Wall clock time and date at job start Tue Mar 31 2020 14:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48502 * 109.47275 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47184 * 29.99980 * 3 2 1 6 6 H 1.48494 * 109.47371 * 149.99721 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46698 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46910 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46927 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99723 * 170.00299 * 12 11 10 14 14 C 1.50709 * 109.47272 * 290.23719 * 13 12 11 15 15 C 1.38275 * 119.93444 * 95.84761 * 14 13 12 16 16 C 1.38119 * 120.07044 * 180.29731 * 15 14 13 17 17 C 1.38838 * 119.92469 * 359.47644 * 16 15 14 18 18 N 1.40206 * 120.06299 * 180.27224 * 17 16 15 19 19 C 1.34727 * 126.83988 * 359.96086 * 18 17 16 20 20 N 1.30854 * 108.02661 * 179.83490 * 19 18 17 21 21 C 1.33255 * 109.84671 * 0.44536 * 20 19 18 22 22 N 1.30746 * 108.99733 * 359.72182 * 21 20 19 23 23 C 1.38837 * 119.87195 * 0.52462 * 17 16 15 24 24 C 1.38113 * 119.92877 * 359.72595 * 23 17 16 25 25 C 1.46893 * 111.00260 * 293.95365 * 12 11 10 26 26 C 1.53001 * 117.50395 * 239.52192 * 25 12 11 27 27 C 1.53002 * 60.00042 * 252.50843 * 26 25 12 28 28 H 0.97006 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47185 * 60.00026 * 9 7 2 30 30 H 1.08994 * 109.47195 * 299.99132 * 9 7 2 31 31 H 1.09007 * 109.46956 * 59.99957 * 10 9 7 32 32 H 1.08991 * 109.47459 * 300.00040 * 10 9 7 33 33 H 1.08998 * 109.47272 * 60.00517 * 11 10 9 34 34 H 1.08999 * 109.47811 * 299.99978 * 11 10 9 35 35 H 1.09005 * 109.47028 * 170.23932 * 13 12 11 36 36 H 1.08995 * 109.47411 * 50.23863 * 13 12 11 37 37 H 1.08003 * 119.96177 * 0.02655 * 15 14 13 38 38 H 1.07997 * 120.03717 * 179.70397 * 16 15 14 39 39 H 1.07998 * 125.98577 * 359.96517 * 19 18 17 40 40 H 1.07994 * 125.50067 * 179.72565 * 21 20 19 41 41 H 1.08002 * 120.03293 * 179.74427 * 23 17 16 42 42 H 1.08005 * 119.96452 * 179.97438 * 24 23 17 43 43 H 1.09010 * 115.54711 * 25.23001 * 25 12 11 44 44 H 1.09004 * 117.49371 * 0.02562 * 26 25 12 45 45 H 1.09001 * 117.49662 * 145.01883 * 26 25 12 46 46 H 1.09000 * 117.49921 * 252.50691 * 27 26 25 47 47 H 1.09000 * 117.51450 * 107.47354 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4347 -6.1036 0.0018 13 6 1.7502 -7.3813 0.2405 14 6 1.2619 -7.4311 1.6654 15 6 -0.0409 -7.0746 1.9612 16 6 -0.4896 -7.1133 3.2670 17 6 0.3660 -7.5212 4.2815 18 7 -0.0881 -7.5670 5.6072 19 6 -1.3194 -7.2472 6.0508 20 7 -1.3421 -7.4266 7.3468 21 6 -0.1496 -7.8483 7.7661 22 7 0.6517 -7.9496 6.7380 23 6 1.6736 -7.8785 3.9814 24 6 2.1178 -7.8327 2.6745 25 6 3.2001 -6.1427 -1.2514 26 6 3.0973 -7.4096 -2.1029 27 6 4.3821 -7.1112 -1.3275 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6043 0.8906 32 1 2.8718 -3.6044 -0.8894 33 1 0.8532 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8913 35 1 2.4440 -8.2035 0.0653 36 1 0.9017 -7.4711 -0.4377 37 1 -0.7071 -6.7613 1.1710 38 1 -1.5058 -6.8302 3.4980 39 1 -2.1438 -6.9049 5.4430 40 1 0.1126 -8.0705 8.7899 41 1 2.3426 -8.1922 4.7691 42 1 3.1351 -8.1102 2.4404 43 1 3.2949 -5.1908 -1.7741 44 1 2.4613 -8.2141 -1.7334 45 1 3.1243 -7.2915 -3.1862 46 1 5.2543 -6.7968 -1.9006 47 1 4.5919 -7.7192 -0.4475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338598226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:24 Heat of formation + Delta-G solvation = 133.161288 kcal Electronic energy + Delta-G solvation = -26602.143869 eV Core-core repulsion = 22980.095207 eV Total energy + Delta-G solvation = -3622.048662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.34433 -40.83335 -39.48662 -36.33842 -35.71243 -34.59788 -33.02221 -32.68450 -31.84262 -30.86432 -28.43484 -26.59241 -24.84884 -24.34185 -24.12832 -23.12617 -22.47159 -22.19146 -21.80495 -20.44878 -19.42996 -18.52559 -17.62980 -16.92331 -16.80798 -16.77258 -16.45790 -16.26978 -16.07229 -15.54982 -15.16488 -14.84797 -14.74428 -14.46532 -14.28586 -14.17312 -14.00234 -13.57863 -13.35275 -13.25927 -13.04015 -12.68716 -12.66497 -12.44018 -12.21661 -12.09011 -11.98633 -11.79528 -11.74100 -11.38604 -11.25809 -11.24023 -11.19570 -11.01501 -10.99033 -10.54160 -10.02775 -9.34309 -9.00046 -8.20125 -6.30287 -0.33964 0.31633 0.94219 1.15940 1.39087 1.40159 1.51325 1.84459 2.40225 2.55159 2.93203 3.13114 3.17882 3.32613 3.39009 3.76167 3.78965 3.90868 3.94471 3.99574 4.08035 4.19976 4.23626 4.32573 4.36691 4.45552 4.54763 4.58464 4.73337 4.76516 4.82809 4.84657 4.95731 5.02839 5.04889 5.09088 5.14341 5.19363 5.27199 5.31506 5.34129 5.36130 5.52318 5.57635 5.66547 5.76938 5.87072 5.99616 6.13355 6.18706 6.29365 6.86188 6.91916 7.38643 8.91505 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008091 B = 0.003250 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.642826 B = 8614.465842 C =11326.256269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.088 4.088 11 C 0.069 3.931 12 N -0.506 5.506 13 C 0.090 3.910 14 C -0.080 4.080 15 C -0.092 4.092 16 C -0.128 4.128 17 C 0.126 3.874 18 N -0.335 5.335 19 C 0.262 3.738 20 N -0.563 5.563 21 C 0.203 3.797 22 N -0.349 5.349 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.002 4.002 26 C -0.205 4.205 27 C -0.163 4.163 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.257 0.743 40 H 0.253 0.747 41 H 0.131 0.869 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -21.673 4.226 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.126 4.126 11 C -0.058 4.058 12 N -0.228 5.228 13 C -0.036 4.036 14 C -0.081 4.081 15 C -0.111 4.111 16 C -0.149 4.149 17 C 0.034 3.966 18 N -0.119 5.119 19 C -0.032 4.032 20 N -0.290 5.290 21 C -0.099 4.099 22 N -0.175 5.175 23 C -0.143 4.143 24 C -0.096 4.096 25 C -0.111 4.111 26 C -0.244 4.244 27 C -0.201 4.201 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.273 0.727 40 H 0.268 0.732 41 H 0.149 0.851 42 H 0.163 0.837 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.483 -21.674 4.902 22.270 hybrid contribution -0.419 1.188 -0.616 1.403 sum 1.063 -20.485 4.286 20.956 Atomic orbital electron populations 1.70081 1.07625 1.27683 1.51731 1.25922 0.95770 1.03128 0.94793 0.85516 0.78689 0.78745 0.78543 1.19641 1.20667 1.19045 1.21681 0.93387 0.92559 1.50408 0.92647 1.18932 0.94305 0.92875 0.94708 1.21379 0.97891 0.93079 1.00218 1.22037 0.93511 0.89996 1.00264 1.61861 1.25843 1.02815 1.32291 1.21232 0.98256 0.92444 0.91713 1.20008 0.93717 0.98404 0.95977 1.21170 0.95956 0.97802 0.96137 1.21034 1.00661 1.01783 0.91391 1.17794 0.95397 1.03941 0.79473 1.47827 1.09999 1.48041 1.05997 1.26974 0.89566 0.94743 0.91944 1.70668 1.24694 1.23652 1.09962 1.26838 0.86500 0.95778 1.00776 1.78070 1.20920 1.25588 0.92879 1.20956 0.93889 1.01557 0.97896 1.21045 1.00210 0.97591 0.90728 1.22704 1.01403 0.95197 0.91753 1.23622 1.01670 0.99941 0.99142 1.23096 0.92270 1.02250 1.02439 0.92786 0.98917 0.99085 0.93814 0.93285 0.95118 0.91015 0.87879 0.92593 0.83675 0.82455 0.72714 0.73152 0.85112 0.83722 0.87795 0.87222 0.88280 0.87952 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.55 4.97 29.85 0.15 1.69 16 10 C -0.09 -3.63 5.14 30.59 0.16 -3.47 16 11 C 0.07 2.26 4.77 86.30 0.41 2.67 16 12 N -0.51 -13.24 4.67 -875.50 -4.09 -17.32 16 13 C 0.09 1.79 3.76 85.56 0.32 2.11 16 14 C -0.08 -1.66 4.86 -19.84 -0.10 -1.76 16 15 C -0.09 -1.82 8.21 22.25 0.18 -1.64 16 16 C -0.13 -2.44 9.47 22.39 0.21 -2.23 16 17 C 0.13 2.87 6.70 38.09 0.26 3.12 16 18 N -0.34 -7.84 3.82 -191.25 -0.73 -8.57 16 19 C 0.26 5.12 11.98 180.26 2.16 7.28 16 20 N -0.56 -12.59 11.19 -203.74 -2.28 -14.87 16 21 C 0.20 4.21 13.03 180.75 2.35 6.56 16 22 N -0.35 -8.70 12.06 -61.22 -0.74 -9.44 16 23 C -0.12 -2.82 9.68 22.38 0.22 -2.60 16 24 C -0.08 -1.60 9.71 22.25 0.22 -1.38 16 25 C 0.00 -0.04 5.78 44.92 0.26 0.22 16 26 C -0.21 -3.65 9.51 30.60 0.29 -3.36 16 27 C -0.16 -3.05 10.01 30.60 0.31 -2.75 16 28 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 1.99 6.45 -2.39 -0.02 1.97 16 33 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 34 H 0.07 2.36 6.05 -2.39 -0.01 2.34 16 35 H 0.10 1.68 5.97 -2.38 -0.01 1.66 16 36 H 0.06 1.04 7.84 -2.39 -0.02 1.02 16 37 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.16 2.02 6.81 -2.91 -0.02 2.00 16 39 H 0.26 2.63 7.10 -2.91 -0.02 2.61 16 40 H 0.25 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.13 3.04 7.74 -2.91 -0.02 3.02 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.10 2.92 6.38 -2.38 -0.02 2.91 16 44 H 0.11 1.67 5.87 -2.39 -0.01 1.66 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.10 1.76 7.86 -2.39 -0.02 1.74 16 Total: -1.00 -72.45 385.17 3.54 -68.92 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.97 Total: 16.84 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 8.09 Total: -25.96 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -7.55 Total: -106.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.45 3.54 -68.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338598226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.080 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds