Wall clock time and date at job start Tue Mar 31 2020 14:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81401 * 103.00129 * 2 1 4 4 H 1.08994 * 109.47150 * 55.00013 * 3 2 1 5 5 C 1.53004 * 109.47151 * 295.00275 * 3 2 1 6 6 C 1.53001 * 109.47110 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.46794 * 60.00064 * 6 5 3 8 8 C 1.52996 * 109.47668 * 299.99955 * 7 6 5 9 9 H 1.09004 * 109.47301 * 300.00559 * 8 7 6 10 10 N 1.46494 * 109.47821 * 180.02562 * 8 7 6 11 11 C 1.34774 * 120.00251 * 84.99249 * 10 8 7 12 12 O 1.21590 * 119.99895 * 355.04030 * 11 10 8 13 13 N 1.34779 * 120.00166 * 175.03089 * 11 10 8 14 14 C 1.46924 * 120.63086 * 185.00229 * 13 11 10 15 15 C 1.52759 * 109.00720 * 233.58294 * 14 13 11 16 16 C 1.53044 * 109.38388 * 305.58973 * 15 14 13 17 17 C 1.50697 * 109.44689 * 181.25199 * 16 15 14 18 18 H 1.07996 * 120.00106 * 245.35203 * 17 16 15 19 19 C 1.37881 * 120.00154 * 65.35553 * 17 16 15 20 20 N 1.31514 * 120.00029 * 355.13671 * 19 17 16 21 21 Si 1.86798 * 120.00151 * 175.13055 * 19 17 16 22 22 H 1.48499 * 109.47011 * 94.99987 * 21 19 17 23 23 H 1.48500 * 109.47332 * 215.00248 * 21 19 17 24 24 H 1.48504 * 109.47118 * 335.00147 * 21 19 17 25 25 C 1.53039 * 109.54055 * 61.23852 * 16 15 14 26 26 C 1.46921 * 120.62943 * 5.28118 * 13 11 10 27 27 C 1.52998 * 109.47154 * 59.99834 * 8 7 6 28 28 H 1.09001 * 109.46765 * 299.99922 * 1 2 3 29 29 H 1.08995 * 109.47195 * 59.99556 * 1 2 3 30 30 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46940 * 59.99894 * 5 3 2 32 32 H 1.09004 * 109.47339 * 300.00180 * 5 3 2 33 33 H 1.08994 * 109.46773 * 300.00358 * 6 5 3 34 34 H 1.08997 * 109.46889 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47668 * 60.00281 * 7 6 5 36 36 H 1.08998 * 109.47300 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99854 * 264.99940 * 10 8 7 38 38 H 1.09002 * 109.58370 * 353.41834 * 14 13 11 39 39 H 1.08998 * 109.58778 * 113.84336 * 14 13 11 40 40 H 1.08994 * 109.56685 * 185.55003 * 15 14 13 41 41 H 1.09001 * 109.36227 * 65.49749 * 15 14 13 42 42 H 1.09002 * 109.45702 * 301.21499 * 16 15 14 43 43 H 0.96997 * 120.00358 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.49579 * 178.68196 * 25 16 15 45 45 H 1.09010 * 109.52080 * 58.60173 * 25 16 15 46 46 H 1.09008 * 109.58615 * 246.15808 * 26 13 11 47 47 H 1.09007 * 109.58952 * 6.43772 * 26 13 11 48 48 H 1.09001 * 109.47506 * 180.02562 * 27 8 7 49 49 H 1.09004 * 109.46949 * 60.00181 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3071 7 6 3.6012 4.0666 -1.1811 8 6 4.0807 3.4326 0.1261 9 1 3.5878 3.9188 0.9680 10 7 5.5310 3.5998 0.2470 11 6 6.0375 4.7369 0.7634 12 8 5.2971 5.6593 1.0452 13 7 7.3648 4.8517 0.9677 14 6 7.9203 6.0398 1.6299 15 6 9.0115 6.6384 0.7442 16 6 10.0466 5.5603 0.4147 17 6 11.1399 6.1570 -0.4336 18 1 11.2771 5.8226 -1.4513 19 6 11.9650 7.1300 0.0894 20 7 11.7389 7.6058 1.2945 21 14 13.4041 7.7723 -0.9134 22 1 12.9953 9.0059 -1.6320 23 1 14.5402 8.0804 -0.0080 24 1 13.8210 6.7413 -1.8976 25 6 9.3719 4.4200 -0.3512 26 6 8.2842 3.7938 0.5271 27 6 3.7370 1.9417 0.1259 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.6635 2.2779 -1.3969 32 1 2.2353 1.9150 -2.1492 33 1 1.5936 4.3787 -0.4652 34 1 1.7446 4.3443 -2.2382 35 1 4.0942 3.5804 -2.0230 36 1 3.8462 5.1287 -1.1814 37 1 6.1268 2.8921 -0.0447 38 1 7.1308 6.7757 1.7826 39 1 8.3487 5.7557 2.5911 40 1 9.4974 7.4609 1.2691 41 1 8.5652 7.0084 -0.1788 42 1 10.4748 5.1733 1.3394 43 1 12.3196 8.2900 1.6626 44 1 10.1142 3.6637 -0.6060 45 1 8.9222 4.8105 -1.2643 46 1 8.7429 3.3227 1.3965 47 1 7.7343 3.0468 -0.0456 48 1 4.0781 1.4900 1.0574 49 1 4.2298 1.4553 -0.7160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336593205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:17 Heat of formation + Delta-G solvation = -67.961559 kcal Electronic energy + Delta-G solvation = -26259.756124 eV Core-core repulsion = 22732.137321 eV Total energy + Delta-G solvation = -3527.618803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53395 -39.61840 -38.26012 -35.51580 -35.09653 -32.91067 -31.90326 -31.87190 -30.41991 -29.39673 -27.86772 -24.91342 -24.09299 -23.81786 -23.17923 -21.63504 -21.20844 -20.25060 -19.09611 -18.32909 -17.84137 -16.93796 -16.53992 -16.42082 -16.17782 -15.59592 -15.47373 -15.29153 -15.07673 -14.87794 -14.59612 -14.48065 -14.31884 -14.19687 -14.08012 -13.71111 -13.49468 -13.38384 -13.01371 -12.88459 -12.82953 -12.56061 -12.47456 -12.27866 -12.15085 -11.96091 -11.79057 -11.63736 -11.55286 -11.39716 -11.21732 -10.93643 -10.79526 -10.70191 -10.40722 -10.12967 -9.37886 -8.66045 -8.07901 -6.20516 0.70983 1.41018 1.43028 1.52574 1.66316 1.71396 2.16129 2.44377 2.92077 3.19494 3.61883 3.73782 3.83163 4.05061 4.11857 4.12338 4.25531 4.32441 4.34166 4.36535 4.38247 4.39778 4.41109 4.50731 4.59600 4.61006 4.72989 4.86203 4.89840 4.91351 4.97311 5.00908 5.02102 5.07705 5.19753 5.20861 5.23711 5.28176 5.38267 5.46674 5.51899 5.60087 5.66672 5.98199 6.08000 6.10920 6.39226 6.91366 7.02039 7.47291 7.58668 8.96553 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.002263 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.376095 B =12372.008098 C =12516.942066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.301 6.301 3 C -0.038 4.038 4 H 0.090 0.910 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.129 4.129 8 C 0.174 3.826 9 H 0.067 0.933 10 N -0.731 5.731 11 C 0.704 3.296 12 O -0.636 6.636 13 N -0.622 5.622 14 C 0.139 3.861 15 C -0.109 4.109 16 C 0.045 3.955 17 C -0.531 4.531 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 0.950 3.050 22 H -0.282 1.282 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.116 4.116 26 C 0.118 3.882 27 C -0.096 4.096 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.020 0.980 42 H 0.006 0.994 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.876 -16.089 -3.909 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.072 6.072 3 C -0.167 4.167 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.147 4.147 7 C -0.168 4.168 8 C 0.067 3.933 9 H 0.085 0.915 10 N -0.389 5.389 11 C 0.405 3.595 12 O -0.518 6.518 13 N -0.358 5.358 14 C 0.016 3.984 15 C -0.148 4.148 16 C 0.027 3.973 17 C -0.570 4.570 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.555 5.555 21 Si 0.776 3.224 22 H -0.208 1.208 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.154 4.154 26 C -0.004 4.004 27 C -0.135 4.135 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.246 0.754 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.668 -16.269 -3.535 27.325 hybrid contribution 0.643 1.705 -0.340 1.853 sum -21.025 -14.564 -3.875 25.869 Atomic orbital electron populations 1.23454 0.91496 1.07323 1.05845 1.87035 1.10450 1.11717 1.98041 1.23024 0.98715 0.92953 1.02011 0.89208 1.21855 1.01822 0.94969 0.95922 1.21463 0.94209 0.96210 1.02862 1.21928 0.97182 1.00223 0.97461 1.20729 0.78752 0.95610 0.98178 0.91467 1.45214 1.08171 1.17861 1.67621 1.15997 0.81981 0.83253 0.78258 1.90835 1.59205 1.40770 1.61037 1.47391 1.04327 1.22171 1.61944 1.21312 0.95687 0.86451 0.94965 1.21688 0.95009 1.00823 0.97240 1.18610 0.92163 0.91875 0.94661 1.21569 1.15061 1.21213 0.99114 0.92984 1.25728 1.00115 0.96772 0.96087 1.70006 1.39025 1.29171 1.17284 0.85667 0.79467 0.78504 0.78736 1.20796 1.20945 1.19098 1.21870 0.97066 0.98599 0.97887 1.21804 0.91005 0.88817 0.98820 1.21488 0.93831 0.94031 1.04173 0.89881 0.89284 0.87243 0.90316 0.90319 0.91935 0.90255 0.90902 0.93939 0.75434 0.91514 0.92152 0.91490 0.96128 0.97561 0.93087 0.90760 0.93721 0.90685 0.88113 0.90394 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.45 113.37 1.19 0.21 16 2 S -0.30 -4.42 21.79 -56.49 -1.23 -5.65 16 3 C -0.04 -0.52 2.65 30.59 0.08 -0.44 16 4 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.11 -1.26 5.11 30.60 0.16 -1.10 16 6 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 7 C -0.13 -2.63 5.49 30.59 0.17 -2.46 16 8 C 0.17 3.68 2.42 44.99 0.11 3.79 16 9 H 0.07 1.72 7.65 -2.39 -0.02 1.70 16 10 N -0.73 -18.11 4.99 -457.83 -2.28 -20.39 16 11 C 0.70 24.46 8.26 179.05 1.48 25.93 16 12 O -0.64 -27.01 15.43 -4.00 -0.06 -27.08 16 13 N -0.62 -22.06 2.98 -837.74 -2.49 -24.55 16 14 C 0.14 5.74 6.41 86.22 0.55 6.29 16 15 C -0.11 -5.21 5.18 30.53 0.16 -5.06 16 16 C 0.05 2.18 2.01 -11.51 -0.02 2.16 16 17 C -0.53 -28.62 8.49 25.60 0.22 -28.40 16 18 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 19 C 0.01 0.64 5.36 84.66 0.45 1.10 16 20 N -0.92 -52.37 11.53 21.45 0.25 -52.12 16 21 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.12 -4.32 5.30 30.67 0.16 -4.15 16 26 C 0.12 3.49 6.39 86.36 0.55 4.04 16 27 C -0.10 -1.49 4.68 30.59 0.14 -1.35 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.59 7.14 -2.39 -0.02 0.57 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.72 6.92 -2.38 -0.02 0.71 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.41 7.93 6.09 -92.71 -0.56 7.36 16 38 H 0.07 2.87 6.99 -2.39 -0.02 2.85 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 3.63 6.29 -2.39 -0.02 3.61 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.10 2.15 5.64 -2.38 -0.01 2.14 16 48 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 49 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -66.92 384.74 2.13 -64.79 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.36 Total: 20.45 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.58 Total: -0.84 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -4.53 Total: -97.06 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.23 Total: -5.65 kcal Total: -66.92 2.13 -64.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.173 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds