Wall clock time and date at job start Tue Mar 31 2020 14:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 103.00086 * 2 1 4 4 H 1.09003 * 109.47056 * 305.00353 * 3 2 1 5 5 C 1.52998 * 109.46776 * 65.00617 * 3 2 1 6 6 C 1.52998 * 109.47024 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47170 * 300.00063 * 6 5 3 8 8 C 1.52995 * 109.47187 * 59.99660 * 7 6 5 9 9 H 1.08996 * 109.47402 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47170 * 60.00218 * 8 7 6 11 11 C 1.34779 * 119.99785 * 85.27165 * 10 8 7 12 12 O 1.21586 * 120.00241 * 354.80790 * 11 10 8 13 13 N 1.34775 * 119.99624 * 174.80374 * 11 10 8 14 14 C 1.46918 * 120.63657 * 4.94333 * 13 11 10 15 15 C 1.53617 * 108.54834 * 126.36594 * 14 13 11 16 16 C 1.53039 * 109.24327 * 54.85488 * 15 14 13 17 17 C 1.50700 * 109.45993 * 178.49091 * 16 15 14 18 18 H 1.07997 * 119.99854 * 120.07231 * 17 16 15 19 19 C 1.37873 * 120.00372 * 300.06742 * 17 16 15 20 20 N 1.31523 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00423 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46637 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47233 * 119.99824 * 21 19 17 24 24 H 1.48493 * 109.47135 * 240.00352 * 21 19 17 25 25 C 1.53035 * 109.54076 * 298.51557 * 16 15 14 26 26 C 1.46933 * 120.62967 * 185.21607 * 13 11 10 27 27 C 1.52995 * 109.46944 * 185.00534 * 3 2 1 28 28 H 1.09007 * 109.46573 * 299.99274 * 1 2 3 29 29 H 1.08999 * 109.47738 * 59.99244 * 1 2 3 30 30 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47510 * 59.99557 * 5 3 2 32 32 H 1.09004 * 109.47128 * 299.99848 * 5 3 2 33 33 H 1.09005 * 109.47245 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.47192 * 60.00142 * 6 5 3 35 35 H 1.08997 * 109.46459 * 299.99928 * 7 6 5 36 36 H 1.08998 * 109.46971 * 180.02562 * 7 6 5 37 37 H 0.97004 * 120.00186 * 265.00446 * 10 8 7 38 38 H 1.09003 * 109.58717 * 246.20331 * 14 13 11 39 39 H 1.09007 * 109.58382 * 6.61854 * 14 13 11 40 40 H 1.09008 * 109.63558 * 294.86203 * 15 14 13 41 41 H 1.09003 * 109.46206 * 174.74729 * 15 14 13 42 42 H 1.09003 * 109.44531 * 58.53001 * 16 15 14 43 43 H 0.96997 * 119.99785 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.49490 * 301.41468 * 25 16 15 45 45 H 1.08997 * 109.52740 * 181.33024 * 25 16 15 46 46 H 1.09009 * 109.58462 * 353.37779 * 26 13 11 47 47 H 1.08995 * 109.58710 * 113.65383 * 26 13 11 48 48 H 1.08995 * 109.47331 * 60.00201 * 27 3 2 49 49 H 1.09003 * 109.47096 * 299.99794 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 2.0865 3.8924 1.3072 7 6 3.6014 4.0667 1.1810 8 6 4.0805 3.4326 -0.1263 9 1 5.1597 3.5564 -0.2160 10 7 3.4179 4.0863 -1.2577 11 6 3.9311 5.2197 -1.7760 12 8 4.8881 5.7513 -1.2470 13 7 3.3834 5.7637 -2.8807 14 6 2.1628 5.1954 -3.4688 15 6 1.1215 6.3158 -3.6110 16 6 1.7277 7.4689 -4.4142 17 6 0.6979 8.5552 -4.5885 18 1 0.8890 9.5468 -4.2055 19 6 -0.4881 8.2834 -5.2368 20 7 -0.7210 7.0757 -5.7028 21 14 -1.7643 9.6302 -5.4534 22 1 -1.2637 10.8889 -4.8448 23 1 -2.0150 9.8464 -6.9010 24 1 -3.0283 9.2262 -4.7871 25 6 2.9401 8.0305 -3.6682 26 6 3.9989 6.9329 -3.5234 27 6 3.7369 1.9411 -0.1259 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2355 1.9148 2.1492 32 1 0.6637 2.2778 1.3971 33 1 1.7448 4.3442 2.2385 34 1 1.5935 4.3788 0.4655 35 1 4.0943 3.5803 2.0228 36 1 3.8462 5.1288 1.1813 37 1 2.6121 3.7013 -1.6362 38 1 2.3901 4.7774 -4.4495 39 1 1.7733 4.4131 -2.8173 40 1 0.8312 6.6737 -2.6231 41 1 0.2438 5.9320 -4.1311 42 1 2.0402 7.1045 -5.3928 43 1 -1.5556 6.8844 -6.1586 44 1 2.6328 8.3722 -2.6797 45 1 3.3575 8.8669 -4.2288 46 1 4.8214 7.2975 -2.9078 47 1 4.3752 6.6531 -4.5073 48 1 4.0783 1.4895 -1.0572 49 1 4.2296 1.4545 0.7159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336593203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:11 Heat of formation + Delta-G solvation = -62.994820 kcal Electronic energy + Delta-G solvation = -27036.156233 eV Core-core repulsion = 23508.752804 eV Total energy + Delta-G solvation = -3527.403429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63108 -39.70662 -38.21133 -35.36781 -34.79302 -32.95861 -31.89361 -31.69753 -30.68999 -29.49700 -27.88490 -24.89786 -24.07483 -23.74198 -23.43143 -22.07735 -20.64241 -20.11597 -19.17147 -18.29253 -17.53347 -17.12390 -16.57077 -16.49564 -16.23517 -15.92978 -15.38899 -15.17676 -14.94312 -14.88019 -14.55548 -14.38536 -14.34689 -14.08494 -14.05002 -13.76096 -13.39413 -13.20183 -13.14389 -13.03109 -12.82318 -12.80221 -12.55733 -12.42071 -12.15032 -11.99407 -11.79035 -11.54895 -11.48730 -11.22133 -11.17092 -10.98776 -10.78137 -10.72200 -10.40370 -10.10979 -9.37157 -8.66228 -8.08170 -6.21016 0.73053 1.39429 1.43136 1.52896 1.63545 1.74285 2.17943 2.43958 2.93160 3.18415 3.58164 3.63015 3.86989 4.06681 4.09785 4.14315 4.21780 4.30121 4.34429 4.36347 4.36650 4.39514 4.46188 4.57534 4.59395 4.60395 4.66180 4.80094 4.88964 4.89799 4.96776 5.00304 5.02124 5.07444 5.19895 5.21972 5.24647 5.30044 5.35821 5.43289 5.51664 5.63915 5.67167 5.98921 6.06756 6.13323 6.39853 6.88340 6.99069 7.46725 7.59440 8.95231 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003370 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.928764 B = 8307.718371 C = 9545.910247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.292 6.292 3 C -0.045 4.045 4 H 0.079 0.921 5 C -0.104 4.104 6 C -0.111 4.111 7 C -0.128 4.128 8 C 0.171 3.829 9 H 0.079 0.921 10 N -0.731 5.731 11 C 0.704 3.296 12 O -0.633 6.633 13 N -0.623 5.623 14 C 0.123 3.877 15 C -0.112 4.112 16 C 0.047 3.953 17 C -0.533 4.533 18 H 0.045 0.955 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 0.947 3.053 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.113 4.113 26 C 0.136 3.864 27 C -0.096 4.096 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.005 0.995 43 H 0.261 0.739 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -14.948 12.962 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.064 6.064 3 C -0.174 4.174 4 H 0.097 0.903 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.166 4.166 8 C 0.064 3.936 9 H 0.098 0.902 10 N -0.390 5.390 11 C 0.406 3.594 12 O -0.515 6.515 13 N -0.359 5.359 14 C 0.000 4.000 15 C -0.150 4.150 16 C 0.028 3.972 17 C -0.572 4.572 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.773 3.227 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.151 4.151 26 C 0.013 3.987 27 C -0.135 4.135 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.239 0.761 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.125 -15.622 13.214 21.093 hybrid contribution -2.165 1.870 -0.708 2.947 sum 2.960 -13.751 12.506 18.822 Atomic orbital electron populations 1.23459 0.92105 1.07280 1.05643 1.86899 1.09831 1.11649 1.98002 1.23136 0.99854 0.92936 1.01490 0.90301 1.21819 1.01440 0.94930 0.96144 1.21465 0.95610 0.96057 1.01962 1.21909 0.96636 1.00593 0.97497 1.20835 0.97126 0.90852 0.84746 0.90246 1.45390 1.31386 1.25856 1.36329 1.15989 0.82133 0.81218 0.80079 1.90824 1.32081 1.64821 1.63754 1.47396 1.28394 1.32383 1.27742 1.21800 0.84123 0.95941 0.98093 1.21835 0.98712 0.96146 0.98342 1.18586 0.91843 0.93439 0.93298 1.21575 1.02484 0.96825 1.36277 0.93627 1.25600 0.99805 0.97349 0.95191 1.69949 1.25518 1.20677 1.38934 0.85679 0.79311 0.79968 0.77718 1.19790 1.20645 1.20598 1.21858 0.96438 0.97284 0.99569 1.21442 0.95385 0.84876 0.97016 1.21596 0.93053 0.94107 1.04708 0.89482 0.90292 0.87145 0.89603 0.91231 0.90834 0.93494 0.88973 0.93668 0.76112 0.91526 0.89871 0.95653 0.90244 0.97717 0.92941 0.94294 0.91813 0.90218 0.91310 0.90406 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 10.45 113.37 1.19 -0.29 16 2 S -0.29 -4.93 21.79 -56.49 -1.23 -6.16 16 3 C -0.05 -0.73 2.48 30.59 0.08 -0.65 16 4 H 0.08 1.37 6.50 -2.39 -0.02 1.35 16 5 C -0.10 -1.52 5.11 30.59 0.16 -1.36 16 6 C -0.11 -2.02 5.77 30.60 0.18 -1.85 16 7 C -0.13 -2.58 5.61 30.59 0.17 -2.41 16 8 C 0.17 3.63 2.75 45.01 0.12 3.76 16 9 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 10 N -0.73 -18.84 4.14 -457.73 -1.90 -20.73 16 11 C 0.70 24.13 8.26 179.05 1.48 25.61 16 12 O -0.63 -25.54 15.45 -3.99 -0.06 -25.60 16 13 N -0.62 -21.90 2.97 -836.07 -2.48 -24.38 16 14 C 0.12 4.19 6.42 86.51 0.56 4.74 16 15 C -0.11 -4.86 5.17 30.81 0.16 -4.70 16 16 C 0.05 2.24 2.06 -11.52 -0.02 2.21 16 17 C -0.53 -28.65 8.56 25.60 0.22 -28.43 16 18 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 19 C 0.02 1.04 5.30 84.65 0.45 1.49 16 20 N -0.91 -49.62 11.30 21.45 0.24 -49.38 16 21 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 25 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 26 C 0.14 4.95 6.44 86.36 0.56 5.51 16 27 C -0.10 -1.55 4.90 30.61 0.15 -1.40 16 28 H 0.09 0.95 7.14 -2.39 -0.02 0.93 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 0.95 6.92 -2.38 -0.02 0.93 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 34 H 0.05 1.04 7.60 -2.39 -0.02 1.02 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.40 9.22 4.35 -92.71 -0.40 8.82 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.08 2.31 5.64 -2.38 -0.01 2.30 16 40 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.08 3.86 6.03 -2.39 -0.01 3.85 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 44 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 45 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.08 2.92 7.00 -2.38 -0.02 2.90 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -62.36 379.94 2.72 -59.64 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.52 Total: 24.34 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.59 Total: -2.28 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -4.13 Total: -94.49 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.23 Total: -6.16 kcal Total: -62.36 2.72 -59.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.352 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds