Wall clock time and date at job start Tue Mar 31 2020 15:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47426 * 2 1 4 4 C 1.50701 * 109.46937 * 120.00190 * 2 1 3 5 5 N 1.30917 * 126.48647 * 299.95249 * 4 2 1 6 6 N 1.28983 * 109.76156 * 179.97438 * 5 4 2 7 7 C 1.29641 * 109.46818 * 359.95471 * 6 5 4 8 8 N 1.34417 * 126.48276 * 120.00283 * 4 2 1 9 9 C 1.46307 * 129.75861 * 0.24311 * 8 4 2 10 10 C 1.53465 * 108.17734 * 163.57736 * 9 8 4 11 11 N 1.46971 * 109.73811 * 49.60186 * 10 9 8 12 12 C 1.46902 * 110.99614 * 165.12696 * 11 10 9 13 13 C 1.50700 * 109.46996 * 190.32563 * 12 11 10 14 14 C 1.38639 * 119.75219 * 90.00257 * 13 12 11 15 15 C 1.37616 * 120.24706 * 179.97438 * 14 13 12 16 16 C 1.40711 * 119.74696 * 0.27455 * 15 14 13 17 17 C 1.41404 * 120.24129 * 179.70362 * 16 15 14 18 18 H 1.07992 * 120.00276 * 24.26322 * 17 16 15 19 19 C 1.39947 * 119.99508 * 204.26753 * 17 16 15 20 20 N 1.30821 * 120.00278 * 17.71502 * 19 17 16 21 21 Si 1.86794 * 119.99656 * 197.70800 * 19 17 16 22 22 H 1.48496 * 109.47373 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47179 * 120.00490 * 21 19 17 24 24 H 1.48503 * 109.47456 * 240.00064 * 21 19 17 25 25 C 1.40712 * 119.51218 * 359.43126 * 16 15 14 26 26 C 1.37620 * 119.74136 * 0.58873 * 25 16 15 27 27 C 1.47378 * 111.25378 * 289.26398 * 11 10 9 28 28 H 1.08997 * 109.47005 * 300.00489 * 1 2 3 29 29 H 1.09006 * 109.47159 * 59.99783 * 1 2 3 30 30 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47208 * 240.00251 * 2 1 3 32 32 H 1.09000 * 109.46722 * 59.99953 * 3 2 1 33 33 H 1.08997 * 109.47133 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47217 * 300.00003 * 3 2 1 35 35 H 1.09001 * 109.72510 * 283.25595 * 9 8 4 36 36 H 1.09005 * 109.72291 * 43.86890 * 9 8 4 37 37 H 1.08999 * 109.43148 * 289.52145 * 10 9 8 38 38 H 1.09001 * 109.42583 * 169.68231 * 10 9 8 39 39 H 1.08995 * 109.47358 * 70.33031 * 12 11 10 40 40 H 1.08992 * 109.47454 * 310.32290 * 12 11 10 41 41 H 1.08001 * 119.87027 * 359.97438 * 14 13 12 42 42 H 1.08009 * 120.12270 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00115 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.12815 * 180.30168 * 25 16 15 45 45 H 1.08000 * 119.86877 * 179.70299 * 26 25 16 46 46 H 1.09002 * 109.75746 * 169.70188 * 27 11 10 47 47 H 1.08999 * 109.75105 * 290.39388 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7962 -0.3753 2.4738 6 7 2.3822 -1.2055 3.2681 7 6 3.0114 -2.0995 2.5711 8 7 2.8081 -1.8077 1.2590 9 6 3.3660 -2.5882 0.1544 10 6 4.4916 -3.4700 0.7119 11 7 4.0159 -4.1885 1.9025 12 6 4.9247 -5.2886 2.2515 13 6 4.2852 -6.1526 3.3076 14 6 3.4971 -7.2293 2.9312 15 6 2.9086 -8.0254 3.8872 16 6 3.1046 -7.7395 5.2509 17 6 2.4998 -8.5468 6.2419 18 1 2.2282 -9.5672 6.0154 19 6 2.2530 -8.0233 7.5161 20 7 2.2496 -6.7284 7.7019 21 14 1.9284 -9.1737 8.9515 22 1 1.9875 -10.5810 8.4812 23 1 2.9575 -8.9592 10.0004 24 1 0.5826 -8.8956 9.5143 25 6 3.9115 -6.6479 5.6213 26 6 4.4898 -5.8651 4.6483 27 6 3.8338 -3.2720 3.0422 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 2.5889 -3.2158 -0.2819 36 1 3.7661 -1.9167 -0.6053 37 1 5.3424 -2.8444 0.9819 38 1 4.7983 -4.1895 -0.0473 39 1 5.8600 -4.8798 2.6339 40 1 5.1263 -5.8887 1.3643 41 1 3.3445 -7.4441 1.8838 42 1 2.2954 -8.8639 3.5917 43 1 2.0782 -6.3656 8.5850 44 1 4.0726 -6.4224 6.6652 45 1 5.1056 -5.0239 4.9303 46 1 3.3127 -3.7869 3.8494 47 1 4.8050 -2.9240 3.3939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332626790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:03 Heat of formation + Delta-G solvation = 95.776957 kcal Electronic energy + Delta-G solvation = -27360.984578 eV Core-core repulsion = 23737.314809 eV Total energy + Delta-G solvation = -3623.669768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.20114 -38.61074 -37.17587 -35.97727 -34.61342 -33.51326 -31.02544 -30.67348 -29.32448 -29.11059 -27.41501 -27.06646 -25.34989 -23.76912 -23.57356 -22.42871 -21.03943 -20.10356 -19.82563 -19.57462 -17.31933 -17.17545 -16.63658 -15.69782 -15.26658 -15.19236 -15.04936 -14.76577 -14.53865 -14.08342 -13.85481 -13.55332 -13.44066 -13.25743 -12.76331 -12.50225 -12.40099 -12.24801 -11.97457 -11.95393 -11.68489 -11.62393 -11.50258 -11.45793 -11.32562 -11.19803 -11.08394 -10.96791 -10.57388 -10.38492 -10.15744 -10.04324 -9.62391 -9.42116 -9.16005 -8.93712 -8.29564 -7.47564 -7.33798 -6.77794 -4.37148 1.91240 2.47459 2.68077 2.99720 3.05536 3.07859 3.10846 3.13802 3.80208 3.92375 4.09092 4.27935 4.39730 4.53745 4.60440 4.76078 4.80180 4.86866 4.98896 5.21638 5.34213 5.38090 5.39003 5.49157 5.50423 5.59671 5.61230 5.68509 5.68695 5.79021 5.88480 5.99480 6.06541 6.11333 6.15691 6.28899 6.30784 6.35181 6.88556 6.89252 6.97801 7.06170 7.10747 7.26623 7.35039 7.58683 7.83862 8.03363 8.08242 8.27948 8.61823 8.87627 8.89476 8.95114 10.16298 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002829 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.390358 B = 9894.872004 C =10764.386564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 C -0.140 4.140 4 C 0.176 3.824 5 N -0.296 5.296 6 N -0.288 5.288 7 C 0.190 3.810 8 N -0.467 5.467 9 C 0.111 3.889 10 C 0.036 3.964 11 N -0.535 5.535 12 C 0.126 3.874 13 C -0.220 4.220 14 C -0.065 4.065 15 C -0.230 4.230 16 C 0.115 3.885 17 C -0.461 4.461 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.787 5.787 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.165 4.165 26 C -0.093 4.093 27 C 0.143 3.857 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.281 0.719 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 10.135 -16.000 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 C -0.199 4.199 4 C -0.092 4.092 5 N -0.136 5.136 6 N -0.127 5.127 7 C -0.078 4.078 8 N -0.158 5.158 9 C -0.013 4.013 10 C -0.093 4.093 11 N -0.260 5.260 12 C 0.001 3.999 13 C -0.222 4.222 14 C -0.084 4.084 15 C -0.250 4.250 16 C 0.112 3.888 17 C -0.490 4.490 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.185 4.185 26 C -0.112 4.112 27 C 0.014 3.986 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.102 0.898 46 H 0.143 0.857 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.368 10.870 -14.754 18.478 hybrid contribution 0.965 -0.849 -0.218 1.304 sum 3.333 10.021 -14.972 18.322 Atomic orbital electron populations 1.21798 0.92674 1.02537 1.02947 1.19515 0.96925 0.95599 0.90235 1.21796 1.00951 0.94098 1.03009 1.24476 0.97334 0.89407 0.97963 1.74471 1.20175 1.21546 0.97402 1.74019 1.10387 1.02762 1.25545 1.24806 1.02469 1.00022 0.80473 1.45952 1.38783 1.22443 1.08652 1.22129 0.97707 0.93740 0.87689 1.22450 0.94492 0.96994 0.95376 1.62299 1.50098 1.10171 1.03432 1.20769 0.91457 0.89918 0.97801 1.18742 1.10113 1.00917 0.92421 1.20286 0.96458 0.94920 0.96731 1.20955 1.07322 1.03416 0.93294 1.17639 0.88599 0.91170 0.91406 1.19653 1.34955 0.99386 0.94997 0.90414 1.25929 0.92879 0.95248 1.00250 1.69827 1.34485 1.12452 1.24407 0.86287 0.78613 0.81429 0.80573 1.18412 1.19673 1.19951 1.21285 1.00033 0.98641 0.98496 1.20520 0.99728 0.98297 0.92652 1.20711 0.96860 0.86516 0.94551 0.91140 0.91588 0.92510 0.90019 0.91145 0.92794 0.91569 0.88643 0.88890 0.93854 0.88130 0.95092 0.90988 0.89605 0.89144 0.90778 0.86482 0.89803 0.85678 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.15 0.34 -0.94 16 2 C 0.00 -0.02 3.32 -91.77 -0.30 -0.32 16 3 C -0.14 -1.17 9.18 37.16 0.34 -0.82 16 4 C 0.18 2.47 6.59 -155.63 -1.03 1.45 16 5 N -0.30 -5.28 12.24 32.66 0.40 -4.88 16 6 N -0.29 -5.66 12.20 32.76 0.40 -5.26 16 7 C 0.19 3.27 7.86 -155.27 -1.22 2.05 16 8 N -0.47 -6.53 3.12 -110.79 -0.35 -6.87 16 9 C 0.11 1.08 6.79 -3.90 -0.03 1.05 16 10 C 0.04 0.37 5.55 -3.54 -0.02 0.35 16 11 N -0.53 -7.85 4.65 -236.70 -1.10 -8.95 16 12 C 0.13 1.93 5.11 -4.98 -0.03 1.91 16 13 C -0.22 -4.41 4.91 -104.33 -0.51 -4.92 16 14 C -0.07 -1.39 9.67 -39.66 -0.38 -1.77 16 15 C -0.23 -5.53 9.80 -38.88 -0.38 -5.91 16 16 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 17 C -0.46 -12.12 9.06 -37.74 -0.34 -12.46 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 20 N -0.79 -20.37 10.96 55.55 0.61 -19.77 16 21 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.17 -4.17 8.70 -38.87 -0.34 -4.51 16 26 C -0.09 -2.04 8.08 -39.66 -0.32 -2.36 16 27 C 0.14 2.36 5.22 -4.68 -0.02 2.34 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.60 7.58 -51.93 -0.39 0.20 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 37 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.10 0.81 7.82 -51.93 -0.41 0.41 16 39 H 0.03 0.45 8.02 -51.93 -0.42 0.03 16 40 H 0.07 0.98 7.80 -51.93 -0.41 0.57 16 41 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 45 H 0.08 1.66 8.02 -52.49 -0.42 1.24 16 46 H 0.13 2.47 6.60 -51.93 -0.34 2.12 16 47 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -30.63 379.32 -11.60 -42.23 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.32 Total: 4.85 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -4.93 Total: -20.67 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.04 Total: -45.73 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.63 -11.60 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332626790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.009 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds