Wall clock time and date at job start Tue Mar 31 2020 14:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46985 * 299.99952 * 3 2 1 6 6 H 1.48501 * 109.47155 * 59.99680 * 3 2 1 7 7 C 1.39946 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99871 * 197.85963 * 7 2 1 9 9 C 1.41399 * 119.99756 * 17.86752 * 7 2 1 10 10 C 1.40707 * 120.24534 * 24.36845 * 9 7 2 11 11 C 1.37617 * 119.74401 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.25021 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.74972 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47288 * 89.99645 * 13 12 11 15 15 C 1.46851 * 110.99950 * 293.95133 * 14 13 12 16 16 C 1.53034 * 109.52155 * 185.84021 * 15 14 13 17 17 C 1.53115 * 109.28133 * 300.81996 * 16 15 14 18 18 C 1.53127 * 109.15851 * 57.65720 * 17 16 15 19 19 H 1.08995 * 109.50511 * 62.32440 * 18 17 16 20 20 C 1.53001 * 109.50197 * 182.40781 * 18 17 16 21 21 N 1.46505 * 109.46995 * 294.99482 * 20 18 17 22 22 C 1.35315 * 125.86703 * 125.00058 * 21 20 18 23 23 C 1.35344 * 106.17720 * 180.02562 * 22 21 20 24 24 N 1.33774 * 106.49566 * 0.26318 * 23 22 21 25 25 N 1.28636 * 108.88317 * 359.56633 * 24 23 22 26 26 C 1.46839 * 111.00256 * 58.16383 * 14 13 12 27 27 C 1.38629 * 120.49657 * 0.29097 * 12 11 10 28 28 C 1.37616 * 120.25192 * 359.44947 * 27 12 11 29 29 H 0.96992 * 120.00273 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.12996 * 0.05092 * 10 9 7 31 31 H 1.08008 * 119.87914 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.46858 * 329.99156 * 13 12 11 33 33 H 1.08995 * 109.46655 * 209.99858 * 13 12 11 34 34 H 1.08998 * 109.45924 * 65.82629 * 15 14 13 35 35 H 1.08998 * 109.44949 * 305.84807 * 15 14 13 36 36 H 1.08998 * 109.50376 * 180.87961 * 16 15 14 37 37 H 1.09001 * 109.50235 * 60.76585 * 16 15 14 38 38 H 1.08996 * 109.52317 * 297.75164 * 17 16 15 39 39 H 1.08996 * 109.57733 * 177.58957 * 17 16 15 40 40 H 1.09004 * 109.46983 * 174.99937 * 20 18 17 41 41 H 1.08995 * 109.47109 * 54.99755 * 20 18 17 42 42 H 1.08000 * 126.90977 * 0.05823 * 22 21 20 43 43 H 1.07993 * 126.75645 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46554 * 54.14049 * 26 14 13 45 45 H 1.09008 * 109.46466 * 294.17766 * 26 14 13 46 46 H 1.07998 * 119.87502 * 179.70996 * 27 12 11 47 47 H 1.08000 * 120.13125 * 180.27222 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3521 -2.4071 -0.3746 10 6 0.2209 -2.3626 -1.2102 11 6 -0.4098 -3.5321 -1.5685 12 6 0.0658 -4.7509 -1.1098 13 6 -0.6332 -6.0247 -1.5097 14 7 -0.0422 -6.5381 -2.7527 15 6 -0.3048 -5.6285 -3.8752 16 6 0.1962 -6.2622 -5.1750 17 6 1.6978 -6.5375 -5.0573 18 6 1.9488 -7.4480 -3.8520 19 1 1.4479 -8.4035 -4.0071 20 6 3.4526 -7.6796 -3.6912 21 7 3.9590 -8.4213 -4.8488 22 6 4.9764 -8.0366 -5.6537 23 6 5.1073 -9.0083 -6.5866 24 7 4.1719 -9.9250 -6.3140 25 7 3.5120 -9.5504 -5.2753 26 6 1.3970 -6.7798 -2.5906 27 6 1.1762 -4.8063 -0.2818 28 6 1.8259 -3.6499 0.0850 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1508 -1.4143 -1.5693 31 1 -1.2786 -3.5004 -2.2094 32 1 -1.6929 -5.8236 -1.6671 33 1 -0.5176 -6.7660 -0.7191 34 1 0.2148 -4.6851 -3.7073 35 1 -1.3765 -5.4446 -3.9503 36 1 0.0153 -5.5802 -6.0057 37 1 -0.3329 -7.1989 -5.3506 38 1 2.2309 -5.5967 -4.9205 39 1 2.0513 -7.0280 -5.9642 40 1 3.6368 -8.2536 -2.7831 41 1 3.9630 -6.7189 -3.6237 42 1 5.5659 -7.1356 -5.5684 43 1 5.8226 -9.0358 -7.3952 44 1 1.5615 -7.4319 -1.7327 45 1 1.9087 -5.8310 -2.4287 46 1 1.5354 -5.7608 0.0734 47 1 2.6934 -3.6956 0.7267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343434979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:44 Heat of formation + Delta-G solvation = 94.099216 kcal Electronic energy + Delta-G solvation = -27544.242479 eV Core-core repulsion = 23920.499958 eV Total energy + Delta-G solvation = -3623.742521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.14086 -40.70094 -39.02892 -36.65261 -35.51187 -34.12454 -32.40063 -31.88550 -31.61260 -31.05389 -28.44670 -27.71284 -26.04789 -23.95658 -23.77723 -23.45408 -22.70646 -22.07098 -21.47168 -20.45887 -19.21830 -18.38536 -17.45266 -17.18241 -16.73158 -16.26275 -16.00538 -15.77353 -15.67599 -15.50209 -15.33288 -14.99422 -14.82698 -14.60565 -14.23325 -13.88405 -13.78798 -13.41778 -13.30541 -13.18756 -12.94974 -12.76276 -12.62560 -12.51696 -12.28496 -12.21906 -11.99751 -11.85315 -11.69608 -11.60269 -11.51796 -11.32971 -11.25298 -10.99396 -10.89892 -10.27186 -9.34678 -9.27223 -9.11196 -8.64577 -6.33965 0.74143 0.93987 1.15408 1.36328 1.47041 1.50518 1.51566 1.68838 2.18469 2.68609 3.09110 3.47494 3.68823 3.72963 3.76596 3.81750 4.05362 4.19810 4.23281 4.29738 4.35106 4.39202 4.40249 4.43853 4.53489 4.56642 4.61981 4.67349 4.77334 4.87306 4.89762 4.95847 4.99599 5.03011 5.07971 5.14994 5.16656 5.20861 5.33177 5.38190 5.42899 5.47117 5.70612 5.71896 5.96308 6.10325 6.13318 6.20218 6.34805 6.40025 6.71613 6.94424 7.04572 7.59787 8.31317 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002884 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.898346 B = 9707.456931 C =10538.850663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.192 4.192 11 C -0.090 4.090 12 C -0.230 4.230 13 C 0.118 3.882 14 N -0.526 5.526 15 C 0.055 3.945 16 C -0.109 4.109 17 C -0.108 4.108 18 C -0.084 4.084 19 H 0.081 0.919 20 C 0.116 3.884 21 N -0.280 5.280 22 C -0.040 4.040 23 C -0.066 4.066 24 N -0.316 5.316 25 N -0.120 5.120 26 C 0.067 3.933 27 C -0.073 4.073 28 C -0.241 4.241 29 H 0.287 0.713 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.227 0.773 43 H 0.215 0.785 44 H 0.083 0.917 45 H 0.036 0.964 46 H 0.117 0.883 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -9.570 -8.850 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.212 4.212 11 C -0.109 4.109 12 C -0.233 4.233 13 C -0.009 4.009 14 N -0.248 5.248 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.104 4.104 19 H 0.099 0.901 20 C -0.005 4.005 21 N -0.074 5.074 22 C -0.191 4.191 23 C -0.224 4.224 24 N -0.181 5.181 25 N -0.100 5.100 26 C -0.062 4.062 27 C -0.092 4.092 28 C -0.261 4.261 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.243 0.757 43 H 0.232 0.768 44 H 0.102 0.898 45 H 0.054 0.946 46 H 0.135 0.865 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.007 -11.022 -8.703 14.909 hybrid contribution 1.198 2.806 0.311 3.066 sum 6.204 -8.216 -8.391 13.282 Atomic orbital electron populations 1.69884 1.08989 1.30353 1.36012 1.26721 0.95433 1.04461 0.91332 0.85224 0.79555 0.76482 0.78872 1.18063 1.19011 1.19213 1.19855 0.98291 0.92668 1.42232 0.90864 1.17940 0.91837 0.93107 0.89246 1.21235 1.00458 0.96954 1.02519 1.20723 0.98273 0.92708 0.99192 1.20039 1.01202 0.95081 1.06958 1.20863 0.97223 0.91723 0.91115 1.62424 1.13078 1.45029 1.04262 1.22052 1.00478 0.93847 0.90923 1.21501 0.95512 1.01134 0.96492 1.21533 0.96941 0.98986 0.97075 1.21332 0.93057 1.00219 0.95744 0.90101 1.22387 0.95572 0.97515 0.84978 1.47651 1.22605 1.14766 1.22380 1.24377 0.95690 1.04774 0.94297 1.24190 1.01956 0.92575 1.03650 1.75067 1.07780 1.26486 1.08777 1.78258 1.22146 0.99832 1.09753 1.21941 0.88337 0.99252 0.96642 1.20657 0.95167 0.96632 0.96741 1.21151 1.04388 0.93226 1.07330 0.90291 0.88853 0.88558 0.91094 0.89977 0.95767 0.91216 0.90924 0.91528 0.91978 0.92935 0.86771 0.85312 0.75698 0.76814 0.89844 0.94571 0.86518 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.78 10.95 21.83 0.24 -42.54 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.48 29.60 68.60 2.03 39.51 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 7 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.08 4.20 5.58 -21.29 -0.12 4.08 16 10 C -0.19 -9.72 8.70 22.73 0.20 -9.53 16 11 C -0.09 -3.87 8.07 22.22 0.18 -3.69 16 12 C -0.23 -8.60 4.06 -19.67 -0.08 -8.68 16 13 C 0.12 3.51 5.55 85.56 0.47 3.99 16 14 N -0.53 -14.19 4.86 -900.95 -4.38 -18.57 16 15 C 0.06 1.51 4.81 86.32 0.42 1.92 16 16 C -0.11 -2.52 6.09 30.64 0.19 -2.33 16 17 C -0.11 -2.33 5.14 30.68 0.16 -2.17 16 18 C -0.08 -1.73 2.40 -10.74 -0.03 -1.75 16 19 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 20 C 0.12 1.87 5.85 86.38 0.51 2.38 16 21 N -0.28 -5.49 2.94 -347.73 -1.02 -6.52 16 22 C -0.04 -0.60 11.57 83.49 0.97 0.37 16 23 C -0.07 -1.19 12.05 83.73 1.01 -0.18 16 24 N -0.32 -8.41 12.41 -58.26 -0.72 -9.14 16 25 N -0.12 -3.20 12.83 37.02 0.47 -2.72 16 26 C 0.07 1.60 3.82 86.33 0.33 1.93 16 27 C -0.07 -2.82 7.99 22.22 0.18 -2.65 16 28 C -0.24 -11.02 9.80 22.73 0.22 -10.80 16 29 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 30 H 0.09 5.07 6.16 -2.91 -0.02 5.05 16 31 H 0.10 3.82 8.03 -2.91 -0.02 3.79 16 32 H 0.07 2.08 8.00 -2.39 -0.02 2.07 16 33 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.02 0.78 6.55 -2.39 -0.02 0.77 16 35 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.18 7.83 -2.39 -0.02 1.16 16 40 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.13 1.56 8.07 -2.39 -0.02 1.54 16 42 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 45 H 0.04 1.02 6.48 -2.38 -0.02 1.00 16 46 H 0.12 3.73 8.03 -2.91 -0.02 3.71 16 47 H 0.09 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -64.07 374.91 2.82 -61.25 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.95 Total: 29.81 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 5.25 Total: -51.08 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -5.41 Total: -79.48 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -64.07 2.82 -61.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343434979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.350 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds