Wall clock time and date at job start Tue Mar 31 2020 15:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47426 * 2 1 4 4 C 1.50701 * 109.46937 * 120.00190 * 2 1 3 5 5 N 1.30917 * 126.48647 * 299.95249 * 4 2 1 6 6 N 1.28983 * 109.76156 * 179.97438 * 5 4 2 7 7 C 1.29641 * 109.46818 * 359.95471 * 6 5 4 8 8 N 1.34417 * 126.48276 * 120.00283 * 4 2 1 9 9 C 1.46307 * 129.75861 * 0.24311 * 8 4 2 10 10 C 1.53465 * 108.17734 * 163.57736 * 9 8 4 11 11 N 1.46971 * 109.73811 * 49.60186 * 10 9 8 12 12 C 1.46902 * 110.99614 * 165.12696 * 11 10 9 13 13 C 1.50700 * 109.46996 * 190.32563 * 12 11 10 14 14 C 1.38639 * 119.75219 * 90.00257 * 13 12 11 15 15 C 1.37616 * 120.24706 * 179.97438 * 14 13 12 16 16 C 1.40711 * 119.74696 * 0.27455 * 15 14 13 17 17 C 1.41404 * 120.24129 * 179.70362 * 16 15 14 18 18 H 1.07992 * 120.00276 * 24.26322 * 17 16 15 19 19 C 1.39947 * 119.99508 * 204.26753 * 17 16 15 20 20 N 1.30821 * 120.00278 * 17.71502 * 19 17 16 21 21 Si 1.86794 * 119.99656 * 197.70800 * 19 17 16 22 22 H 1.48496 * 109.47373 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47179 * 120.00490 * 21 19 17 24 24 H 1.48503 * 109.47456 * 240.00064 * 21 19 17 25 25 C 1.40712 * 119.51218 * 359.43126 * 16 15 14 26 26 C 1.37620 * 119.74136 * 0.58873 * 25 16 15 27 27 C 1.47378 * 111.25378 * 289.26398 * 11 10 9 28 28 H 1.08997 * 109.47005 * 300.00489 * 1 2 3 29 29 H 1.09006 * 109.47159 * 59.99783 * 1 2 3 30 30 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47208 * 240.00251 * 2 1 3 32 32 H 1.09000 * 109.46722 * 59.99953 * 3 2 1 33 33 H 1.08997 * 109.47133 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47217 * 300.00003 * 3 2 1 35 35 H 1.09001 * 109.72510 * 283.25595 * 9 8 4 36 36 H 1.09005 * 109.72291 * 43.86890 * 9 8 4 37 37 H 1.08999 * 109.43148 * 289.52145 * 10 9 8 38 38 H 1.09001 * 109.42583 * 169.68231 * 10 9 8 39 39 H 1.08995 * 109.47358 * 70.33031 * 12 11 10 40 40 H 1.08992 * 109.47454 * 310.32290 * 12 11 10 41 41 H 1.08001 * 119.87027 * 359.97438 * 14 13 12 42 42 H 1.08009 * 120.12270 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00115 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.12815 * 180.30168 * 25 16 15 45 45 H 1.08000 * 119.86877 * 179.70299 * 26 25 16 46 46 H 1.09002 * 109.75746 * 169.70188 * 27 11 10 47 47 H 1.08999 * 109.75105 * 290.39388 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7962 -0.3753 2.4738 6 7 2.3822 -1.2055 3.2681 7 6 3.0114 -2.0995 2.5711 8 7 2.8081 -1.8077 1.2590 9 6 3.3660 -2.5882 0.1544 10 6 4.4916 -3.4700 0.7119 11 7 4.0159 -4.1885 1.9025 12 6 4.9247 -5.2886 2.2515 13 6 4.2852 -6.1526 3.3076 14 6 3.4971 -7.2293 2.9312 15 6 2.9086 -8.0254 3.8872 16 6 3.1046 -7.7395 5.2509 17 6 2.4998 -8.5468 6.2419 18 1 2.2282 -9.5672 6.0154 19 6 2.2530 -8.0233 7.5161 20 7 2.2496 -6.7284 7.7019 21 14 1.9284 -9.1737 8.9515 22 1 1.9875 -10.5810 8.4812 23 1 2.9575 -8.9592 10.0004 24 1 0.5826 -8.8956 9.5143 25 6 3.9115 -6.6479 5.6213 26 6 4.4898 -5.8651 4.6483 27 6 3.8338 -3.2720 3.0422 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 2.5889 -3.2158 -0.2819 36 1 3.7661 -1.9167 -0.6053 37 1 5.3424 -2.8444 0.9819 38 1 4.7983 -4.1895 -0.0473 39 1 5.8600 -4.8798 2.6339 40 1 5.1263 -5.8887 1.3643 41 1 3.3445 -7.4441 1.8838 42 1 2.2954 -8.8639 3.5917 43 1 2.0782 -6.3656 8.5850 44 1 4.0726 -6.4224 6.6652 45 1 5.1056 -5.0239 4.9303 46 1 3.3127 -3.7869 3.8494 47 1 4.8050 -2.9240 3.3939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332626790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:02 Heat of formation + Delta-G solvation = 78.631818 kcal Electronic energy + Delta-G solvation = -27361.728047 eV Core-core repulsion = 23737.314809 eV Total energy + Delta-G solvation = -3624.413237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.35955 -39.99817 -38.67243 -36.83168 -35.97518 -35.06850 -32.42938 -31.95289 -31.10681 -30.37121 -28.55815 -28.08104 -26.76561 -25.01108 -24.53304 -23.74865 -22.83845 -21.58060 -20.98163 -20.64871 -19.20514 -18.17280 -17.69002 -17.21271 -16.64343 -16.39997 -16.21616 -15.90973 -15.70491 -15.35908 -15.23178 -14.95371 -14.70790 -14.22940 -14.03974 -13.81718 -13.74694 -13.48787 -13.22173 -13.02262 -12.97444 -12.89499 -12.73742 -12.63441 -12.52046 -12.31382 -12.23429 -12.19764 -12.13130 -11.97623 -11.39542 -11.28911 -11.23772 -11.06875 -11.00413 -10.16093 -9.48510 -9.27662 -9.15629 -8.63077 -6.32561 0.78732 0.94010 1.19399 1.35998 1.45764 1.50912 1.52325 1.76249 2.19580 2.53629 2.85473 3.17002 3.34732 3.47345 3.74393 3.80942 3.96545 4.07403 4.13275 4.18733 4.28855 4.29194 4.36897 4.38244 4.58544 4.60607 4.66689 4.69491 4.71134 4.78497 4.79329 4.86120 4.91823 4.98113 5.02281 5.07284 5.11759 5.16829 5.31643 5.39498 5.40382 5.50155 5.71726 5.79800 5.84879 5.98220 6.09935 6.13909 6.28525 6.42843 6.73570 6.96279 7.06988 7.68261 8.33228 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002829 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.390358 B = 9894.872004 C =10764.386564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.136 4.136 4 C 0.191 3.809 5 N -0.342 5.342 6 N -0.339 5.339 7 C 0.176 3.824 8 N -0.463 5.463 9 C 0.102 3.898 10 C 0.035 3.965 11 N -0.545 5.545 12 C 0.131 3.869 13 C -0.199 4.199 14 C -0.068 4.068 15 C -0.248 4.248 16 C 0.079 3.921 17 C -0.502 4.502 18 H 0.073 0.927 19 C 0.033 3.967 20 N -0.827 5.827 21 Si 0.980 3.020 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.268 1.268 25 C -0.193 4.193 26 C -0.095 4.095 27 C 0.152 3.848 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.052 0.948 38 H 0.137 0.863 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.286 0.714 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 10.770 -20.292 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 C -0.194 4.194 4 C -0.078 4.078 5 N -0.181 5.181 6 N -0.178 5.178 7 C -0.093 4.093 8 N -0.154 5.154 9 C -0.019 4.019 10 C -0.092 4.092 11 N -0.271 5.271 12 C 0.005 3.995 13 C -0.200 4.200 14 C -0.086 4.086 15 C -0.267 4.267 16 C 0.077 3.923 17 C -0.532 4.532 18 H 0.091 0.909 19 C -0.181 4.181 20 N -0.453 5.453 21 Si 0.801 3.199 22 H -0.180 1.180 23 H -0.189 1.189 24 H -0.193 1.193 25 C -0.212 4.212 26 C -0.114 4.114 27 C 0.022 3.978 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.070 0.930 38 H 0.155 0.845 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.539 11.503 -19.082 22.560 hybrid contribution 0.651 -0.911 0.862 1.413 sum 4.190 10.592 -18.220 21.488 Atomic orbital electron populations 1.21793 0.92468 1.02009 1.03460 1.19864 0.97003 0.96155 0.89205 1.21779 1.00949 0.93257 1.03432 1.25373 0.95410 0.88766 0.98270 1.74362 1.21916 1.22637 0.99215 1.73898 1.11988 1.04283 1.27654 1.24791 1.02670 0.99877 0.82011 1.46209 1.38294 1.22395 1.08469 1.22605 0.97884 0.94345 0.87055 1.22653 0.94857 0.97761 0.93932 1.62108 1.50704 1.10279 1.03969 1.20757 0.91343 0.89899 0.97470 1.19285 1.07540 1.00301 0.92921 1.20663 0.95678 0.94421 0.97870 1.21182 1.08068 1.04260 0.93216 1.17974 0.89600 0.92100 0.92670 1.19866 1.37181 0.99530 0.96628 0.90879 1.26763 0.92190 0.96691 1.02503 1.69902 1.36042 1.14141 1.25194 0.85192 0.78666 0.79133 0.76912 1.18002 1.18850 1.19290 1.21242 1.01739 0.99955 0.98298 1.20773 0.99313 0.97975 0.93333 1.20441 0.96561 0.86397 0.94415 0.93462 0.88263 0.93538 0.86382 0.93463 0.92738 0.88415 0.87609 0.84502 0.92971 0.84518 0.93636 0.87665 0.86172 0.88965 0.90361 0.88791 0.88156 0.89993 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.18 71.98 0.66 -1.54 16 2 C 0.00 -0.02 3.32 -11.54 -0.04 -0.06 16 3 C -0.14 -1.86 9.18 71.98 0.66 -1.20 16 4 C 0.19 5.08 6.59 138.21 0.91 5.99 16 5 N -0.34 -12.47 12.24 -50.58 -0.62 -13.09 16 6 N -0.34 -13.84 12.20 -50.27 -0.61 -14.46 16 7 C 0.18 6.04 7.86 138.11 1.09 7.12 16 8 N -0.46 -11.85 3.12 -504.43 -1.57 -13.43 16 9 C 0.10 1.48 6.79 86.57 0.59 2.07 16 10 C 0.04 0.55 5.55 86.45 0.48 1.03 16 11 N -0.55 -14.24 4.65 -902.78 -4.19 -18.44 16 12 C 0.13 3.51 5.11 85.56 0.44 3.94 16 13 C -0.20 -7.67 4.91 -19.67 -0.10 -7.77 16 14 C -0.07 -2.80 9.67 22.22 0.21 -2.58 16 15 C -0.25 -12.17 9.80 22.73 0.22 -11.95 16 16 C 0.08 4.35 5.57 -21.29 -0.12 4.23 16 17 C -0.50 -28.04 9.06 23.46 0.21 -27.83 16 18 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 19 C 0.03 1.73 5.14 85.26 0.44 2.17 16 20 N -0.83 -45.52 10.96 21.83 0.24 -45.28 16 21 Si 0.98 39.89 29.59 68.60 2.03 41.92 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 25 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 26 C -0.10 -4.25 8.08 22.22 0.18 -4.07 16 27 C 0.15 4.94 5.22 85.49 0.45 5.39 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 1.05 7.58 -2.39 -0.02 1.03 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.14 0.85 8.03 -2.38 -0.02 0.83 16 37 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 38 H 0.14 1.23 7.82 -2.39 -0.02 1.21 16 39 H 0.05 1.13 8.02 -2.39 -0.02 1.11 16 40 H 0.11 2.22 7.80 -2.39 -0.02 2.20 16 41 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 42 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 44 H 0.09 5.35 6.16 -2.91 -0.02 5.34 16 45 H 0.10 4.04 8.02 -2.91 -0.02 4.02 16 46 H 0.08 3.37 6.60 -2.39 -0.02 3.35 16 47 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 Total: -1.00 -75.28 379.32 2.71 -72.58 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.96 Total: 25.34 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 6.48 Total: -35.14 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -6.76 Total: -104.69 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -75.28 2.71 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332626790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.207 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds