 1.03373 1.21017 1.01602 0.94938 0.97276 1.21813 0.97085 1.00938 0.97176 1.21698 0.82783 0.96045 0.98995 1.46953 1.15641 1.05751 1.67884 1.16079 0.80423 0.85433 0.78092 1.90896 1.82565 1.12975 1.59964 1.45666 1.11443 1.09826 1.72050 1.21996 0.82313 0.95466 0.95343 0.89830 1.22628 0.99724 1.00204 0.94638 1.22053 0.90272 1.01212 0.99722 1.19383 0.91469 0.95856 0.89939 0.95046 1.21065 1.11173 1.01132 1.22110 0.92736 1.24977 0.97555 0.95191 0.96151 1.69961 1.35248 1.20734 1.26550 0.86717 0.81923 0.81565 0.78109 1.21338 1.20351 1.20314 1.22868 0.94133 0.98468 1.00271 1.21911 1.01778 0.80537 0.96285 0.87654 0.90324 0.89716 0.91246 0.91234 0.91153 0.91287 0.90428 0.91536 0.88858 0.92251 0.77683 0.93406 0.92927 0.92996 0.92467 0.92974 0.92858 0.92293 0.89151 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 10.44 101.05 1.06 -0.09 16 2 S -0.26 -2.51 21.74 -107.50 -2.34 -4.84 16 3 C -0.07 -0.68 2.54 -28.28 -0.07 -0.75 16 4 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 5 C -0.10 -0.84 4.38 -29.79 -0.13 -0.97 16 6 C -0.11 -0.89 5.51 -28.02 -0.15 -1.05 16 7 C -0.13 -0.96 5.71 -27.30 -0.16 -1.11 16 8 C 0.13 1.26 6.13 -2.94 -0.02 1.24 16 9 N -0.62 -7.23 2.23 -177.90 -0.40 -7.63 16 10 C 0.70 10.91 8.20 -86.92 -0.71 10.20 16 11 O -0.59 -11.41 15.37 5.29 0.08 -11.33 16 12 N -0.74 -11.13 4.94 -57.05 -0.28 -11.41 16 13 C 0.15 2.78 3.12 -66.26 -0.21 2.58 16 14 H 0.08 1.65 7.74 -51.93 -0.40 1.24 16 15 C -0.13 -2.61 6.53 -25.61 -0.17 -2.78 16 16 C -0.09 -2.17 5.40 -25.62 -0.14 -2.31 16 17 C 0.05 1.26 2.79 -90.12 -0.25 1.01 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -13.67 8.40 -34.44 -0.29 -13.96 16 20 H 0.05 1.41 7.77 -52.49 -0.41 1.00 16 21 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 22 N -0.89 -25.16 12.35 55.43 0.68 -24.47 16 23 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.12 -2.30 5.88 -24.73 -0.15 -2.44 16 28 C 0.12 1.14 4.54 -3.78 -0.02 1.12 16 29 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.08 0.65 6.86 -51.93 -0.36 0.29 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.53 7.35 -51.93 -0.38 0.15 16 34 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.42 7.31 -51.93 -0.38 0.04 16 38 H 0.09 1.11 6.91 -51.93 -0.36 0.76 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.39 5.02 6.12 -40.82 -0.25 4.77 16 41 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 44 H 0.06 1.43 7.93 -51.93 -0.41 1.01 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 49 H 0.08 0.71 4.50 -51.93 -0.23 0.47 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -29.96 383.94 -11.57 -41.53 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.59 Total: 4.23 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.50 Total: -7.69 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.01 Total: -43.52 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.34 Total: -4.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.96 -11.57 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.256 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds