Wall clock time and date at job start Tue Mar 31 2020 14:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81401 * 103.00129 * 2 1 4 4 H 1.08994 * 109.47150 * 55.00013 * 3 2 1 5 5 C 1.53004 * 109.47151 * 295.00275 * 3 2 1 6 6 C 1.53001 * 109.47110 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.46794 * 60.00064 * 6 5 3 8 8 C 1.52996 * 109.47668 * 299.99955 * 7 6 5 9 9 H 1.09004 * 109.47301 * 300.00559 * 8 7 6 10 10 N 1.46494 * 109.47821 * 180.02562 * 8 7 6 11 11 C 1.34774 * 120.00251 * 84.99249 * 10 8 7 12 12 O 1.21590 * 119.99895 * 355.04030 * 11 10 8 13 13 N 1.34779 * 120.00166 * 175.03089 * 11 10 8 14 14 C 1.46924 * 120.63086 * 185.00229 * 13 11 10 15 15 C 1.52759 * 109.00720 * 233.58294 * 14 13 11 16 16 C 1.53044 * 109.38388 * 305.58973 * 15 14 13 17 17 C 1.50697 * 109.44689 * 181.25199 * 16 15 14 18 18 H 1.07996 * 120.00106 * 245.35203 * 17 16 15 19 19 C 1.37881 * 120.00154 * 65.35553 * 17 16 15 20 20 N 1.31514 * 120.00029 * 355.13671 * 19 17 16 21 21 Si 1.86798 * 120.00151 * 175.13055 * 19 17 16 22 22 H 1.48499 * 109.47011 * 94.99987 * 21 19 17 23 23 H 1.48500 * 109.47332 * 215.00248 * 21 19 17 24 24 H 1.48504 * 109.47118 * 335.00147 * 21 19 17 25 25 C 1.53039 * 109.54055 * 61.23852 * 16 15 14 26 26 C 1.46921 * 120.62943 * 5.28118 * 13 11 10 27 27 C 1.52998 * 109.47154 * 59.99834 * 8 7 6 28 28 H 1.09001 * 109.46765 * 299.99922 * 1 2 3 29 29 H 1.08995 * 109.47195 * 59.99556 * 1 2 3 30 30 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46940 * 59.99894 * 5 3 2 32 32 H 1.09004 * 109.47339 * 300.00180 * 5 3 2 33 33 H 1.08994 * 109.46773 * 300.00358 * 6 5 3 34 34 H 1.08997 * 109.46889 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47668 * 60.00281 * 7 6 5 36 36 H 1.08998 * 109.47300 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99854 * 264.99940 * 10 8 7 38 38 H 1.09002 * 109.58370 * 353.41834 * 14 13 11 39 39 H 1.08998 * 109.58778 * 113.84336 * 14 13 11 40 40 H 1.08994 * 109.56685 * 185.55003 * 15 14 13 41 41 H 1.09001 * 109.36227 * 65.49749 * 15 14 13 42 42 H 1.09002 * 109.45702 * 301.21499 * 16 15 14 43 43 H 0.96997 * 120.00358 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.49579 * 178.68196 * 25 16 15 45 45 H 1.09010 * 109.52080 * 58.60173 * 25 16 15 46 46 H 1.09008 * 109.58615 * 246.15808 * 26 13 11 47 47 H 1.09007 * 109.58952 * 6.43772 * 26 13 11 48 48 H 1.09001 * 109.47506 * 180.02562 * 27 8 7 49 49 H 1.09004 * 109.46949 * 60.00181 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3071 7 6 3.6012 4.0666 -1.1811 8 6 4.0807 3.4326 0.1261 9 1 3.5878 3.9188 0.9680 10 7 5.5310 3.5998 0.2470 11 6 6.0375 4.7369 0.7634 12 8 5.2971 5.6593 1.0452 13 7 7.3648 4.8517 0.9677 14 6 7.9203 6.0398 1.6299 15 6 9.0115 6.6384 0.7442 16 6 10.0466 5.5603 0.4147 17 6 11.1399 6.1570 -0.4336 18 1 11.2771 5.8226 -1.4513 19 6 11.9650 7.1300 0.0894 20 7 11.7389 7.6058 1.2945 21 14 13.4041 7.7723 -0.9134 22 1 12.9953 9.0059 -1.6320 23 1 14.5402 8.0804 -0.0080 24 1 13.8210 6.7413 -1.8976 25 6 9.3719 4.4200 -0.3512 26 6 8.2842 3.7938 0.5271 27 6 3.7370 1.9417 0.1259 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.6635 2.2779 -1.3969 32 1 2.2353 1.9150 -2.1492 33 1 1.5936 4.3787 -0.4652 34 1 1.7446 4.3443 -2.2382 35 1 4.0942 3.5804 -2.0230 36 1 3.8462 5.1287 -1.1814 37 1 6.1268 2.8921 -0.0447 38 1 7.1308 6.7757 1.7826 39 1 8.3487 5.7557 2.5911 40 1 9.4974 7.4609 1.2691 41 1 8.5652 7.0084 -0.1788 42 1 10.4748 5.1733 1.3394 43 1 12.3196 8.2900 1.6626 44 1 10.1142 3.6637 -0.6060 45 1 8.9222 4.8105 -1.2643 46 1 8.7429 3.3227 1.3965 47 1 7.7343 3.0468 -0.0456 48 1 4.0781 1.4900 1.0574 49 1 4.2298 1.4553 -0.7160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336593205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:18 Heat of formation + Delta-G solvation = -52.213113 kcal Electronic energy + Delta-G solvation = -26259.073220 eV Core-core repulsion = 22732.137321 eV Total energy + Delta-G solvation = -3526.935899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22883 -38.59741 -36.74900 -34.21749 -33.42418 -31.17445 -31.12566 -30.42957 -29.55116 -28.68036 -26.06765 -23.39076 -23.03244 -22.69609 -21.91180 -20.37617 -20.11781 -18.80566 -17.70263 -16.95173 -16.33717 -15.82130 -15.47544 -15.05103 -14.81195 -14.59450 -14.43256 -14.31642 -13.97779 -13.84008 -13.61446 -13.23706 -13.11674 -12.82160 -12.77105 -12.61526 -12.30089 -12.17026 -11.86230 -11.85433 -11.47013 -11.12617 -11.05325 -10.95458 -10.89697 -10.74444 -10.65316 -10.41546 -10.07188 -10.04913 -9.72790 -9.53905 -9.17116 -8.95147 -8.88936 -8.36862 -8.04313 -7.87957 -6.01759 -4.07330 1.29196 2.20392 2.98391 3.28975 3.36549 3.39452 3.56317 4.12135 4.27439 4.42073 4.46103 4.63854 4.72728 4.77164 4.82462 4.87611 5.04888 5.08415 5.18395 5.26494 5.28665 5.34813 5.37141 5.58715 5.68073 5.69895 5.75689 5.77287 5.87227 5.90805 6.04784 6.12391 6.19298 6.27693 6.44312 6.50877 6.61944 6.69340 6.82733 6.99154 7.15539 7.25005 7.50920 7.71188 7.93647 8.04871 8.32361 8.41332 8.95961 8.96681 9.57497 11.04505 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.002263 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.376095 B =12372.008098 C =12516.942066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.045 4.045 4 H 0.090 0.910 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.133 4.133 8 C 0.174 3.826 9 H 0.086 0.914 10 N -0.749 5.749 11 C 0.706 3.294 12 O -0.600 6.600 13 N -0.618 5.618 14 C 0.126 3.874 15 C -0.121 4.121 16 C 0.049 3.951 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.124 4.124 26 C 0.113 3.887 27 C -0.107 4.107 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 -13.851 -2.731 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.174 4.174 4 H 0.108 0.892 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.172 4.172 8 C 0.066 3.934 9 H 0.104 0.896 10 N -0.406 5.406 11 C 0.408 3.592 12 O -0.479 6.479 13 N -0.354 5.354 14 C 0.004 3.996 15 C -0.160 4.160 16 C 0.031 3.969 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.162 4.162 26 C -0.010 4.010 27 C -0.146 4.146 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.231 0.769 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.437 -13.976 -2.331 24.868 hybrid contribution 0.309 1.013 -0.704 1.272 sum -20.128 -12.963 -3.035 24.132 Atomic orbital electron populations 1.23389 0.94262 1.06378 1.04969 1.86913 1.07309 1.11372 1.97940 1.23101 0.99551 0.93183 1.01551 0.89163 1.21907 1.00819 0.96268 0.96381 1.21505 0.96237 0.95119 1.02435 1.21991 0.95165 1.02427 0.97594 1.20619 0.80300 0.93860 0.98582 0.89562 1.45321 1.07015 1.19160 1.69112 1.15850 0.82483 0.82598 0.78283 1.90859 1.58415 1.39123 1.59516 1.47444 1.03667 1.22448 1.61855 1.21670 0.97000 0.85559 0.95325 1.21934 0.94423 1.01601 0.98028 1.18632 0.92400 0.90400 0.95472 1.21171 1.14092 1.21071 0.98857 0.92778 1.24972 0.97645 0.96329 0.95043 1.69876 1.38218 1.28727 1.15953 0.86621 0.82450 0.79122 0.80038 1.20844 1.21213 1.19949 1.22014 0.96033 0.99834 0.98319 1.21711 0.91807 0.89076 0.98400 1.21597 0.92863 0.96305 1.03834 0.90520 0.90398 0.88198 0.91883 0.90514 0.91632 0.91252 0.91725 0.90623 0.76921 0.90565 0.92590 0.88350 0.94369 0.95262 0.92981 0.92113 0.92976 0.91937 0.92296 0.90272 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.45 101.05 1.06 0.37 16 2 S -0.26 -2.23 21.79 -107.50 -2.34 -4.57 16 3 C -0.04 -0.35 2.65 -26.73 -0.07 -0.43 16 4 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -0.83 5.11 -26.73 -0.14 -0.96 16 6 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 7 C -0.13 -1.42 5.49 -26.74 -0.15 -1.57 16 8 C 0.17 1.94 2.42 -67.94 -0.16 1.78 16 9 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 10 N -0.75 -9.87 4.99 -58.68 -0.29 -10.17 16 11 C 0.71 12.48 8.26 -86.92 -0.72 11.76 16 12 O -0.60 -12.55 15.43 5.29 0.08 -12.47 16 13 N -0.62 -11.16 2.98 -178.76 -0.53 -11.69 16 14 C 0.13 2.56 6.41 -3.93 -0.03 2.53 16 15 C -0.12 -2.81 5.18 -26.83 -0.14 -2.95 16 16 C 0.05 1.17 2.01 -91.73 -0.18 0.99 16 17 C -0.51 -13.67 8.49 -34.44 -0.29 -13.96 16 18 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 19 C 0.06 1.67 5.36 -17.82 -0.10 1.57 16 20 N -0.89 -24.81 11.53 55.43 0.64 -24.17 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 26 C 0.11 1.80 6.39 -3.71 -0.02 1.78 16 27 C -0.11 -0.94 4.68 -26.73 -0.13 -1.07 16 28 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 0.38 7.14 -51.93 -0.37 0.01 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.39 6.92 -51.93 -0.36 0.03 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.39 4.43 6.09 -40.82 -0.25 4.18 16 38 H 0.08 1.58 6.99 -51.93 -0.36 1.22 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 2.54 6.29 -51.93 -0.33 2.21 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 46 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 47 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -30.07 384.74 -11.70 -41.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.66 Total: 3.32 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.36 Total: -3.76 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.19 Total: -46.03 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.34 Total: -4.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.07 -11.70 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.448 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds