Wall clock time and date at job start Tue Mar 31 2020 14:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81400 * 102.99980 * 2 1 4 4 H 1.08991 * 109.18703 * 304.56791 * 3 2 1 5 5 C 1.47093 * 109.32701 * 184.99778 * 3 2 1 6 6 C 1.52562 * 114.32959 * 176.93682 * 5 3 2 7 7 C 1.50885 * 109.35884 * 85.01449 * 6 5 3 8 8 C 1.53943 * 110.09521 * 268.11977 * 7 6 5 9 9 N 1.47608 * 112.14768 * 40.55724 * 8 7 6 10 10 C 1.34773 * 118.64596 * 222.13095 * 9 8 7 11 11 O 1.21582 * 120.00015 * 4.84312 * 10 9 8 12 12 N 1.34777 * 119.99803 * 184.84168 * 10 9 8 13 13 C 1.46500 * 119.99613 * 174.87996 * 12 10 9 14 14 H 1.08998 * 110.43730 * 323.91247 * 13 12 10 15 15 C 1.54260 * 110.48724 * 86.45580 * 13 12 10 16 16 C 1.53877 * 106.59923 * 142.28669 * 15 13 12 17 17 C 1.54257 * 106.59770 * 359.97438 * 16 15 13 18 18 H 1.09000 * 110.48756 * 95.20320 * 17 16 15 19 19 C 1.50703 * 110.48639 * 217.71438 * 17 16 15 20 20 H 1.07992 * 120.00283 * 118.54698 * 19 17 16 21 21 C 1.37886 * 119.99633 * 298.54578 * 19 17 16 22 22 N 1.31515 * 120.00212 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99655 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46739 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47163 * 299.99976 * 23 21 19 26 26 H 1.48501 * 109.47227 * 60.00224 * 23 21 19 27 27 C 1.54886 * 104.19877 * 336.39145 * 17 16 15 28 28 C 1.44583 * 122.70742 * 42.41214 * 9 8 7 29 29 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47351 * 300.00304 * 1 2 3 31 31 H 1.09011 * 109.46552 * 60.00191 * 1 2 3 32 32 H 1.09000 * 108.51328 * 55.67544 * 5 3 2 33 33 H 1.09004 * 108.38941 * 298.10055 * 5 3 2 34 34 H 1.09006 * 109.48589 * 325.05739 * 6 5 3 35 35 H 1.08993 * 109.51399 * 204.99608 * 6 5 3 36 36 H 1.08991 * 109.36735 * 147.92477 * 7 6 5 37 37 H 1.08996 * 109.25854 * 28.24377 * 7 6 5 38 38 H 1.09005 * 108.94932 * 279.87299 * 8 7 6 39 39 H 1.09000 * 108.94597 * 161.24714 * 8 7 6 40 40 H 0.97001 * 120.00010 * 354.88016 * 12 10 9 41 41 H 1.08999 * 110.03228 * 22.99986 * 15 13 12 42 42 H 1.09005 * 110.03174 * 261.56902 * 15 13 12 43 43 H 1.09006 * 110.03214 * 240.71018 * 16 15 13 44 44 H 1.08997 * 110.07481 * 119.30988 * 16 15 13 45 45 H 0.96993 * 119.99970 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.75848 * 156.25753 * 27 17 16 47 47 H 1.09005 * 110.75721 * 279.62505 * 27 17 16 48 48 H 1.08999 * 109.44998 * 29.03879 * 28 9 8 49 49 H 1.09004 * 109.44484 * 148.95810 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7336 2.2479 -0.8476 5 6 3.6790 1.9308 -0.1209 6 6 4.1439 3.3813 -0.2066 7 6 4.2908 3.9425 1.1863 8 6 2.9798 4.6201 1.6246 9 7 1.7902 3.8505 1.2106 10 6 0.7294 4.5178 0.7149 11 8 0.7967 5.7181 0.5339 12 7 -0.4061 3.8544 0.4199 13 6 -1.5950 4.5934 -0.0122 14 1 -1.6651 5.5441 0.5163 15 6 -1.5624 4.8245 -1.5370 16 6 -3.0105 4.6749 -2.0354 17 6 -3.8724 4.3573 -0.7961 18 1 -4.3147 5.2693 -0.3952 19 6 -4.9473 3.3596 -1.1427 20 1 -4.9719 2.3991 -0.6496 21 6 -5.8994 3.6730 -2.0896 22 7 -5.8697 4.8428 -2.6898 23 14 -7.2322 2.4365 -2.5188 24 1 -8.1246 3.0112 -3.5575 25 1 -6.6061 1.1938 -3.0373 26 1 -8.0251 2.1215 -1.3034 27 6 -2.8718 3.7464 0.2161 28 6 1.7140 2.4108 1.3204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 4.0128 1.4068 -1.0165 33 1 4.1501 1.4670 0.7457 34 1 3.4087 3.9668 -0.7588 35 1 5.1043 3.4261 -0.7199 36 1 5.0977 4.6752 1.1975 37 1 4.5278 3.1332 1.8768 38 1 2.9299 5.6146 1.1811 39 1 2.9778 4.7180 2.7102 40 1 -0.4361 2.8876 0.4937 41 1 -0.9246 4.0803 -2.0140 42 1 -1.1943 5.8272 -1.7549 43 1 -3.0755 3.8580 -2.7542 44 1 -3.3457 5.6043 -2.4956 45 1 -6.5392 5.0632 -3.3561 46 1 -3.2352 3.8633 1.2371 47 1 -2.6852 2.6967 -0.0108 48 1 2.3360 2.0767 2.1508 49 1 0.6803 2.1148 1.4996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331424987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:38 Heat of formation + Delta-G solvation = -58.917339 kcal Electronic energy + Delta-G solvation = -27205.110254 eV Core-core repulsion = 23677.883638 eV Total energy + Delta-G solvation = -3527.226616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76065 -39.43571 -38.34213 -35.61080 -34.90869 -34.03077 -33.17825 -29.98981 -29.90448 -28.90189 -27.55696 -26.46273 -25.69556 -23.29177 -21.68322 -21.54879 -21.01654 -20.37022 -19.14726 -18.47863 -17.69038 -17.63118 -16.62016 -16.60322 -16.34232 -15.90090 -15.71624 -15.45625 -15.30951 -14.73912 -14.41954 -14.36385 -14.28620 -14.19991 -14.10464 -13.67019 -13.44617 -13.31795 -13.06533 -12.79549 -12.64643 -12.54444 -12.44084 -12.27415 -12.12360 -11.77692 -11.71333 -11.60285 -11.47502 -11.42889 -11.23565 -11.06530 -10.97797 -10.76794 -10.46995 -10.16426 -9.60364 -8.68763 -8.09820 -6.20229 0.62052 1.43859 1.44749 1.45786 1.52182 1.72882 2.06873 2.45068 2.89340 3.21496 3.49173 3.61722 3.86282 3.93054 3.98193 4.00295 4.11429 4.16638 4.22587 4.29805 4.33841 4.36486 4.53856 4.63436 4.64373 4.73119 4.76560 4.82540 4.86820 4.94676 4.98963 5.02870 5.06540 5.10861 5.11577 5.16927 5.23766 5.30441 5.39204 5.41658 5.54651 5.64182 5.66708 5.84873 5.92485 5.97405 6.37391 6.89237 6.92100 7.47588 7.51019 8.99038 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.003438 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.022661 B = 8142.655425 C = 9335.832163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.263 6.263 3 C -0.064 4.064 4 H 0.067 0.933 5 C -0.099 4.099 6 C -0.106 4.106 7 C -0.122 4.122 8 C 0.122 3.878 9 N -0.613 5.613 10 C 0.695 3.305 11 O -0.629 6.629 12 N -0.726 5.726 13 C 0.168 3.832 14 H 0.069 0.931 15 C -0.121 4.121 16 C -0.082 4.082 17 C 0.042 3.958 18 H -0.001 1.001 19 C -0.528 4.528 20 H 0.062 0.938 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.953 3.047 24 H -0.290 1.290 25 H -0.269 1.269 26 H -0.270 1.270 27 C -0.103 4.103 28 C 0.120 3.880 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.401 0.599 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.580 -9.107 9.461 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.035 6.035 3 C -0.194 4.194 4 H 0.086 0.914 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.160 4.160 8 C 0.000 4.000 9 N -0.349 5.349 10 C 0.396 3.604 11 O -0.510 6.510 12 N -0.382 5.382 13 C 0.063 3.937 14 H 0.087 0.913 15 C -0.160 4.160 16 C -0.121 4.121 17 C 0.023 3.977 18 H 0.017 0.983 19 C -0.566 4.566 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.779 3.221 24 H -0.216 1.216 25 H -0.194 1.194 26 H -0.195 1.195 27 C -0.141 4.141 28 C -0.006 4.006 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.133 0.867 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 22.212 -9.062 9.232 25.704 hybrid contribution -2.126 0.475 -0.874 2.348 sum 20.085 -8.587 8.357 23.388 Atomic orbital electron populations 1.23572 0.92756 1.07807 1.05521 1.86854 1.08887 1.09979 1.97820 1.23017 1.01770 0.93583 1.01022 0.91409 1.20224 0.91898 0.97730 1.03926 1.20998 1.01408 0.94409 0.97751 1.21788 0.95781 1.01736 0.96717 1.21888 0.83258 0.95063 0.99761 1.46984 1.14871 1.06693 1.66382 1.16249 0.81124 0.84995 0.78034 1.90872 1.83399 1.15011 1.61725 1.45337 1.10588 1.10267 1.71992 1.21555 0.83271 0.95046 0.93870 0.91319 1.22477 0.97352 1.00206 0.95972 1.21819 0.92402 0.98862 0.98967 1.19371 0.92324 0.94561 0.91490 0.98290 1.21474 1.11660 1.01689 1.21819 0.91990 1.25790 0.99908 0.96865 0.96270 1.70111 1.36094 1.22610 1.27217 0.85692 0.79157 0.79412 0.77877 1.21606 1.19360 1.19484 1.22656 0.93004 0.98955 0.99446 1.22110 1.02563 0.78866 0.97065 0.86684 0.89305 0.90786 0.91594 0.89661 0.94154 0.89850 0.88808 0.89488 0.91415 0.90627 0.76112 0.92183 0.93656 0.94701 0.95435 0.93238 0.91644 0.90723 0.86669 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 10.44 113.37 1.18 -0.87 16 2 S -0.26 -4.57 21.74 -56.49 -1.23 -5.79 16 3 C -0.06 -1.08 2.54 29.59 0.08 -1.01 16 4 H 0.07 1.49 8.14 -2.40 -0.02 1.47 16 5 C -0.10 -1.41 4.38 28.61 0.13 -1.29 16 6 C -0.11 -1.53 5.51 29.76 0.16 -1.36 16 7 C -0.12 -1.42 5.71 30.22 0.17 -1.24 16 8 C 0.12 2.20 6.13 86.49 0.53 2.73 16 9 N -0.61 -13.21 2.23 -835.02 -1.86 -15.07 16 10 C 0.69 21.28 8.20 179.06 1.47 22.75 16 11 O -0.63 -24.80 15.37 -3.97 -0.06 -24.86 16 12 N -0.73 -21.24 4.94 -452.66 -2.24 -23.48 16 13 C 0.17 6.09 3.12 46.07 0.14 6.24 16 14 H 0.07 2.74 7.74 -2.39 -0.02 2.72 16 15 C -0.12 -4.84 6.53 31.32 0.20 -4.63 16 16 C -0.08 -3.91 5.40 31.32 0.17 -3.75 16 17 C 0.04 2.04 2.79 -10.47 -0.03 2.01 16 18 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 19 C -0.53 -28.06 8.40 25.60 0.22 -27.84 16 20 H 0.06 3.13 7.77 -2.91 -0.02 3.11 16 21 C 0.01 0.57 5.33 84.66 0.45 1.02 16 22 N -0.92 -53.72 12.35 21.45 0.26 -53.46 16 23 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.10 -3.87 5.88 31.89 0.19 -3.69 16 28 C 0.12 1.93 4.54 87.57 0.40 2.33 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.23 6.86 -2.39 -0.02 1.21 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.08 0.98 7.35 -2.39 -0.02 0.97 16 34 H 0.04 0.84 7.48 -2.38 -0.02 0.82 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.71 7.31 -2.39 -0.02 0.70 16 38 H 0.07 1.60 6.91 -2.38 -0.02 1.59 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.40 9.63 6.12 -92.71 -0.57 9.06 16 41 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 42 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.03 1.74 7.83 -2.38 -0.02 1.73 16 44 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16 45 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.07 2.59 7.93 -2.38 -0.02 2.57 16 48 H 0.12 1.37 8.07 -2.39 -0.02 1.35 16 49 H 0.08 1.23 4.50 -2.38 -0.01 1.22 16 Total: -1.00 -66.61 383.94 2.72 -63.89 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.36 Total: 22.54 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.46 Total: -8.60 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -3.83 Total: -92.01 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -1.23 Total: -5.79 kcal Total: -66.61 2.72 -63.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.977 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds