Wall clock time and date at job start Tue Mar 31 2020 14:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 103.00086 * 2 1 4 4 H 1.09003 * 109.47056 * 305.00353 * 3 2 1 5 5 C 1.52998 * 109.46776 * 65.00617 * 3 2 1 6 6 C 1.52998 * 109.47024 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47170 * 300.00063 * 6 5 3 8 8 C 1.52995 * 109.47187 * 59.99660 * 7 6 5 9 9 H 1.08996 * 109.47402 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47170 * 60.00218 * 8 7 6 11 11 C 1.34779 * 119.99785 * 85.27165 * 10 8 7 12 12 O 1.21586 * 120.00241 * 354.80790 * 11 10 8 13 13 N 1.34775 * 119.99624 * 174.80374 * 11 10 8 14 14 C 1.46918 * 120.63657 * 4.94333 * 13 11 10 15 15 C 1.53617 * 108.54834 * 126.36594 * 14 13 11 16 16 C 1.53039 * 109.24327 * 54.85488 * 15 14 13 17 17 C 1.50700 * 109.45993 * 178.49091 * 16 15 14 18 18 H 1.07997 * 119.99854 * 120.07231 * 17 16 15 19 19 C 1.37873 * 120.00372 * 300.06742 * 17 16 15 20 20 N 1.31523 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00423 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46637 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47233 * 119.99824 * 21 19 17 24 24 H 1.48493 * 109.47135 * 240.00352 * 21 19 17 25 25 C 1.53035 * 109.54076 * 298.51557 * 16 15 14 26 26 C 1.46933 * 120.62967 * 185.21607 * 13 11 10 27 27 C 1.52995 * 109.46944 * 185.00534 * 3 2 1 28 28 H 1.09007 * 109.46573 * 299.99274 * 1 2 3 29 29 H 1.08999 * 109.47738 * 59.99244 * 1 2 3 30 30 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47510 * 59.99557 * 5 3 2 32 32 H 1.09004 * 109.47128 * 299.99848 * 5 3 2 33 33 H 1.09005 * 109.47245 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.47192 * 60.00142 * 6 5 3 35 35 H 1.08997 * 109.46459 * 299.99928 * 7 6 5 36 36 H 1.08998 * 109.46971 * 180.02562 * 7 6 5 37 37 H 0.97004 * 120.00186 * 265.00446 * 10 8 7 38 38 H 1.09003 * 109.58717 * 246.20331 * 14 13 11 39 39 H 1.09007 * 109.58382 * 6.61854 * 14 13 11 40 40 H 1.09008 * 109.63558 * 294.86203 * 15 14 13 41 41 H 1.09003 * 109.46206 * 174.74729 * 15 14 13 42 42 H 1.09003 * 109.44531 * 58.53001 * 16 15 14 43 43 H 0.96997 * 119.99785 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.49490 * 301.41468 * 25 16 15 45 45 H 1.08997 * 109.52740 * 181.33024 * 25 16 15 46 46 H 1.09009 * 109.58462 * 353.37779 * 26 13 11 47 47 H 1.08995 * 109.58710 * 113.65383 * 26 13 11 48 48 H 1.08995 * 109.47331 * 60.00201 * 27 3 2 49 49 H 1.09003 * 109.47096 * 299.99794 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 2.0865 3.8924 1.3072 7 6 3.6014 4.0667 1.1810 8 6 4.0805 3.4326 -0.1263 9 1 5.1597 3.5564 -0.2160 10 7 3.4179 4.0863 -1.2577 11 6 3.9311 5.2197 -1.7760 12 8 4.8881 5.7513 -1.2470 13 7 3.3834 5.7637 -2.8807 14 6 2.1628 5.1954 -3.4688 15 6 1.1215 6.3158 -3.6110 16 6 1.7277 7.4689 -4.4142 17 6 0.6979 8.5552 -4.5885 18 1 0.8890 9.5468 -4.2055 19 6 -0.4881 8.2834 -5.2368 20 7 -0.7210 7.0757 -5.7028 21 14 -1.7643 9.6302 -5.4534 22 1 -1.2637 10.8889 -4.8448 23 1 -2.0150 9.8464 -6.9010 24 1 -3.0283 9.2262 -4.7871 25 6 2.9401 8.0305 -3.6682 26 6 3.9989 6.9329 -3.5234 27 6 3.7369 1.9411 -0.1259 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2355 1.9148 2.1492 32 1 0.6637 2.2778 1.3971 33 1 1.7448 4.3442 2.2385 34 1 1.5935 4.3788 0.4655 35 1 4.0943 3.5803 2.0228 36 1 3.8462 5.1288 1.1813 37 1 2.6121 3.7013 -1.6362 38 1 2.3901 4.7774 -4.4495 39 1 1.7733 4.4131 -2.8173 40 1 0.8312 6.6737 -2.6231 41 1 0.2438 5.9320 -4.1311 42 1 2.0402 7.1045 -5.3928 43 1 -1.5556 6.8844 -6.1586 44 1 2.6328 8.3722 -2.6797 45 1 3.3575 8.8669 -4.2288 46 1 4.8214 7.2975 -2.9078 47 1 4.3752 6.6531 -4.5073 48 1 4.0783 1.4895 -1.0572 49 1 4.2296 1.4545 0.7159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336593203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:12 Heat of formation + Delta-G solvation = -49.193658 kcal Electronic energy + Delta-G solvation = -27035.557770 eV Core-core repulsion = 23508.752804 eV Total energy + Delta-G solvation = -3526.804966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37346 -38.58290 -36.68612 -33.80610 -33.38746 -31.33156 -31.09716 -30.13883 -29.65281 -28.80023 -26.09062 -23.32354 -22.93443 -22.73813 -22.20525 -20.69265 -19.25224 -18.96006 -17.72550 -16.73369 -16.27612 -15.90502 -15.56601 -15.14140 -14.90602 -14.56205 -14.33960 -14.16302 -13.78111 -13.70547 -13.43313 -13.18628 -13.12299 -12.78102 -12.65303 -12.47729 -12.36908 -12.26617 -12.03484 -11.79463 -11.56279 -11.32149 -10.99107 -10.98159 -10.75406 -10.62651 -10.39738 -10.38965 -10.17778 -9.97229 -9.74751 -9.56157 -9.16667 -8.97728 -8.88603 -8.40383 -7.94439 -7.89387 -6.05945 -4.11762 1.41427 2.30244 3.01922 3.24841 3.33572 3.37903 3.57102 4.21672 4.34563 4.36645 4.38740 4.70607 4.86217 4.88288 4.92516 4.96483 5.09180 5.18079 5.23448 5.32539 5.39936 5.47171 5.49549 5.63566 5.72708 5.74560 5.76375 5.90212 5.94827 6.01305 6.06864 6.15588 6.18624 6.19404 6.24208 6.46853 6.67062 6.72774 6.86528 6.98967 7.12849 7.21018 7.45155 7.64925 7.90110 8.00874 8.31974 8.38459 8.92080 8.96365 9.53537 10.99486 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003370 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.928764 B = 8307.718371 C = 9545.910247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.050 4.050 4 H 0.085 0.915 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.172 3.828 9 H 0.092 0.908 10 N -0.745 5.745 11 C 0.706 3.294 12 O -0.604 6.604 13 N -0.619 5.619 14 C 0.111 3.889 15 C -0.122 4.122 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.124 4.124 26 C 0.130 3.870 27 C -0.106 4.106 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.027 0.973 43 H 0.259 0.741 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -13.598 11.994 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.179 4.179 4 H 0.104 0.896 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.065 3.935 9 H 0.110 0.890 10 N -0.404 5.404 11 C 0.408 3.592 12 O -0.484 6.484 13 N -0.355 5.355 14 C -0.012 4.012 15 C -0.161 4.161 16 C 0.031 3.969 17 C -0.548 4.548 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.162 4.162 26 C 0.007 3.993 27 C -0.145 4.145 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.554 -14.243 12.235 19.581 hybrid contribution -2.282 1.456 -0.420 2.739 sum 3.272 -12.787 11.815 17.715 Atomic orbital electron populations 1.23400 0.94035 1.06372 1.05195 1.86805 1.07625 1.11479 1.97948 1.23196 1.00159 0.93134 1.01415 0.89638 1.21873 1.00878 0.96248 0.96147 1.21516 0.96596 0.95026 1.02385 1.21960 0.95718 1.02345 0.97052 1.20691 0.97938 0.89527 0.85344 0.89042 1.45431 1.31532 1.27198 1.36278 1.15855 0.82373 0.80535 0.80428 1.90845 1.30692 1.63761 1.63059 1.47409 1.28308 1.32354 1.27418 1.21958 0.85357 0.96921 0.96927 1.22082 0.98440 0.95539 0.99997 1.18618 0.91235 0.93315 0.93745 1.21261 1.01282 0.96400 1.35872 0.92650 1.24956 0.98197 0.95438 0.95377 1.69847 1.25082 1.19508 1.38744 0.86572 0.81499 0.82366 0.77794 1.19812 1.21034 1.21108 1.22012 0.96908 0.96426 1.00841 1.21560 0.96256 0.85222 0.96259 1.21681 0.92713 0.96055 1.04069 0.90409 0.90271 0.88227 0.90622 0.91934 0.91589 0.91570 0.91215 0.90698 0.76909 0.92019 0.92894 0.94342 0.87933 0.95471 0.93079 0.92998 0.92194 0.90283 0.92531 0.90255 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.45 101.05 1.06 0.15 16 2 S -0.27 -2.55 21.79 -107.50 -2.34 -4.89 16 3 C -0.05 -0.46 2.48 -26.73 -0.07 -0.52 16 4 H 0.09 0.83 6.50 -51.92 -0.34 0.49 16 5 C -0.11 -0.96 5.11 -26.73 -0.14 -1.10 16 6 C -0.12 -1.15 5.77 -26.73 -0.15 -1.30 16 7 C -0.13 -1.42 5.61 -26.73 -0.15 -1.57 16 8 C 0.17 1.94 2.75 -67.90 -0.19 1.76 16 9 H 0.09 1.15 7.65 -51.93 -0.40 0.75 16 10 N -0.75 -10.02 4.14 -58.65 -0.24 -10.26 16 11 C 0.71 12.34 8.26 -86.92 -0.72 11.62 16 12 O -0.60 -12.24 15.45 5.29 0.08 -12.16 16 13 N -0.62 -11.07 2.97 -178.23 -0.53 -11.60 16 14 C 0.11 1.94 6.42 -3.49 -0.02 1.92 16 15 C -0.12 -2.63 5.17 -26.39 -0.14 -2.77 16 16 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 17 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 20 N -0.89 -24.14 11.30 55.43 0.63 -23.51 16 21 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.12 -2.53 5.30 -26.62 -0.14 -2.67 16 26 C 0.13 2.39 6.44 -3.71 -0.02 2.36 16 27 C -0.11 -0.97 4.90 -26.71 -0.13 -1.10 16 28 H 0.08 0.53 7.14 -51.92 -0.37 0.16 16 29 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.77 7.60 -51.93 -0.39 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.39 4.86 4.35 -40.82 -0.18 4.68 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.78 5.64 -51.92 -0.29 0.49 16 40 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.46 7.00 -51.92 -0.36 1.10 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -28.95 379.94 -11.56 -40.51 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.47 Total: 5.02 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.39 Total: -4.49 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.14 Total: -45.37 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.34 Total: -4.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.95 -11.56 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.688 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds