Wall clock time and date at job start Tue Mar 31 2020 14:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50692 * 119.75360 * 179.69837 * 12 11 10 14 14 N 1.46905 * 109.46934 * 270.01935 * 13 12 11 15 15 C 1.46957 * 111.00204 * 293.80069 * 14 13 12 16 16 C 1.53050 * 109.36296 * 176.81120 * 15 14 13 17 17 N 1.46958 * 109.36712 * 58.40356 * 16 15 14 18 18 C 1.46892 * 111.00039 * 176.81003 * 17 16 15 19 19 C 1.50704 * 109.47193 * 313.79678 * 18 17 16 20 20 N 1.30498 * 125.64838 * 275.02624 * 19 18 17 21 21 C 1.34130 * 109.25243 * 180.02562 * 20 19 18 22 22 C 1.34658 * 108.02284 * 359.97438 * 21 20 19 23 23 N 1.35036 * 125.64719 * 94.72029 * 19 18 17 24 24 H 0.97005 * 126.40090 * 0.02562 * 23 19 18 25 25 C 1.46957 * 110.87793 * 300.67770 * 17 16 15 26 26 C 1.46964 * 111.00113 * 169.99858 * 14 13 12 27 27 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 28 28 C 1.37624 * 120.24713 * 0.02562 * 27 12 11 29 29 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 31 31 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 32 32 H 1.08993 * 109.47129 * 30.01745 * 13 12 11 33 33 H 1.09003 * 109.47143 * 150.02411 * 13 12 11 34 34 H 1.09001 * 109.48584 * 296.77885 * 15 14 13 35 35 H 1.09000 * 109.48662 * 56.84098 * 15 14 13 36 36 H 1.08994 * 109.49045 * 298.43548 * 16 15 14 37 37 H 1.09003 * 109.48478 * 178.36551 * 16 15 14 38 38 H 1.09002 * 109.47380 * 73.79803 * 18 17 16 39 39 H 1.09001 * 109.46979 * 193.79880 * 18 17 16 40 40 H 1.08005 * 125.98450 * 180.02562 * 21 20 19 41 41 H 1.08006 * 126.59603 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.48956 * 299.35464 * 25 17 16 43 43 H 1.08994 * 109.49186 * 179.28590 * 25 17 16 44 44 H 1.09000 * 109.48660 * 303.16269 * 26 14 13 45 45 H 1.09004 * 109.48480 * 63.20084 * 26 14 13 46 46 H 1.07997 * 119.87614 * 179.97438 * 27 12 11 47 47 H 1.08005 * 120.12321 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6431 -6.0300 1.4747 14 7 -1.6872 -6.3358 0.4876 15 6 -2.7558 -5.3276 0.5218 16 6 -3.7807 -5.6372 -0.5720 17 7 -4.3258 -6.9856 -0.3615 18 6 -5.3698 -7.2913 -1.3486 19 6 -6.3145 -6.1223 -1.4592 20 7 -7.3429 -5.8998 -0.6873 21 6 -7.9528 -4.7708 -1.0776 22 6 -7.2763 -4.2745 -2.1309 23 7 -6.2334 -5.1284 -2.3698 24 1 -5.5633 -5.0381 -3.0653 25 6 -3.2572 -7.9937 -0.3957 26 6 -2.2323 -7.6843 0.6980 27 6 -0.4153 -3.5384 1.5507 28 6 0.2173 -2.3675 1.2002 29 1 -0.4850 0.8400 0.0004 30 1 2.6845 -3.6912 -0.7499 31 1 1.5348 -5.7604 -0.0945 32 1 0.0779 -6.8468 1.5058 33 1 -1.0973 -5.9086 2.4582 34 1 -3.2453 -5.3494 1.4955 35 1 -2.3289 -4.3393 0.3510 36 1 -3.2972 -5.5887 -1.5476 37 1 -4.5892 -4.9074 -0.5297 38 1 -4.9091 -7.4791 -2.3184 39 1 -5.9220 -8.1759 -1.0312 40 1 -8.8319 -4.3355 -0.6257 41 1 -7.5095 -3.3738 -2.6794 42 1 -2.7677 -7.9720 -1.3693 43 1 -3.6840 -8.9820 -0.2249 44 1 -1.4237 -8.4140 0.6558 45 1 -2.7155 -7.7329 1.6739 46 1 -1.2849 -3.5093 2.1905 47 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343551666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:57 Heat of formation + Delta-G solvation = 75.100740 kcal Electronic energy + Delta-G solvation = -27258.537640 eV Core-core repulsion = 23633.971284 eV Total energy + Delta-G solvation = -3624.566356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.03878 -40.45402 -39.25143 -36.82074 -35.39710 -33.44132 -32.65002 -31.88849 -31.28273 -31.03734 -29.11129 -27.41612 -25.58897 -24.64612 -23.92982 -22.78833 -22.48613 -21.57203 -21.48359 -20.65542 -19.21243 -18.83029 -17.52490 -17.19923 -16.40289 -16.19997 -16.03188 -15.88380 -15.77992 -15.63151 -15.27829 -15.08426 -14.81002 -14.67898 -14.52745 -14.19613 -13.82323 -13.67894 -13.42596 -13.28672 -13.07163 -12.87147 -12.71962 -12.55826 -12.37073 -12.24052 -12.16687 -11.83260 -11.76869 -11.31895 -11.22509 -11.02819 -11.00605 -10.98557 -9.53404 -9.39936 -9.28172 -9.22763 -9.08776 -8.63101 -6.32565 0.94234 1.06599 1.17113 1.36892 1.48556 1.52036 2.09968 2.20080 2.22906 2.66492 2.98567 3.14041 3.40717 3.78419 3.86873 4.02544 4.06554 4.17002 4.24876 4.32259 4.38934 4.43835 4.47717 4.50574 4.55664 4.62674 4.64841 4.69392 4.78675 4.81558 4.83831 4.92444 5.02691 5.05748 5.07935 5.14035 5.17161 5.38517 5.48901 5.72002 5.79545 5.87696 5.93027 5.98186 6.11443 6.13118 6.27040 6.33265 6.41135 6.46554 6.71947 6.95628 7.05596 7.15064 8.33476 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003093 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.729161 B = 9051.632123 C =10838.285465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.243 4.243 11 C -0.070 4.070 12 C -0.192 4.192 13 C 0.125 3.875 14 N -0.539 5.539 15 C 0.066 3.934 16 C 0.074 3.926 17 N -0.541 5.541 18 C 0.144 3.856 19 C 0.198 3.802 20 N -0.513 5.513 21 C -0.061 4.061 22 C -0.041 4.041 23 N -0.561 5.561 24 H 0.429 0.571 25 C 0.063 3.937 26 C 0.054 3.946 27 C -0.096 4.096 28 C -0.189 4.189 29 H 0.286 0.714 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.182 0.818 41 H 0.209 0.791 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.093 0.907 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 -11.705 -4.926 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.263 4.263 11 C -0.089 4.089 12 C -0.194 4.194 13 C -0.002 4.002 14 N -0.264 5.264 15 C -0.062 4.062 16 C -0.054 4.054 17 N -0.267 5.267 18 C 0.015 3.985 19 C -0.067 4.067 20 N -0.233 5.233 21 C -0.208 4.208 22 C -0.175 4.175 23 N -0.166 5.166 24 H 0.269 0.731 25 C -0.064 4.064 26 C -0.074 4.074 27 C -0.114 4.114 28 C -0.208 4.208 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.199 0.801 41 H 0.225 0.775 42 H 0.064 0.936 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.052 0.948 46 H 0.111 0.889 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.612 -12.082 -4.261 17.291 hybrid contribution 0.722 1.945 -0.861 2.246 sum -10.890 -10.138 -5.122 15.735 Atomic orbital electron populations 1.69888 1.08988 1.30293 1.36155 1.26723 0.95452 1.04421 0.91257 0.85199 0.79466 0.76358 0.78922 1.18198 1.18998 1.18984 1.19850 0.98200 0.92599 1.42550 0.90878 1.17940 0.91887 0.93108 0.89290 1.21178 1.04524 0.93281 1.07308 1.20624 0.95073 0.96738 0.96464 1.19256 0.99810 0.93607 1.06689 1.20669 0.92859 0.95019 0.91611 1.62235 1.11301 1.02409 1.50457 1.21966 0.91113 0.96094 0.97043 1.21955 0.95577 0.90880 0.97028 1.62253 1.12471 1.02353 1.49635 1.20495 0.89784 0.92886 0.95300 1.23187 0.98226 0.94431 0.90814 1.70187 1.08308 1.18369 1.26473 1.22776 1.03803 0.95308 0.98959 1.23309 0.91786 0.99505 1.02932 1.43433 1.24883 1.20067 1.28205 0.73095 1.22232 0.90454 0.95584 0.98178 1.22266 0.97390 0.90170 0.97525 1.20692 0.98176 0.92895 0.99681 1.21210 1.00315 0.96812 1.02484 0.90320 0.88721 0.86610 0.89416 0.95543 0.95839 0.92202 0.94601 0.91887 0.91113 0.86812 0.80097 0.77466 0.93567 0.87448 0.88382 0.94764 0.88927 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.96 10.95 21.83 0.24 -43.72 16 2 C 0.04 1.84 5.15 85.26 0.44 2.28 16 3 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.08 4.39 5.57 -21.29 -0.12 4.28 16 10 C -0.24 -12.07 9.80 22.73 0.22 -11.84 16 11 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 12 C -0.19 -8.02 4.92 -19.68 -0.10 -8.12 16 13 C 0.13 4.13 5.11 85.55 0.44 4.57 16 14 N -0.54 -16.52 4.70 -900.27 -4.23 -20.76 16 15 C 0.07 2.21 5.24 86.31 0.45 2.66 16 16 C 0.07 2.08 5.10 86.31 0.44 2.52 16 17 N -0.54 -12.63 4.85 -900.32 -4.37 -17.00 16 18 C 0.14 2.74 5.91 85.56 0.51 3.25 16 19 C 0.20 4.52 5.75 138.13 0.79 5.32 16 20 N -0.51 -14.18 11.25 -188.14 -2.12 -16.30 16 21 C -0.06 -1.39 11.87 83.52 0.99 -0.40 16 22 C -0.04 -0.73 12.04 83.08 1.00 0.27 16 23 N -0.56 -10.31 5.63 -186.27 -1.05 -11.36 16 24 H 0.43 5.78 8.96 -92.70 -0.83 4.94 16 25 C 0.06 1.23 5.58 86.31 0.48 1.71 16 26 C 0.05 1.26 5.61 86.31 0.48 1.74 16 27 C -0.10 -4.46 7.88 22.22 0.18 -4.29 16 28 C -0.19 -10.11 8.70 22.73 0.20 -9.91 16 29 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 30 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.09 2.53 7.96 -2.39 -0.02 2.51 16 33 H 0.03 0.87 8.06 -2.39 -0.02 0.85 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 2.39 5.94 -2.39 -0.01 2.38 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.90 6.32 -2.39 -0.02 1.88 16 38 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 45 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.09 4.04 7.98 -2.91 -0.02 4.02 16 47 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 Total: -1.00 -67.18 376.05 -2.52 -69.71 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.14 Total: 34.85 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 6.83 Total: -36.22 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -11.53 Total: -109.13 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -67.18 -2.52 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343551666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.809 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds