Wall clock time and date at job start Tue Mar 31 2020 14:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48502 * 109.47275 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47184 * 29.99980 * 3 2 1 6 6 H 1.48494 * 109.47371 * 149.99721 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46698 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46910 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46927 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99723 * 170.00299 * 12 11 10 14 14 C 1.50709 * 109.47272 * 290.23719 * 13 12 11 15 15 C 1.38275 * 119.93444 * 95.84761 * 14 13 12 16 16 C 1.38119 * 120.07044 * 180.29731 * 15 14 13 17 17 C 1.38838 * 119.92469 * 359.47644 * 16 15 14 18 18 N 1.40206 * 120.06299 * 180.27224 * 17 16 15 19 19 C 1.34727 * 126.83988 * 359.96086 * 18 17 16 20 20 N 1.30854 * 108.02661 * 179.83490 * 19 18 17 21 21 C 1.33255 * 109.84671 * 0.44536 * 20 19 18 22 22 N 1.30746 * 108.99733 * 359.72182 * 21 20 19 23 23 C 1.38837 * 119.87195 * 0.52462 * 17 16 15 24 24 C 1.38113 * 119.92877 * 359.72595 * 23 17 16 25 25 C 1.46893 * 111.00260 * 293.95365 * 12 11 10 26 26 C 1.53001 * 117.50395 * 239.52192 * 25 12 11 27 27 C 1.53002 * 60.00042 * 252.50843 * 26 25 12 28 28 H 0.97006 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47185 * 60.00026 * 9 7 2 30 30 H 1.08994 * 109.47195 * 299.99132 * 9 7 2 31 31 H 1.09007 * 109.46956 * 59.99957 * 10 9 7 32 32 H 1.08991 * 109.47459 * 300.00040 * 10 9 7 33 33 H 1.08998 * 109.47272 * 60.00517 * 11 10 9 34 34 H 1.08999 * 109.47811 * 299.99978 * 11 10 9 35 35 H 1.09005 * 109.47028 * 170.23932 * 13 12 11 36 36 H 1.08995 * 109.47411 * 50.23863 * 13 12 11 37 37 H 1.08003 * 119.96177 * 0.02655 * 15 14 13 38 38 H 1.07997 * 120.03717 * 179.70397 * 16 15 14 39 39 H 1.07998 * 125.98577 * 359.96517 * 19 18 17 40 40 H 1.07994 * 125.50067 * 179.72565 * 21 20 19 41 41 H 1.08002 * 120.03293 * 179.74427 * 23 17 16 42 42 H 1.08005 * 119.96452 * 179.97438 * 24 23 17 43 43 H 1.09010 * 115.54711 * 25.23001 * 25 12 11 44 44 H 1.09004 * 117.49371 * 0.02562 * 26 25 12 45 45 H 1.09001 * 117.49662 * 145.01883 * 26 25 12 46 46 H 1.09000 * 117.49921 * 252.50691 * 27 26 25 47 47 H 1.09000 * 117.51450 * 107.47354 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4347 -6.1036 0.0018 13 6 1.7502 -7.3813 0.2405 14 6 1.2619 -7.4311 1.6654 15 6 -0.0409 -7.0746 1.9612 16 6 -0.4896 -7.1133 3.2670 17 6 0.3660 -7.5212 4.2815 18 7 -0.0881 -7.5670 5.6072 19 6 -1.3194 -7.2472 6.0508 20 7 -1.3421 -7.4266 7.3468 21 6 -0.1496 -7.8483 7.7661 22 7 0.6517 -7.9496 6.7380 23 6 1.6736 -7.8785 3.9814 24 6 2.1178 -7.8327 2.6745 25 6 3.2001 -6.1427 -1.2514 26 6 3.0973 -7.4096 -2.1029 27 6 4.3821 -7.1112 -1.3275 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6043 0.8906 32 1 2.8718 -3.6044 -0.8894 33 1 0.8532 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8913 35 1 2.4440 -8.2035 0.0653 36 1 0.9017 -7.4711 -0.4377 37 1 -0.7071 -6.7613 1.1710 38 1 -1.5058 -6.8302 3.4980 39 1 -2.1438 -6.9049 5.4430 40 1 0.1126 -8.0705 8.7899 41 1 2.3426 -8.1922 4.7691 42 1 3.1351 -8.1102 2.4404 43 1 3.2949 -5.1908 -1.7741 44 1 2.4613 -8.2141 -1.7334 45 1 3.1243 -7.2915 -3.1862 46 1 5.2543 -6.7968 -1.9006 47 1 4.5919 -7.7192 -0.4475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338598226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:25 Heat of formation + Delta-G solvation = 149.284353 kcal Electronic energy + Delta-G solvation = -26601.444720 eV Core-core repulsion = 22980.095207 eV Total energy + Delta-G solvation = -3621.349514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52988 -39.95356 -38.56056 -35.09621 -34.46446 -33.04994 -31.89773 -31.48363 -31.01789 -29.70680 -26.95314 -25.35238 -23.76468 -23.39942 -22.85711 -22.31452 -21.39869 -21.32144 -20.44852 -19.30901 -18.61924 -16.89842 -16.19329 -16.05283 -15.98295 -15.67026 -15.39896 -15.24711 -14.49775 -14.41281 -14.23323 -13.86227 -13.74639 -13.54140 -13.23109 -12.92774 -12.57113 -12.43648 -12.23208 -11.81503 -11.62926 -11.50701 -11.32614 -11.18143 -10.93611 -10.89187 -10.63357 -10.54806 -10.48887 -10.35829 -10.26864 -10.13647 -9.62683 -9.35537 -9.21235 -9.06420 -8.48581 -8.34517 -7.99384 -6.00125 -4.01876 0.48033 1.12887 1.76618 1.95142 2.64645 3.31856 3.38235 3.41580 3.43226 3.82247 3.98642 4.10943 4.17516 4.46415 4.53300 4.60043 4.70445 4.74882 4.85032 4.98851 5.05077 5.12707 5.14529 5.29410 5.36016 5.37478 5.50626 5.60289 5.71508 5.72999 5.81250 5.86462 5.89073 5.91277 6.02484 6.09634 6.13318 6.16383 6.28176 6.40000 6.45633 6.69065 6.74034 6.80089 7.09058 7.22929 7.32911 7.67816 7.73077 7.82224 8.00195 8.43769 9.05150 9.62214 11.11300 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008091 B = 0.003250 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.642826 B = 8614.465842 C =11326.256269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.054 3.946 12 N -0.501 5.501 13 C 0.087 3.913 14 C -0.071 4.071 15 C -0.085 4.085 16 C -0.129 4.129 17 C 0.140 3.860 18 N -0.324 5.324 19 C 0.261 3.739 20 N -0.541 5.541 21 C 0.202 3.798 22 N -0.315 5.315 23 C -0.110 4.110 24 C -0.075 4.075 25 C 0.029 3.971 26 C -0.224 4.224 27 C -0.174 4.174 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.223 0.777 40 H 0.222 0.778 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -20.999 4.623 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.141 4.141 11 C -0.072 4.072 12 N -0.223 5.223 13 C -0.041 4.041 14 C -0.072 4.072 15 C -0.104 4.104 16 C -0.149 4.149 17 C 0.047 3.953 18 N -0.108 5.108 19 C -0.034 4.034 20 N -0.267 5.267 21 C -0.100 4.100 22 N -0.141 5.141 23 C -0.130 4.130 24 C -0.094 4.094 25 C -0.080 4.080 26 C -0.263 4.263 27 C -0.212 4.212 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.239 0.761 40 H 0.238 0.762 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.033 -20.978 5.309 21.665 hybrid contribution -0.261 1.002 -0.751 1.279 sum 0.772 -19.977 4.558 20.505 Atomic orbital electron populations 1.69962 1.06040 1.26533 1.51064 1.25015 0.94841 0.99220 0.95381 0.86616 0.79929 0.83540 0.78068 1.20706 1.21231 1.19849 1.21245 0.93043 0.91033 1.50295 0.92711 1.19057 0.93990 0.91397 0.96985 1.21652 0.99101 0.92577 1.00799 1.22390 0.93705 0.90711 1.00442 1.61942 1.26406 1.02524 1.31408 1.21177 0.97687 0.93499 0.91688 1.19901 0.93386 0.98057 0.95846 1.20945 0.95786 0.98043 0.95601 1.20750 0.99620 1.02633 0.91930 1.17562 0.95018 1.03533 0.79156 1.47750 1.09500 1.47514 1.06005 1.26218 0.89304 0.96072 0.91822 1.70628 1.24157 1.22682 1.09195 1.26149 0.87008 0.97091 0.99762 1.78117 1.19642 1.24142 0.92213 1.20887 0.93618 1.00895 0.97620 1.20909 0.99629 0.97801 0.91044 1.22739 0.99229 0.94808 0.91266 1.23575 1.02096 1.01616 0.98966 1.23028 0.92305 1.03701 1.02121 0.93061 0.96871 0.96702 0.92646 0.93459 0.94971 0.90785 0.89700 0.93429 0.84717 0.85014 0.76096 0.76195 0.84589 0.84897 0.85738 0.88556 0.89001 0.88684 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.10 5.14 -26.73 -0.14 -2.24 16 11 C 0.05 0.88 4.77 -3.82 -0.02 0.86 16 12 N -0.50 -6.82 4.67 -228.08 -1.06 -7.89 16 13 C 0.09 0.94 3.76 -4.97 -0.02 0.92 16 14 C -0.07 -0.78 4.86 -104.59 -0.51 -1.29 16 15 C -0.08 -0.89 8.21 -39.61 -0.33 -1.22 16 16 C -0.13 -1.30 9.47 -39.40 -0.37 -1.68 16 17 C 0.14 1.62 6.70 -83.58 -0.56 1.06 16 18 N -0.32 -3.87 3.82 -11.80 -0.05 -3.91 16 19 C 0.26 2.70 11.98 -90.37 -1.08 1.62 16 20 N -0.54 -6.29 11.19 -15.75 -0.18 -6.46 16 21 C 0.20 2.16 13.03 -91.77 -1.20 0.97 16 22 N -0.32 -3.95 12.06 29.30 0.35 -3.60 16 23 C -0.11 -1.27 9.68 -39.41 -0.38 -1.65 16 24 C -0.07 -0.81 9.71 -39.61 -0.38 -1.19 16 25 C 0.03 0.37 5.78 -67.72 -0.39 -0.03 16 26 C -0.22 -2.27 9.51 -26.73 -0.25 -2.53 16 27 C -0.17 -1.82 10.01 -26.73 -0.27 -2.09 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.07 1.22 6.05 -51.93 -0.31 0.90 16 35 H 0.08 0.81 5.97 -51.93 -0.31 0.50 16 36 H 0.05 0.50 7.84 -51.93 -0.41 0.09 16 37 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.13 0.98 6.81 -52.49 -0.36 0.63 16 39 H 0.22 1.37 7.10 -52.49 -0.37 1.00 16 40 H 0.22 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 1.54 7.74 -52.49 -0.41 1.13 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.75 6.38 -51.92 -0.33 1.42 16 44 H 0.10 0.90 5.87 -51.93 -0.30 0.59 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 0.94 7.86 -51.93 -0.41 0.54 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -33.27 385.17 -12.75 -46.02 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.89 Total: 0.91 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -6.45 Total: -21.48 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.20 Total: -47.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.27 -12.75 -46.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338598226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.306 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds