Wall clock time and date at job start Tue Mar 31 2020 14:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48499 * 109.46949 * 239.99578 * 3 2 1 5 5 H 1.48500 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47318 * 119.99616 * 3 2 1 7 7 C 1.39947 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99631 * 197.85324 * 7 2 1 9 9 C 1.41392 * 120.00121 * 17.86288 * 7 2 1 10 10 C 1.40719 * 120.24526 * 24.38114 * 9 7 2 11 11 C 1.37613 * 119.74124 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25563 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.75475 * 180.02562 * 12 11 10 14 14 N 1.46903 * 109.46971 * 90.00252 * 13 12 11 15 15 C 1.46843 * 111.00227 * 170.00329 * 14 13 12 16 16 C 1.53034 * 109.52500 * 185.83933 * 15 14 13 17 17 C 1.53125 * 109.27829 * 300.81985 * 16 15 14 18 18 C 1.53000 * 109.52074 * 177.55814 * 17 16 15 19 19 N 1.46504 * 109.46738 * 174.99577 * 18 17 16 20 20 C 1.35311 * 125.86446 * 125.00025 * 19 18 17 21 21 C 1.35348 * 106.17621 * 179.97438 * 20 19 18 22 22 N 1.33773 * 106.49566 * 0.02562 * 21 20 19 23 23 N 1.28632 * 108.88269 * 359.97438 * 22 21 20 24 24 C 1.53117 * 109.15843 * 57.65165 * 17 16 15 25 25 C 1.46854 * 110.99752 * 294.21231 * 14 13 12 26 26 C 1.38637 * 120.49637 * 0.29717 * 12 11 10 27 27 C 1.37623 * 120.24721 * 359.44573 * 26 12 11 28 28 H 0.97010 * 119.99562 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.12730 * 0.02562 * 10 9 7 30 30 H 1.08013 * 119.87425 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.46823 * 330.00725 * 13 12 11 32 32 H 1.08995 * 109.47769 * 210.00280 * 13 12 11 33 33 H 1.09000 * 109.46367 * 65.82265 * 15 14 13 34 34 H 1.08997 * 109.45939 * 305.85818 * 15 14 13 35 35 H 1.09005 * 109.50351 * 180.87931 * 16 15 14 36 36 H 1.08998 * 109.50596 * 60.75954 * 16 15 14 37 37 H 1.08997 * 109.51934 * 297.68181 * 17 16 15 38 38 H 1.09004 * 109.47404 * 55.00352 * 18 17 16 39 39 H 1.08992 * 109.47234 * 295.00021 * 18 17 16 40 40 H 1.08001 * 126.91359 * 359.97438 * 20 19 18 41 41 H 1.08000 * 126.75384 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.50055 * 62.29176 * 24 17 16 43 43 H 1.09000 * 109.49708 * 182.40457 * 24 17 16 44 44 H 1.09001 * 109.46125 * 294.17358 * 25 14 13 45 45 H 1.08996 * 109.46292 * 54.14709 * 25 14 13 46 46 H 1.08000 * 119.87440 * 179.70332 * 26 12 11 47 47 H 1.07999 * 120.12254 * 180.27328 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3520 -2.4071 -0.3745 10 6 0.2207 -2.3626 -1.2103 11 6 -0.4099 -3.5321 -1.5684 12 6 0.0654 -4.7509 -1.1096 13 6 -0.6336 -6.0247 -1.5093 14 7 -0.0424 -6.5384 -2.7521 15 6 -0.5298 -7.8919 -3.0465 16 6 0.2134 -8.4500 -4.2623 17 6 -0.0209 -7.5303 -5.4640 18 6 0.7689 -8.0497 -6.6670 19 7 0.4513 -7.2402 -7.8461 20 6 1.3463 -6.5933 -8.6280 21 6 0.6265 -5.9764 -9.5941 22 7 -0.6568 -6.2718 -9.3586 23 7 -0.7268 -7.0222 -8.3162 24 6 0.4508 -6.1162 -5.1141 25 6 -0.2993 -5.6258 -3.8736 26 6 1.1757 -4.8063 -0.2812 27 6 1.8254 -3.6498 0.0855 28 1 -0.4850 0.8402 -0.0004 29 1 -0.1510 -1.4143 -1.5692 30 1 -1.2782 -3.5004 -2.2102 31 1 -1.6932 -5.8234 -1.6671 32 1 -0.5184 -6.7660 -0.7186 33 1 -1.5982 -7.8549 -3.2595 34 1 -0.3534 -8.5367 -2.1856 35 1 -0.1596 -9.4485 -4.4901 36 1 1.2804 -8.5002 -4.0452 37 1 -1.0834 -7.5114 -5.7065 38 1 0.5003 -9.0889 -6.8568 39 1 1.8364 -7.9829 -6.4572 40 1 2.4192 -6.5732 -8.5059 41 1 1.0121 -5.3652 -10.3966 42 1 1.5215 -6.1298 -4.9103 43 1 0.2473 -5.4475 -5.9504 44 1 -1.3688 -5.5994 -4.0826 45 1 0.0446 -4.6248 -3.6134 46 1 1.5346 -5.7609 0.0743 47 1 2.6928 -3.6957 0.7274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343424645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:34 Heat of formation + Delta-G solvation = 93.981037 kcal Electronic energy + Delta-G solvation = -27026.857176 eV Core-core repulsion = 23403.109530 eV Total energy + Delta-G solvation = -3623.747645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.14272 -40.45757 -39.19033 -36.78135 -35.54895 -34.00306 -32.04519 -31.90897 -31.70525 -31.11777 -29.29722 -27.54570 -25.35457 -24.24693 -23.75703 -23.40367 -22.74778 -22.02326 -21.49243 -20.58177 -19.21222 -18.38539 -17.45613 -17.20761 -16.81317 -16.32923 -16.06591 -15.77703 -15.69597 -15.44497 -15.24656 -15.03255 -14.92888 -14.37223 -14.10974 -13.97315 -13.82621 -13.51075 -13.34660 -13.22710 -12.86082 -12.74967 -12.64746 -12.48902 -12.36408 -12.21819 -12.06798 -11.95105 -11.75884 -11.56179 -11.46656 -11.28644 -11.22400 -10.98589 -10.85717 -10.28026 -9.38273 -9.24483 -9.10116 -8.63893 -6.32637 0.73800 0.95121 1.16871 1.36444 1.47668 1.52316 1.56277 1.67344 2.19681 2.67003 3.13443 3.41657 3.63781 3.71118 3.76279 3.84688 4.10215 4.13892 4.25184 4.28883 4.30126 4.38035 4.41332 4.42198 4.50031 4.55159 4.62442 4.65239 4.75294 4.77812 4.82553 4.93811 4.97869 5.01612 5.05860 5.11983 5.15174 5.17016 5.31406 5.38191 5.42960 5.48657 5.71659 5.75123 5.97163 6.10706 6.11505 6.27072 6.35812 6.40860 6.71386 6.95148 7.05467 7.58413 8.32839 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.002746 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.500090 B =10195.733668 C =11618.796613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.080 3.920 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.192 4.192 13 C 0.124 3.876 14 N -0.533 5.533 15 C 0.049 3.951 16 C -0.097 4.097 17 C -0.093 4.093 18 C 0.116 3.884 19 N -0.282 5.282 20 C -0.037 4.037 21 C -0.071 4.071 22 N -0.321 5.321 23 N -0.125 5.125 24 C -0.098 4.098 25 C 0.059 3.941 26 C -0.069 4.069 27 C -0.243 4.243 28 H 0.287 0.713 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.021 0.979 32 H 0.086 0.914 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.231 0.769 41 H 0.212 0.788 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.118 0.882 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -16.579 -12.401 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.078 3.922 10 C -0.210 4.210 11 C -0.116 4.116 12 C -0.193 4.193 13 C -0.003 4.003 14 N -0.257 5.257 15 C -0.078 4.078 16 C -0.135 4.135 17 C -0.113 4.113 18 C -0.003 4.003 19 N -0.076 5.076 20 C -0.188 4.188 21 C -0.229 4.229 22 N -0.186 5.186 23 N -0.105 5.105 24 C -0.136 4.136 25 C -0.069 4.069 26 C -0.088 4.088 27 C -0.262 4.262 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.248 0.752 41 H 0.229 0.771 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.136 0.864 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.007 -16.776 -12.123 20.916 hybrid contribution 0.172 1.689 0.004 1.698 sum 3.180 -15.087 -12.119 19.612 Atomic orbital electron populations 1.69891 1.09059 1.30454 1.36019 1.26761 0.95458 1.04544 0.91243 0.85278 0.78806 0.75690 0.80105 1.18526 1.19317 1.18191 1.19815 0.98359 0.92634 1.42441 0.90704 1.17937 0.91842 0.93176 0.89268 1.21203 1.00437 0.96786 1.02576 1.20676 0.98450 0.93027 0.99431 1.19240 1.00732 0.93298 1.06075 1.20660 0.93895 0.93896 0.91854 1.62012 1.59195 1.02446 1.02081 1.22212 0.96556 0.89479 0.99563 1.21539 1.02458 0.98207 0.91263 1.21442 0.99889 0.95318 0.94606 1.22576 1.03573 0.94838 0.79327 1.47784 1.04854 1.33297 1.21690 1.24397 1.00336 0.99875 0.94214 1.24205 0.89132 1.05827 1.03744 1.75056 1.21650 1.12205 1.09650 1.78210 1.06577 1.17205 1.08478 1.21497 1.00976 0.95947 0.95179 1.21957 0.96652 0.96969 0.91314 1.20630 0.94641 0.96726 0.96802 1.21178 1.04355 0.93225 1.07485 0.90297 0.88766 0.89198 0.96090 0.89585 0.95774 0.89165 0.88344 0.89456 0.91700 0.86060 0.84249 0.75221 0.77138 0.90334 0.94007 0.96858 0.92540 0.86398 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.59 10.95 21.83 0.24 -44.35 16 2 C 0.03 1.78 5.14 85.26 0.44 2.21 16 3 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.50 -27.71 9.05 23.46 0.21 -27.50 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.41 5.58 -21.29 -0.12 4.29 16 10 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 11 C -0.10 -4.56 7.83 22.22 0.17 -4.39 16 12 C -0.19 -7.98 4.91 -19.68 -0.10 -8.08 16 13 C 0.12 4.02 5.11 85.56 0.44 4.46 16 14 N -0.53 -14.97 4.65 -900.94 -4.19 -19.16 16 15 C 0.05 0.99 5.46 86.33 0.47 1.46 16 16 C -0.10 -1.31 5.38 30.65 0.16 -1.14 16 17 C -0.09 -1.55 2.30 -10.71 -0.02 -1.57 16 18 C 0.12 1.27 5.85 86.38 0.51 1.78 16 19 N -0.28 -5.07 2.96 -347.73 -1.03 -6.10 16 20 C -0.04 -0.52 11.57 83.49 0.97 0.44 16 21 C -0.07 -1.34 12.05 83.73 1.01 -0.33 16 22 N -0.32 -8.87 12.41 -58.26 -0.72 -9.60 16 23 N -0.13 -3.31 12.82 37.02 0.47 -2.84 16 24 C -0.10 -2.29 5.24 30.64 0.16 -2.13 16 25 C 0.06 1.80 5.15 86.32 0.44 2.24 16 26 C -0.07 -2.98 9.67 22.22 0.21 -2.77 16 27 C -0.24 -11.98 9.80 22.73 0.22 -11.76 16 28 H 0.29 14.02 8.30 -92.70 -0.77 13.25 16 29 H 0.09 5.40 6.16 -2.92 -0.02 5.38 16 30 H 0.09 3.97 7.94 -2.90 -0.02 3.95 16 31 H 0.02 0.69 8.06 -2.39 -0.02 0.68 16 32 H 0.09 2.47 7.92 -2.39 -0.02 2.45 16 33 H 0.02 0.51 8.14 -2.39 -0.02 0.50 16 34 H 0.09 1.57 8.01 -2.39 -0.02 1.56 16 35 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.38 8.00 -2.39 -0.02 1.37 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.14 0.69 8.07 -2.39 -0.02 0.67 16 40 H 0.23 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 1.10 7.84 -2.39 -0.02 1.08 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.06 2.11 5.74 -2.39 -0.01 2.09 16 46 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 47 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.01 378.52 3.13 -67.88 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.95 Total: 26.02 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 5.38 Total: -52.87 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -5.23 Total: -82.04 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -71.01 3.13 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343424645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.863 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds