Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30818 * 125.81558 * 2 1 4 4 N 1.40091 * 108.25715 * 180.28120 * 3 2 1 5 5 C 1.39810 * 126.10664 * 179.74059 * 4 3 2 6 6 C 1.38944 * 119.68835 * 334.97885 * 5 4 3 7 7 C 1.38414 * 119.10746 * 180.02562 * 6 5 4 8 8 C 1.38795 * 118.48401 * 359.97438 * 7 6 5 9 9 C 1.38124 * 119.29388 * 0.02562 * 8 7 6 10 10 N 1.31894 * 120.84272 * 359.71987 * 9 8 7 11 11 C 1.35846 * 107.79037 * 359.71839 * 4 3 2 12 12 C 1.50700 * 126.19178 * 179.97438 * 11 4 3 13 13 C 1.35282 * 107.61611 * 0.02562 * 11 4 3 14 14 C 1.50701 * 126.01695 * 180.02562 * 13 11 4 15 15 N 1.46897 * 109.47192 * 89.99492 * 14 13 11 16 16 C 1.46899 * 111.00005 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47225 * 185.35234 * 16 15 14 18 18 C 1.50704 * 115.55231 * 65.04667 * 17 16 15 19 19 H 1.07999 * 120.00258 * 265.44776 * 18 17 16 20 20 C 1.37878 * 119.99829 * 85.44184 * 18 17 16 21 21 N 1.31516 * 119.99854 * 353.60603 * 20 18 17 22 22 Si 1.86800 * 119.99926 * 173.59862 * 20 18 17 23 23 H 1.48504 * 109.47077 * 60.00517 * 22 20 18 24 24 H 1.48500 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47430 * 300.00761 * 22 20 18 26 26 C 1.52998 * 117.49915 * 279.38181 * 17 16 15 27 27 C 1.52996 * 117.50119 * 210.71993 * 17 16 15 28 28 H 1.09002 * 109.47187 * 270.18358 * 1 2 3 29 29 H 1.09000 * 109.47534 * 30.18496 * 1 2 3 30 30 H 1.09007 * 109.47392 * 150.18761 * 1 2 3 31 31 H 1.07998 * 120.44652 * 0.02562 * 6 5 4 32 32 H 1.08004 * 120.75719 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.35419 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.58038 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47324 * 270.02791 * 12 11 4 36 36 H 1.08997 * 109.47258 * 30.02672 * 12 11 4 37 37 H 1.09001 * 109.47137 * 150.02658 * 12 11 4 38 38 H 1.08994 * 109.47013 * 209.99370 * 14 13 11 39 39 H 1.08998 * 109.46585 * 329.99445 * 14 13 11 40 40 H 1.00903 * 111.00024 * 303.95713 * 15 14 13 41 41 H 1.08996 * 109.47239 * 305.34739 * 16 15 14 42 42 H 1.08991 * 109.47294 * 65.35326 * 16 15 14 43 43 H 0.97002 * 119.99427 * 179.97438 * 21 20 18 44 44 H 1.09003 * 117.49967 * 359.97438 * 26 17 16 45 45 H 1.08998 * 117.50422 * 145.02157 * 26 17 16 46 46 H 1.08995 * 117.50082 * 214.98037 * 27 17 16 47 47 H 1.09003 * 117.49651 * 359.97210 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0608 0.0000 4 7 3.6081 0.6382 -0.0065 5 6 4.7344 1.4666 -0.0137 6 6 4.6379 2.7547 -0.5256 7 6 5.7606 3.5643 -0.5274 8 6 6.9451 3.0546 -0.0141 9 6 6.9683 1.7645 0.4787 10 7 5.8808 1.0182 0.4715 11 6 3.6137 -0.7203 -0.0041 12 6 4.8335 -1.6052 -0.0097 13 6 2.3260 -1.1349 0.0031 14 6 1.8561 -2.5668 0.0086 15 7 1.7103 -3.0290 1.3953 16 6 1.2532 -4.4243 1.4399 17 6 0.9855 -4.8273 2.8914 18 6 -0.1423 -4.0949 3.5719 19 1 0.0651 -3.2194 4.1693 20 6 -1.4388 -4.5426 3.4316 21 7 -1.7078 -5.5300 2.6057 22 14 -2.8132 -3.7467 4.4150 23 1 -2.8933 -2.3033 4.0751 24 1 -4.1028 -4.4054 4.0861 25 1 -2.5360 -3.8987 5.8659 26 6 2.1896 -5.2227 3.7483 27 6 1.2057 -6.2932 3.2698 28 1 -0.3634 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 3.6997 3.1193 -0.9169 32 1 5.7156 4.5701 -0.9184 33 1 7.8392 3.6602 -0.0002 34 1 7.8876 1.3630 0.8787 35 1 5.1218 -1.8200 -1.0387 36 1 5.6530 -1.0975 0.4988 37 1 4.6078 -2.5382 0.5068 38 1 0.8947 -2.6356 -0.5003 39 1 2.5859 -3.1905 -0.5075 40 1 2.5723 -2.9146 1.9071 41 1 0.3358 -4.5248 0.8599 42 1 2.0220 -5.0721 1.0189 43 1 -2.6199 -5.8451 2.5073 44 1 3.1726 -5.1962 3.2779 45 1 2.1661 -4.9536 4.8043 46 1 0.5352 -6.7279 4.0110 47 1 1.5410 -6.9708 2.4844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338442646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = 146.802431 kcal Electronic energy + Delta-G solvation = -27163.185607 eV Core-core repulsion = 23541.728469 eV Total energy + Delta-G solvation = -3621.457138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68185 -40.12061 -36.98293 -34.90613 -34.02513 -32.81322 -32.05494 -31.73681 -30.48652 -28.14016 -27.46790 -25.83746 -25.02856 -23.93822 -23.33247 -22.44406 -20.95050 -19.89965 -19.43565 -18.83714 -17.79473 -16.73124 -16.34982 -15.97467 -15.53042 -14.99277 -14.69601 -14.37072 -14.30559 -14.06329 -13.67058 -13.54458 -13.41251 -13.24221 -13.09194 -12.97078 -12.46613 -12.42586 -12.28413 -12.17023 -11.80508 -11.47188 -11.24906 -11.08186 -10.84700 -10.60805 -10.50136 -10.37525 -10.34378 -10.09794 -10.03055 -9.77074 -9.38937 -8.76780 -8.71585 -8.29439 -8.19266 -7.93542 -7.39858 -5.88300 -3.88985 0.49609 0.85658 1.94665 2.17325 2.82312 3.41262 3.44786 3.46532 3.48994 4.07863 4.32873 4.53701 4.54235 4.66851 4.71892 4.85831 4.93968 5.13570 5.23548 5.36222 5.37267 5.42237 5.55067 5.55934 5.58647 5.61400 5.78270 5.80566 5.90216 6.02289 6.09737 6.14216 6.21408 6.23167 6.29384 6.37408 6.42826 6.57965 6.72087 6.77073 6.81357 6.96802 7.14896 7.19146 7.38288 7.54770 7.67182 7.85706 8.04668 8.06691 8.26849 8.64869 9.09759 9.73572 11.21639 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002924 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.315039 B = 9574.239222 C =10336.988734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.122 3.878 3 N -0.297 5.297 4 N -0.336 5.336 5 C 0.383 3.617 6 C -0.166 4.166 7 C -0.053 4.053 8 C -0.192 4.192 9 C 0.130 3.870 10 N -0.503 5.503 11 C 0.108 3.892 12 C -0.101 4.101 13 C -0.208 4.208 14 C 0.137 3.863 15 N -0.662 5.662 16 C 0.108 3.892 17 C 0.055 3.945 18 C -0.467 4.467 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.887 5.887 22 Si 0.886 3.114 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.216 4.216 27 C -0.159 4.159 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.328 0.672 41 H 0.077 0.923 42 H -0.007 1.007 43 H 0.257 0.743 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.795 14.412 -9.586 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 N -0.116 5.116 4 N -0.114 5.114 5 C 0.156 3.844 6 C -0.189 4.189 7 C -0.080 4.080 8 C -0.213 4.213 9 C -0.028 4.028 10 N -0.216 5.216 11 C -0.014 4.014 12 C -0.159 4.159 13 C -0.218 4.218 14 C 0.007 3.993 15 N -0.292 5.292 16 C -0.021 4.021 17 C 0.055 3.945 18 C -0.505 4.505 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.525 5.525 22 Si 0.715 3.285 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.254 4.254 27 C -0.197 4.197 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.145 0.855 41 H 0.095 0.905 42 H 0.011 0.989 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.109 15.000 -9.261 23.218 hybrid contribution -0.008 -0.105 0.016 0.107 sum 15.101 14.894 -9.245 23.138 Atomic orbital electron populations 1.20258 0.85684 1.02994 1.04193 1.22477 0.97265 0.89861 0.95089 1.77399 0.84208 1.22252 1.27764 1.45450 1.03589 1.03542 1.58772 1.17728 0.84632 0.88101 0.93925 1.21691 1.01052 0.93543 1.02616 1.21515 0.91645 0.99695 0.95118 1.22126 0.99422 0.97473 1.02303 1.22585 0.95126 0.90479 0.94601 1.67006 0.98862 1.38576 1.17193 1.21173 0.97163 0.83396 0.99703 1.20674 0.94217 0.98028 1.03003 1.19894 0.90608 0.96990 1.14304 1.20152 0.99499 0.88012 0.91673 1.60296 1.35617 1.22994 1.10304 1.21550 0.97371 0.84870 0.98286 1.18799 0.92725 0.92963 0.90059 1.20271 0.89710 1.11397 1.29168 0.92399 1.24912 0.98280 0.95062 0.95104 1.70001 1.19462 1.27435 1.35565 0.86759 0.81429 0.79689 0.80664 1.20203 1.21596 1.20583 1.22986 0.93800 1.08498 1.00108 1.22515 1.01511 0.93318 1.02371 0.89268 0.91348 0.89748 0.83737 0.84052 0.84227 0.81772 0.91020 0.88189 0.90056 0.90363 0.95831 0.85458 0.90491 0.98902 0.93349 0.92267 0.90640 0.90140 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.26 36.00 0.37 -0.67 16 2 C 0.12 2.00 7.21 -82.38 -0.59 1.41 16 3 N -0.30 -4.95 12.10 33.68 0.41 -4.55 16 4 N -0.34 -5.30 3.78 -8.38 -0.03 -5.33 16 5 C 0.38 5.21 7.36 -154.37 -1.14 4.08 16 6 C -0.17 -1.83 9.74 -39.26 -0.38 -2.22 16 7 C -0.05 -0.41 10.17 -39.31 -0.40 -0.81 16 8 C -0.19 -1.31 10.11 -39.42 -0.40 -1.71 16 9 C 0.13 1.10 11.18 -17.57 -0.20 0.90 16 10 N -0.50 -6.14 7.67 -12.29 -0.09 -6.23 16 11 C 0.11 1.67 6.89 -81.87 -0.56 1.11 16 12 C -0.10 -1.28 9.59 36.01 0.35 -0.94 16 13 C -0.21 -3.41 5.61 -105.03 -0.59 -4.00 16 14 C 0.14 2.29 5.58 -4.98 -0.03 2.26 16 15 N -0.66 -13.09 6.37 -115.07 -0.73 -13.82 16 16 C 0.11 2.38 5.51 -3.82 -0.02 2.36 16 17 C 0.06 1.35 1.55 -155.66 -0.24 1.11 16 18 C -0.47 -12.82 8.74 -34.44 -0.30 -13.12 16 19 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 20 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 21 N -0.89 -25.14 12.92 55.43 0.72 -24.42 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.22 -4.77 9.96 -26.69 -0.27 -5.03 16 27 C -0.16 -3.77 9.41 -26.70 -0.25 -4.02 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.15 7.24 -51.92 -0.38 0.78 16 31 H 0.14 1.58 7.91 -52.49 -0.41 1.16 16 32 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.25 5.87 -51.93 -0.30 0.95 16 37 H 0.08 1.01 7.78 -51.93 -0.40 0.61 16 38 H 0.08 1.32 7.24 -51.93 -0.38 0.94 16 39 H 0.02 0.37 7.77 -51.93 -0.40 -0.04 16 40 H 0.33 6.34 8.78 -39.29 -0.34 6.00 16 41 H 0.08 1.89 8.13 -51.93 -0.42 1.46 16 42 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -31.64 394.02 -10.81 -42.45 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.24 Total: 6.94 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -4.75 Total: -17.50 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.27 Total: -54.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.64 -10.81 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338442646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.249 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds