Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30818 * 125.81558 * 2 1 4 4 N 1.40091 * 108.25715 * 180.28120 * 3 2 1 5 5 C 1.39810 * 126.10664 * 179.74059 * 4 3 2 6 6 C 1.38944 * 119.68835 * 334.97885 * 5 4 3 7 7 C 1.38414 * 119.10746 * 180.02562 * 6 5 4 8 8 C 1.38795 * 118.48401 * 359.97438 * 7 6 5 9 9 C 1.38124 * 119.29388 * 0.02562 * 8 7 6 10 10 N 1.31894 * 120.84272 * 359.71987 * 9 8 7 11 11 C 1.35846 * 107.79037 * 359.71839 * 4 3 2 12 12 C 1.50700 * 126.19178 * 179.97438 * 11 4 3 13 13 C 1.35282 * 107.61611 * 0.02562 * 11 4 3 14 14 C 1.50701 * 126.01695 * 180.02562 * 13 11 4 15 15 N 1.46897 * 109.47192 * 89.99492 * 14 13 11 16 16 C 1.46899 * 111.00005 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47225 * 185.35234 * 16 15 14 18 18 C 1.50704 * 115.55231 * 65.04667 * 17 16 15 19 19 H 1.07999 * 120.00258 * 265.44776 * 18 17 16 20 20 C 1.37878 * 119.99829 * 85.44184 * 18 17 16 21 21 N 1.31516 * 119.99854 * 353.60603 * 20 18 17 22 22 Si 1.86800 * 119.99926 * 173.59862 * 20 18 17 23 23 H 1.48504 * 109.47077 * 60.00517 * 22 20 18 24 24 H 1.48500 * 109.47136 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47430 * 300.00761 * 22 20 18 26 26 C 1.52998 * 117.49915 * 279.38181 * 17 16 15 27 27 C 1.52996 * 117.50119 * 210.71993 * 17 16 15 28 28 H 1.09002 * 109.47187 * 270.18358 * 1 2 3 29 29 H 1.09000 * 109.47534 * 30.18496 * 1 2 3 30 30 H 1.09007 * 109.47392 * 150.18761 * 1 2 3 31 31 H 1.07998 * 120.44652 * 0.02562 * 6 5 4 32 32 H 1.08004 * 120.75719 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.35419 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.58038 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47324 * 270.02791 * 12 11 4 36 36 H 1.08997 * 109.47258 * 30.02672 * 12 11 4 37 37 H 1.09001 * 109.47137 * 150.02658 * 12 11 4 38 38 H 1.08994 * 109.47013 * 209.99370 * 14 13 11 39 39 H 1.08998 * 109.46585 * 329.99445 * 14 13 11 40 40 H 1.00903 * 111.00024 * 303.95713 * 15 14 13 41 41 H 1.08996 * 109.47239 * 305.34739 * 16 15 14 42 42 H 1.08991 * 109.47294 * 65.35326 * 16 15 14 43 43 H 0.97002 * 119.99427 * 179.97438 * 21 20 18 44 44 H 1.09003 * 117.49967 * 359.97438 * 26 17 16 45 45 H 1.08998 * 117.50422 * 145.02157 * 26 17 16 46 46 H 1.08995 * 117.50082 * 214.98037 * 27 17 16 47 47 H 1.09003 * 117.49651 * 359.97210 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0608 0.0000 4 7 3.6081 0.6382 -0.0065 5 6 4.7344 1.4666 -0.0137 6 6 4.6379 2.7547 -0.5256 7 6 5.7606 3.5643 -0.5274 8 6 6.9451 3.0546 -0.0141 9 6 6.9683 1.7645 0.4787 10 7 5.8808 1.0182 0.4715 11 6 3.6137 -0.7203 -0.0041 12 6 4.8335 -1.6052 -0.0097 13 6 2.3260 -1.1349 0.0031 14 6 1.8561 -2.5668 0.0086 15 7 1.7103 -3.0290 1.3953 16 6 1.2532 -4.4243 1.4399 17 6 0.9855 -4.8273 2.8914 18 6 -0.1423 -4.0949 3.5719 19 1 0.0651 -3.2194 4.1693 20 6 -1.4388 -4.5426 3.4316 21 7 -1.7078 -5.5300 2.6057 22 14 -2.8132 -3.7467 4.4150 23 1 -2.8933 -2.3033 4.0751 24 1 -4.1028 -4.4054 4.0861 25 1 -2.5360 -3.8987 5.8659 26 6 2.1896 -5.2227 3.7483 27 6 1.2057 -6.2932 3.2698 28 1 -0.3634 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 3.6997 3.1193 -0.9169 32 1 5.7156 4.5701 -0.9184 33 1 7.8392 3.6602 -0.0002 34 1 7.8876 1.3630 0.8787 35 1 5.1218 -1.8200 -1.0387 36 1 5.6530 -1.0975 0.4988 37 1 4.6078 -2.5382 0.5068 38 1 0.8947 -2.6356 -0.5003 39 1 2.5859 -3.1905 -0.5075 40 1 2.5723 -2.9146 1.9071 41 1 0.3358 -4.5248 0.8599 42 1 2.0220 -5.0721 1.0189 43 1 -2.6199 -5.8451 2.5073 44 1 3.1726 -5.1962 3.2779 45 1 2.1661 -4.9536 4.8043 46 1 0.5352 -6.7279 4.0110 47 1 1.5410 -6.9708 2.4844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338442646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = 129.600120 kcal Electronic energy + Delta-G solvation = -27163.931555 eV Core-core repulsion = 23541.728469 eV Total energy + Delta-G solvation = -3622.203086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.75862 -40.92496 -38.76858 -36.30681 -35.13272 -33.87876 -33.60729 -33.09290 -31.48887 -29.36116 -28.52414 -27.62623 -26.63265 -24.84445 -24.40576 -23.63186 -22.77431 -20.94816 -20.93600 -20.42748 -18.82428 -17.95673 -17.50020 -17.02688 -16.71975 -16.48757 -16.20025 -15.70622 -15.50866 -15.29105 -15.05539 -14.79335 -14.70901 -14.46329 -14.20527 -14.06227 -13.91630 -13.44731 -13.31854 -13.22584 -13.08417 -13.05592 -12.83219 -12.80290 -12.53266 -12.44861 -12.33098 -11.98225 -11.67194 -11.28883 -11.10616 -10.92331 -10.69761 -10.55152 -10.32937 -9.93480 -9.79244 -9.23021 -8.91820 -7.99398 -6.04749 -0.33422 0.18860 0.91902 1.18909 1.45606 1.45998 1.53164 1.58887 2.51092 2.72004 3.26753 3.30530 3.40992 3.48075 3.69993 3.81033 3.94363 3.99136 4.03434 4.13211 4.19488 4.34532 4.42661 4.44004 4.60404 4.62294 4.66516 4.70133 4.71551 4.78712 4.82220 4.86220 4.98575 4.99650 5.02900 5.05040 5.11752 5.15908 5.17846 5.23497 5.32590 5.52573 5.61138 5.68124 5.80407 5.93147 6.13070 6.41826 6.44427 6.56749 6.78310 6.89210 6.97607 7.59821 9.09382 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002924 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.315039 B = 9574.239222 C =10336.988734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.103 3.897 3 N -0.315 5.315 4 N -0.338 5.338 5 C 0.337 3.663 6 C -0.178 4.178 7 C -0.049 4.049 8 C -0.170 4.170 9 C 0.120 3.880 10 N -0.524 5.524 11 C 0.107 3.893 12 C -0.095 4.095 13 C -0.231 4.231 14 C 0.147 3.853 15 N -0.672 5.672 16 C 0.124 3.876 17 C 0.029 3.971 18 C -0.480 4.480 19 H 0.042 0.958 20 C 0.026 3.974 21 N -0.909 5.909 22 Si 0.939 3.061 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.278 1.278 26 C -0.191 4.191 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.197 0.803 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.332 0.668 41 H 0.046 0.954 42 H 0.009 0.991 43 H 0.256 0.744 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.610 16.076 -9.946 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 N -0.136 5.136 4 N -0.116 5.116 5 C 0.113 3.887 6 C -0.201 4.201 7 C -0.075 4.075 8 C -0.190 4.190 9 C -0.038 4.038 10 N -0.238 5.238 11 C -0.016 4.016 12 C -0.153 4.153 13 C -0.241 4.241 14 C 0.017 3.983 15 N -0.303 5.303 16 C -0.005 4.005 17 C 0.028 3.972 18 C -0.518 4.518 19 H 0.060 0.940 20 C -0.173 4.173 21 N -0.548 5.548 22 Si 0.766 3.234 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.204 1.204 26 C -0.229 4.229 27 C -0.202 4.202 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.213 0.787 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.149 0.851 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.939 16.691 -9.620 26.324 hybrid contribution -0.661 -0.469 0.134 0.821 sum 17.278 16.222 -9.486 25.528 Atomic orbital electron populations 1.20235 0.84926 1.03993 1.03481 1.22753 0.98032 0.90051 0.95630 1.77296 0.85126 1.22742 1.28417 1.45659 1.03857 1.03947 1.58122 1.18043 0.84742 0.89043 0.96903 1.21809 1.02108 0.93232 1.02954 1.21960 0.90710 1.00640 0.94187 1.22625 1.00344 0.96873 0.99177 1.23286 0.95026 0.91226 0.94244 1.66954 0.99242 1.39875 1.17703 1.21597 0.97719 0.83909 0.98403 1.20713 0.93097 0.97453 1.04008 1.19870 0.91239 0.96594 1.16420 1.20032 0.99621 0.88623 0.89982 1.60189 1.36067 1.21632 1.12407 1.21192 0.96545 0.86484 0.96254 1.18906 0.93447 0.93203 0.91603 1.20476 0.91110 1.11120 1.29142 0.93981 1.25496 1.00151 0.95677 0.95960 1.70092 1.19683 1.28484 1.36577 0.85917 0.79185 0.78876 0.79403 1.20048 1.21141 1.20381 1.22966 0.94286 1.05946 0.99675 1.22432 1.02051 0.93360 1.02389 0.90707 0.89497 0.89614 0.84672 0.80678 0.80049 0.78657 0.89513 0.87918 0.89809 0.91095 0.94244 0.85083 0.93539 0.97281 0.93503 0.89294 0.91052 0.92562 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.01 10.26 71.24 0.73 -1.28 16 2 C 0.10 3.51 7.21 43.13 0.31 3.82 16 3 N -0.32 -10.86 12.10 -47.34 -0.57 -11.43 16 4 N -0.34 -10.82 3.78 -180.43 -0.68 -11.50 16 5 C 0.34 9.04 7.36 132.76 0.98 10.02 16 6 C -0.18 -3.78 9.74 22.48 0.22 -3.56 16 7 C -0.05 -0.60 10.17 22.45 0.23 -0.37 16 8 C -0.17 -1.58 10.11 22.38 0.23 -1.36 16 9 C 0.12 1.65 11.18 84.66 0.95 2.60 16 10 N -0.52 -12.04 7.67 -192.80 -1.48 -13.52 16 11 C 0.11 3.34 6.89 41.26 0.28 3.62 16 12 C -0.09 -2.31 9.59 71.24 0.68 -1.62 16 13 C -0.23 -7.71 5.61 -20.13 -0.11 -7.83 16 14 C 0.15 4.96 5.58 85.56 0.48 5.44 16 15 N -0.67 -26.70 6.37 -517.96 -3.30 -30.00 16 16 C 0.12 5.50 5.51 86.30 0.48 5.98 16 17 C 0.03 1.43 1.55 -52.93 -0.08 1.34 16 18 C -0.48 -26.79 8.74 25.60 0.22 -26.56 16 19 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 20 C 0.03 1.47 5.39 84.65 0.46 1.92 16 21 N -0.91 -52.46 12.92 21.45 0.28 -52.18 16 22 Si 0.94 44.91 29.54 68.60 2.03 46.94 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 C -0.19 -8.20 9.96 30.62 0.30 -7.90 16 27 C -0.16 -7.75 9.41 30.62 0.29 -7.46 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.09 2.45 7.24 -2.38 -0.02 2.44 16 31 H 0.14 3.00 7.91 -2.91 -0.02 2.97 16 32 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 34 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.45 5.87 -2.39 -0.01 2.44 16 37 H 0.08 1.98 7.78 -2.39 -0.02 1.96 16 38 H 0.07 2.46 7.24 -2.39 -0.02 2.45 16 39 H 0.04 1.20 7.77 -2.39 -0.02 1.18 16 40 H 0.33 12.68 8.78 -89.69 -0.79 11.89 16 41 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 42 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 43 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.07 3.21 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.42 394.02 3.10 -67.32 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.19 Total: 27.56 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 6.64 Total: -23.19 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.75 Total: -118.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.42 3.10 -67.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338442646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.921 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds