Wall clock time and date at job start Tue Mar 31 2020 14:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50692 * 119.75360 * 179.69837 * 12 11 10 14 14 N 1.46905 * 109.46934 * 270.01935 * 13 12 11 15 15 C 1.46957 * 111.00204 * 293.80069 * 14 13 12 16 16 C 1.53050 * 109.36296 * 176.81120 * 15 14 13 17 17 N 1.46958 * 109.36712 * 58.40356 * 16 15 14 18 18 C 1.46892 * 111.00039 * 176.81003 * 17 16 15 19 19 C 1.50704 * 109.47193 * 313.79678 * 18 17 16 20 20 N 1.30498 * 125.64838 * 275.02624 * 19 18 17 21 21 C 1.34130 * 109.25243 * 180.02562 * 20 19 18 22 22 C 1.34658 * 108.02284 * 359.97438 * 21 20 19 23 23 N 1.35036 * 125.64719 * 94.72029 * 19 18 17 24 24 H 0.97005 * 126.40090 * 0.02562 * 23 19 18 25 25 C 1.46957 * 110.87793 * 300.67770 * 17 16 15 26 26 C 1.46964 * 111.00113 * 169.99858 * 14 13 12 27 27 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 28 28 C 1.37624 * 120.24713 * 0.02562 * 27 12 11 29 29 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 31 31 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 32 32 H 1.08993 * 109.47129 * 30.01745 * 13 12 11 33 33 H 1.09003 * 109.47143 * 150.02411 * 13 12 11 34 34 H 1.09001 * 109.48584 * 296.77885 * 15 14 13 35 35 H 1.09000 * 109.48662 * 56.84098 * 15 14 13 36 36 H 1.08994 * 109.49045 * 298.43548 * 16 15 14 37 37 H 1.09003 * 109.48478 * 178.36551 * 16 15 14 38 38 H 1.09002 * 109.47380 * 73.79803 * 18 17 16 39 39 H 1.09001 * 109.46979 * 193.79880 * 18 17 16 40 40 H 1.08005 * 125.98450 * 180.02562 * 21 20 19 41 41 H 1.08006 * 126.59603 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.48956 * 299.35464 * 25 17 16 43 43 H 1.08994 * 109.49186 * 179.28590 * 25 17 16 44 44 H 1.09000 * 109.48660 * 303.16269 * 26 14 13 45 45 H 1.09004 * 109.48480 * 63.20084 * 26 14 13 46 46 H 1.07997 * 119.87614 * 179.97438 * 27 12 11 47 47 H 1.08005 * 120.12321 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6431 -6.0300 1.4747 14 7 -1.6872 -6.3358 0.4876 15 6 -2.7558 -5.3276 0.5218 16 6 -3.7807 -5.6372 -0.5720 17 7 -4.3258 -6.9856 -0.3615 18 6 -5.3698 -7.2913 -1.3486 19 6 -6.3145 -6.1223 -1.4592 20 7 -7.3429 -5.8998 -0.6873 21 6 -7.9528 -4.7708 -1.0776 22 6 -7.2763 -4.2745 -2.1309 23 7 -6.2334 -5.1284 -2.3698 24 1 -5.5633 -5.0381 -3.0653 25 6 -3.2572 -7.9937 -0.3957 26 6 -2.2323 -7.6843 0.6980 27 6 -0.4153 -3.5384 1.5507 28 6 0.2173 -2.3675 1.2002 29 1 -0.4850 0.8400 0.0004 30 1 2.6845 -3.6912 -0.7499 31 1 1.5348 -5.7604 -0.0945 32 1 0.0779 -6.8468 1.5058 33 1 -1.0973 -5.9086 2.4582 34 1 -3.2453 -5.3494 1.4955 35 1 -2.3289 -4.3393 0.3510 36 1 -3.2972 -5.5887 -1.5476 37 1 -4.5892 -4.9074 -0.5297 38 1 -4.9091 -7.4791 -2.3184 39 1 -5.9220 -8.1759 -1.0312 40 1 -8.8319 -4.3355 -0.6257 41 1 -7.5095 -3.3738 -2.6794 42 1 -2.7677 -7.9720 -1.3693 43 1 -3.6840 -8.9820 -0.2249 44 1 -1.4237 -8.4140 0.6558 45 1 -2.7155 -7.7329 1.6739 46 1 -1.2849 -3.5093 2.1905 47 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343551666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:58 Heat of formation + Delta-G solvation = 94.328027 kcal Electronic energy + Delta-G solvation = -27257.703883 eV Core-core repulsion = 23633.971284 eV Total energy + Delta-G solvation = -3623.732599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21036 -39.22251 -37.58278 -35.51479 -33.63903 -32.58695 -31.32661 -30.68409 -29.90984 -29.26097 -27.80387 -26.02548 -24.23309 -23.52533 -22.52302 -21.66979 -20.95889 -20.61909 -19.82277 -19.50628 -18.00837 -17.29853 -16.48705 -15.42688 -15.17168 -14.92741 -14.88433 -14.78515 -14.69745 -14.14130 -13.94452 -13.79621 -13.75679 -13.41069 -13.28252 -12.76421 -12.50748 -12.23356 -12.07704 -11.90316 -11.58970 -11.37578 -11.17451 -11.04713 -11.01058 -10.79349 -10.75249 -10.43107 -10.26609 -10.13985 -10.10393 -9.55501 -9.38556 -9.14375 -8.66135 -8.35668 -7.93565 -7.43100 -7.28638 -6.77066 -4.35626 1.87494 2.71876 2.93091 3.01445 3.05329 3.08105 3.11052 3.15853 3.91801 3.93742 4.20573 4.27931 4.69260 4.76067 4.94319 5.08092 5.16324 5.18533 5.31055 5.39502 5.47218 5.49505 5.62127 5.65573 5.72088 5.80862 5.84057 5.94384 5.98546 6.02442 6.20935 6.25262 6.36127 6.38665 6.41498 6.60937 6.85413 6.92805 6.95232 7.06889 7.19868 7.26065 7.37493 7.46478 7.48992 7.62011 7.88935 7.99058 8.05407 8.14478 8.30290 8.63948 8.89398 8.97622 10.17198 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003093 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.729161 B = 9051.632123 C =10838.285465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.070 4.070 12 C -0.206 4.206 13 C 0.121 3.879 14 N -0.533 5.533 15 C 0.061 3.939 16 C 0.059 3.941 17 N -0.530 5.530 18 C 0.141 3.859 19 C 0.212 3.788 20 N -0.473 5.473 21 C -0.031 4.031 22 C -0.052 4.052 23 N -0.567 5.567 24 H 0.419 0.581 25 C 0.060 3.940 26 C 0.055 3.945 27 C -0.095 4.095 28 C -0.165 4.165 29 H 0.279 0.721 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.169 0.831 41 H 0.177 0.823 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.083 0.917 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 -10.169 -4.084 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.248 4.248 11 C -0.089 4.089 12 C -0.208 4.208 13 C -0.005 4.005 14 N -0.258 5.258 15 C -0.067 4.067 16 C -0.069 4.069 17 N -0.256 5.256 18 C 0.012 3.988 19 C -0.052 4.052 20 N -0.193 5.193 21 C -0.179 4.179 22 C -0.186 4.186 23 N -0.171 5.171 24 H 0.256 0.744 25 C -0.068 4.068 26 C -0.073 4.073 27 C -0.114 4.114 28 C -0.184 4.184 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.396 -10.517 -3.406 15.877 hybrid contribution 0.754 1.610 -1.142 2.113 sum -10.643 -8.907 -4.548 14.605 Atomic orbital electron populations 1.69832 1.07571 1.29002 1.35548 1.25893 0.94695 1.01252 0.92258 0.86308 0.81059 0.81095 0.78536 1.18409 1.20045 1.19713 1.19626 0.98049 0.91268 1.40343 0.90505 1.17618 0.91064 0.92015 0.88376 1.20971 1.03958 0.92970 1.06892 1.20312 0.95335 0.96276 0.96935 1.18849 1.00569 0.92543 1.08849 1.20716 0.92114 0.96404 0.91304 1.62302 1.11531 1.00958 1.51016 1.22131 0.90572 0.97345 0.96689 1.22234 0.96753 0.89651 0.98283 1.62290 1.11819 1.03134 1.48394 1.20417 0.90548 0.93128 0.94689 1.22971 0.98185 0.93598 0.90478 1.70252 1.07006 1.16951 1.25063 1.22382 1.02665 0.95166 0.97717 1.22795 0.92847 0.99218 1.03776 1.43408 1.24706 1.20567 1.28372 0.74375 1.22166 0.91079 0.94778 0.98731 1.22124 0.96250 0.91984 0.96978 1.20532 0.98229 0.92875 0.99761 1.21279 0.99371 0.96603 1.01181 0.91022 0.89192 0.89585 0.91717 0.95731 0.94746 0.88762 0.94395 0.90780 0.93386 0.87691 0.81346 0.80614 0.93896 0.90327 0.90508 0.94402 0.89927 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.95 55.55 0.61 -19.77 16 2 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.96 5.57 -106.83 -0.60 2.36 16 10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 12 C -0.21 -4.39 4.92 -104.33 -0.51 -4.91 16 13 C 0.12 2.13 5.11 -4.98 -0.03 2.10 16 14 N -0.53 -8.71 4.70 -235.91 -1.11 -9.82 16 15 C 0.06 1.02 5.24 -3.77 -0.02 1.00 16 16 C 0.06 0.85 5.10 -3.77 -0.02 0.83 16 17 N -0.53 -6.75 4.85 -235.92 -1.14 -7.90 16 18 C 0.14 1.50 5.91 -4.98 -0.03 1.48 16 19 C 0.21 2.55 5.75 -155.42 -0.89 1.66 16 20 N -0.47 -6.65 11.25 -10.82 -0.12 -6.77 16 21 C -0.03 -0.36 11.87 -17.82 -0.21 -0.57 16 22 C -0.05 -0.51 12.04 -16.56 -0.20 -0.70 16 23 N -0.57 -5.62 5.63 -10.23 -0.06 -5.68 16 24 H 0.42 3.18 8.96 -40.82 -0.37 2.81 16 25 C 0.06 0.69 5.58 -3.77 -0.02 0.67 16 26 C 0.06 0.73 5.61 -3.76 -0.02 0.71 16 27 C -0.10 -2.17 7.88 -39.66 -0.31 -2.49 16 28 C -0.16 -4.24 8.70 -38.87 -0.34 -4.57 16 29 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 30 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.06 1.05 7.96 -51.93 -0.41 0.64 16 33 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.85 5.94 -51.93 -0.31 1.54 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.12 6.32 -51.93 -0.33 0.79 16 38 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 1.76 7.98 -52.49 -0.42 1.34 16 47 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -29.84 376.05 -12.78 -42.62 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.19 Total: 9.22 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -4.39 Total: -21.10 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.82 Total: -49.94 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.84 -12.78 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343551666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.944 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds