Wall clock time and date at job start Tue Mar 31 2020 14:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46985 * 299.99952 * 3 2 1 6 6 H 1.48501 * 109.47155 * 59.99680 * 3 2 1 7 7 C 1.39946 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99871 * 197.85963 * 7 2 1 9 9 C 1.41399 * 119.99756 * 17.86752 * 7 2 1 10 10 C 1.40707 * 120.24534 * 24.36845 * 9 7 2 11 11 C 1.37617 * 119.74401 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.25021 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.74972 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47288 * 89.99645 * 13 12 11 15 15 C 1.46851 * 110.99950 * 293.95133 * 14 13 12 16 16 C 1.53034 * 109.52155 * 185.84021 * 15 14 13 17 17 C 1.53115 * 109.28133 * 300.81996 * 16 15 14 18 18 C 1.53127 * 109.15851 * 57.65720 * 17 16 15 19 19 H 1.08995 * 109.50511 * 62.32440 * 18 17 16 20 20 C 1.53001 * 109.50197 * 182.40781 * 18 17 16 21 21 N 1.46505 * 109.46995 * 294.99482 * 20 18 17 22 22 C 1.35315 * 125.86703 * 125.00058 * 21 20 18 23 23 C 1.35344 * 106.17720 * 180.02562 * 22 21 20 24 24 N 1.33774 * 106.49566 * 0.26318 * 23 22 21 25 25 N 1.28636 * 108.88317 * 359.56633 * 24 23 22 26 26 C 1.46839 * 111.00256 * 58.16383 * 14 13 12 27 27 C 1.38629 * 120.49657 * 0.29097 * 12 11 10 28 28 C 1.37616 * 120.25192 * 359.44947 * 27 12 11 29 29 H 0.96992 * 120.00273 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.12996 * 0.05092 * 10 9 7 31 31 H 1.08008 * 119.87914 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.46858 * 329.99156 * 13 12 11 33 33 H 1.08995 * 109.46655 * 209.99858 * 13 12 11 34 34 H 1.08998 * 109.45924 * 65.82629 * 15 14 13 35 35 H 1.08998 * 109.44949 * 305.84807 * 15 14 13 36 36 H 1.08998 * 109.50376 * 180.87961 * 16 15 14 37 37 H 1.09001 * 109.50235 * 60.76585 * 16 15 14 38 38 H 1.08996 * 109.52317 * 297.75164 * 17 16 15 39 39 H 1.08996 * 109.57733 * 177.58957 * 17 16 15 40 40 H 1.09004 * 109.46983 * 174.99937 * 20 18 17 41 41 H 1.08995 * 109.47109 * 54.99755 * 20 18 17 42 42 H 1.08000 * 126.90977 * 0.05823 * 22 21 20 43 43 H 1.07993 * 126.75645 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46554 * 54.14049 * 26 14 13 45 45 H 1.09008 * 109.46466 * 294.17766 * 26 14 13 46 46 H 1.07998 * 119.87502 * 179.70996 * 27 12 11 47 47 H 1.08000 * 120.13125 * 180.27222 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3521 -2.4071 -0.3746 10 6 0.2209 -2.3626 -1.2102 11 6 -0.4098 -3.5321 -1.5685 12 6 0.0658 -4.7509 -1.1098 13 6 -0.6332 -6.0247 -1.5097 14 7 -0.0422 -6.5381 -2.7527 15 6 -0.3048 -5.6285 -3.8752 16 6 0.1962 -6.2622 -5.1750 17 6 1.6978 -6.5375 -5.0573 18 6 1.9488 -7.4480 -3.8520 19 1 1.4479 -8.4035 -4.0071 20 6 3.4526 -7.6796 -3.6912 21 7 3.9590 -8.4213 -4.8488 22 6 4.9764 -8.0366 -5.6537 23 6 5.1073 -9.0083 -6.5866 24 7 4.1719 -9.9250 -6.3140 25 7 3.5120 -9.5504 -5.2753 26 6 1.3970 -6.7798 -2.5906 27 6 1.1762 -4.8063 -0.2818 28 6 1.8259 -3.6499 0.0850 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1508 -1.4143 -1.5693 31 1 -1.2786 -3.5004 -2.2094 32 1 -1.6929 -5.8236 -1.6671 33 1 -0.5176 -6.7660 -0.7191 34 1 0.2148 -4.6851 -3.7073 35 1 -1.3765 -5.4446 -3.9503 36 1 0.0153 -5.5802 -6.0057 37 1 -0.3329 -7.1989 -5.3506 38 1 2.2309 -5.5967 -4.9205 39 1 2.0513 -7.0280 -5.9642 40 1 3.6368 -8.2536 -2.7831 41 1 3.9630 -6.7189 -3.6237 42 1 5.5659 -7.1356 -5.5684 43 1 5.8226 -9.0358 -7.3952 44 1 1.5615 -7.4319 -1.7327 45 1 1.9087 -5.8310 -2.4287 46 1 1.5354 -5.7608 0.0734 47 1 2.6934 -3.6956 0.7267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343434979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:44 Heat of formation + Delta-G solvation = 109.290530 kcal Electronic energy + Delta-G solvation = -27543.583734 eV Core-core repulsion = 23920.499958 eV Total energy + Delta-G solvation = -3623.083776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.33729 -39.45998 -37.50408 -35.52561 -34.00870 -32.84448 -31.39889 -31.10069 -29.97757 -29.35205 -27.03105 -26.70761 -24.54323 -22.99452 -22.63639 -22.48163 -21.26125 -20.75751 -20.07069 -19.32931 -17.60652 -17.40189 -16.57977 -15.67501 -15.41518 -15.04869 -15.01368 -14.65258 -14.52825 -14.13589 -14.11945 -13.88383 -13.49247 -13.40787 -12.82075 -12.50451 -12.44274 -12.27381 -12.01333 -11.78746 -11.66709 -11.37327 -11.21551 -11.14293 -11.04825 -10.90436 -10.80687 -10.64258 -10.56439 -10.46809 -10.25411 -10.02746 -9.82632 -9.51227 -9.49644 -9.23045 -7.93780 -7.57293 -7.41661 -6.87209 -4.46719 1.51528 2.23902 2.48687 2.63024 2.93673 2.99619 3.03861 3.07886 3.83485 4.08978 4.27183 4.45239 4.52617 4.64640 4.72267 4.89462 5.03276 5.09570 5.12233 5.20668 5.31937 5.55261 5.56204 5.60743 5.65189 5.70492 5.82843 5.90384 5.96009 6.00734 6.04632 6.07302 6.18089 6.23244 6.25613 6.26283 6.38394 6.46595 6.49436 6.82588 6.95874 7.14027 7.22602 7.40015 7.42030 7.50057 7.74267 7.93880 8.00670 8.18343 8.42601 8.52792 8.78091 8.85659 10.06778 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002884 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.898346 B = 9707.456931 C =10538.850663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.088 4.088 12 C -0.251 4.251 13 C 0.115 3.885 14 N -0.529 5.529 15 C 0.053 3.947 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.096 4.096 19 H 0.094 0.906 20 C 0.116 3.884 21 N -0.280 5.280 22 C -0.051 4.051 23 C -0.058 4.058 24 N -0.279 5.279 25 N -0.081 5.081 26 C 0.065 3.935 27 C -0.079 4.079 28 C -0.229 4.229 29 H 0.281 0.719 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.188 0.812 43 H 0.187 0.813 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -8.852 -8.417 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.107 4.107 12 C -0.254 4.254 13 C -0.012 4.012 14 N -0.252 5.252 15 C -0.076 4.076 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.115 4.115 19 H 0.112 0.888 20 C -0.005 4.005 21 N -0.074 5.074 22 C -0.202 4.202 23 C -0.215 4.215 24 N -0.145 5.145 25 N -0.061 5.061 26 C -0.064 4.064 27 C -0.097 4.097 28 C -0.249 4.249 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.205 0.795 43 H 0.204 0.796 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.904 -10.271 -8.269 13.752 hybrid contribution 1.572 2.733 0.236 3.162 sum 5.476 -7.538 -8.033 12.302 Atomic orbital electron populations 1.69826 1.07613 1.29236 1.34839 1.25921 0.94717 1.01380 0.92199 0.86292 0.81018 0.80979 0.78661 1.18379 1.19650 1.19915 1.19639 0.98152 0.91330 1.40022 0.90468 1.17625 0.91014 0.92000 0.88326 1.21308 0.99467 0.96743 1.01140 1.20534 0.98136 0.92743 0.99281 1.19638 1.02141 0.94348 1.09268 1.20825 0.97227 0.93218 0.89940 1.62394 1.12025 1.45711 1.05064 1.22068 1.00599 0.94838 0.90048 1.21536 0.95052 1.01168 0.97307 1.21595 0.97535 0.99028 0.96939 1.21517 0.91641 1.01413 0.96962 0.88779 1.22299 0.96936 0.96423 0.84831 1.47535 1.22382 1.15313 1.22156 1.23723 0.96634 1.04150 0.95722 1.23588 1.02199 0.93073 1.02643 1.75123 1.06396 1.24801 1.08143 1.78301 1.20740 0.98262 1.08814 1.21921 0.89559 0.99785 0.95163 1.20355 0.95681 0.96168 0.97538 1.20953 1.03875 0.92985 1.07049 0.90837 0.86618 0.89801 0.91554 0.91609 0.93344 0.91321 0.91829 0.91490 0.91912 0.92748 0.87994 0.87395 0.79451 0.79629 0.91035 0.92837 0.89771 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.95 55.55 0.61 -19.15 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.11 2.85 5.58 -106.82 -0.60 2.25 16 10 C -0.17 -4.10 8.70 -38.88 -0.34 -4.44 16 11 C -0.09 -1.89 8.07 -39.66 -0.32 -2.21 16 12 C -0.25 -4.88 4.06 -104.33 -0.42 -5.31 16 13 C 0.11 1.85 5.55 -4.98 -0.03 1.82 16 14 N -0.53 -7.72 4.86 -236.12 -1.15 -8.87 16 15 C 0.05 0.75 4.81 -3.83 -0.02 0.73 16 16 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 17 C -0.11 -1.33 5.14 -26.61 -0.14 -1.46 16 18 C -0.10 -1.08 2.40 -90.53 -0.22 -1.30 16 19 H 0.09 1.21 8.00 -51.93 -0.42 0.79 16 20 C 0.12 1.09 5.85 -4.04 -0.02 1.07 16 21 N -0.28 -3.05 2.94 -61.26 -0.18 -3.23 16 22 C -0.05 -0.46 11.57 -17.05 -0.20 -0.66 16 23 C -0.06 -0.58 12.05 -17.74 -0.21 -0.79 16 24 N -0.28 -3.83 12.41 30.23 0.38 -3.46 16 25 N -0.08 -1.11 12.83 60.35 0.77 -0.34 16 26 C 0.06 0.85 3.82 -3.84 -0.01 0.84 16 27 C -0.08 -1.58 7.99 -39.66 -0.32 -1.90 16 28 C -0.23 -5.23 9.80 -38.87 -0.38 -5.61 16 29 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 30 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 31 H 0.08 1.67 8.03 -52.48 -0.42 1.25 16 32 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 33 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 35 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.66 7.83 -51.93 -0.41 0.25 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 45 H 0.05 0.81 6.48 -51.92 -0.34 0.48 16 46 H 0.08 1.49 8.03 -52.49 -0.42 1.07 16 47 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -28.29 374.91 -10.03 -38.33 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.27 Total: 6.99 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.82 Total: -28.85 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.43 Total: -35.04 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.29 -10.03 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343434979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.617 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds