Wall clock time and date at job start Tue Mar 31 2020 14:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47259 * 270.00193 * 3 2 1 5 5 H 1.48498 * 109.47478 * 30.00745 * 3 2 1 6 6 H 1.48502 * 109.46872 * 150.00394 * 3 2 1 7 7 C 1.37878 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.38685 * 120.00474 * 179.97438 * 11 10 9 13 13 N 1.31681 * 119.79580 * 5.34320 * 12 11 10 14 14 C 1.34106 * 119.79594 * 179.97438 * 13 12 11 15 15 C 1.40416 * 120.86811 * 179.97438 * 14 13 12 16 16 C 1.36209 * 119.76415 * 180.02562 * 15 14 13 17 17 C 1.39239 * 120.90343 * 359.97438 * 16 15 14 18 18 C 1.36215 * 120.89700 * 0.02562 * 17 16 15 19 19 C 1.40413 * 119.76043 * 359.97438 * 18 17 16 20 20 N 1.34111 * 120.85552 * 179.97438 * 19 18 17 21 21 C 1.31688 * 119.79155 * 179.75414 * 20 19 18 22 22 N 1.38690 * 119.79668 * 180.25907 * 21 20 19 23 23 C 1.46842 * 111.00428 * 62.91200 * 22 21 20 24 24 C 1.53040 * 109.52204 * 174.15892 * 23 22 21 25 25 C 1.53121 * 109.27772 * 59.17963 * 24 23 22 26 26 C 1.53120 * 109.16212 * 302.34684 * 25 24 23 27 27 C 1.46845 * 110.99557 * 298.69829 * 22 21 20 28 28 H 0.96997 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46482 * 60.00502 * 9 7 2 30 30 H 1.08993 * 109.46994 * 300.00378 * 9 7 2 31 31 H 1.09001 * 109.47537 * 300.00369 * 10 9 7 32 32 H 1.09002 * 109.47456 * 60.00683 * 10 9 7 33 33 H 0.97002 * 119.99490 * 359.97438 * 11 10 9 34 34 H 1.08002 * 120.11472 * 359.97438 * 15 14 13 35 35 H 1.08006 * 119.55230 * 179.97438 * 16 15 14 36 36 H 1.07998 * 119.54900 * 180.02562 * 17 16 15 37 37 H 1.07995 * 120.12131 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46186 * 294.17819 * 23 22 21 39 39 H 1.09004 * 109.46316 * 54.14826 * 23 22 21 40 40 H 1.08996 * 109.50425 * 299.23549 * 24 23 22 41 41 H 1.09004 * 109.50175 * 179.11720 * 24 23 22 42 42 H 1.09000 * 109.52327 * 182.43742 * 25 24 23 43 43 H 1.09001 * 109.57108 * 62.27840 * 25 24 23 44 44 H 1.08998 * 109.49755 * 297.71121 * 26 25 24 45 45 H 1.08997 * 109.49969 * 177.59547 * 26 25 24 46 46 H 1.08997 * 109.46800 * 305.86059 * 27 22 21 47 47 H 1.08995 * 109.46477 * 65.84170 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.2061 -6.1319 -0.0018 13 7 3.5186 -6.1298 0.1045 14 6 4.1890 -7.2913 0.1044 15 6 5.5885 -7.3153 0.2161 16 6 6.2467 -8.5078 0.2130 17 6 5.5507 -9.7085 0.1010 18 6 4.1931 -9.7224 -0.0091 19 6 3.4815 -8.5119 -0.0094 20 7 2.1447 -8.5000 -0.1171 21 6 1.4980 -7.3529 -0.1103 22 7 0.1152 -7.3406 -0.2162 23 6 -0.5063 -8.0194 0.9280 24 6 -2.0266 -7.8604 0.8529 25 6 -2.5338 -8.4641 -0.4596 26 6 -1.8352 -7.7729 -1.6338 27 6 -0.3204 -7.9344 -1.4866 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 -0.8905 32 1 2.8718 -3.6045 0.8895 33 1 0.5427 -4.9308 -0.0011 34 1 6.1411 -6.3914 0.3032 35 1 7.3233 -8.5222 0.2986 36 1 6.0947 -10.6415 0.1013 37 1 3.6660 -10.6609 -0.0957 38 1 -0.2503 -9.0787 0.9048 39 1 -0.1403 -7.5778 1.8550 40 1 -2.2840 -6.8019 0.8902 41 1 -2.4885 -8.3777 1.6939 42 1 -3.6107 -8.3145 -0.5372 43 1 -2.3117 -9.5310 -0.4807 44 1 -2.0896 -6.7130 -1.6358 45 1 -2.1604 -8.2276 -2.5695 46 1 0.1805 -7.4311 -2.3135 47 1 -0.0656 -8.9941 -1.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343608644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:47 Heat of formation + Delta-G solvation = 64.317629 kcal Electronic energy + Delta-G solvation = -27443.032165 eV Core-core repulsion = 23817.998218 eV Total energy + Delta-G solvation = -3625.033947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35159 -39.22628 -37.51854 -35.79953 -34.39124 -33.32410 -32.64117 -30.98574 -30.43513 -29.75715 -28.39617 -25.71851 -24.70906 -23.20996 -22.94539 -22.72468 -22.17246 -20.83700 -19.89050 -18.61877 -18.02641 -17.31616 -16.37674 -15.70244 -15.57474 -15.53725 -14.72805 -14.66197 -14.51541 -14.43764 -13.96292 -13.83413 -13.74961 -13.66394 -13.46419 -13.45556 -12.42046 -12.29463 -12.01321 -11.93771 -11.71157 -11.43876 -11.36277 -11.30223 -11.14385 -11.01311 -10.90317 -10.64099 -10.61522 -10.57626 -10.38858 -9.61186 -9.39361 -9.34101 -9.17421 -8.57773 -8.51080 -8.42140 -7.31584 -6.08022 -4.10820 0.37191 0.92454 2.11268 2.95060 3.29837 3.34048 3.36417 3.40201 3.60872 4.20029 4.29288 4.40421 4.45382 4.64088 4.70864 4.75545 4.79710 4.91497 5.09931 5.11831 5.28972 5.29042 5.29661 5.37976 5.43651 5.50730 5.51956 5.67423 5.73774 5.76759 5.81927 5.98940 6.02966 6.03090 6.15080 6.24736 6.27091 6.34561 6.37128 6.41306 6.70016 6.76796 6.77074 6.99318 7.38177 7.41016 7.61504 7.64129 7.83234 7.91788 8.24909 8.43744 8.94970 9.53752 11.03573 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.003809 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.258518 B = 7348.450341 C =10137.358638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.128 3.872 11 N -0.677 5.677 12 C 0.411 3.589 13 N -0.514 5.514 14 C 0.147 3.853 15 C -0.107 4.107 16 C -0.090 4.090 17 C -0.140 4.140 18 C -0.061 4.061 19 C 0.019 3.981 20 N -0.432 5.432 21 C 0.240 3.760 22 N -0.480 5.480 23 C 0.062 3.938 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.118 4.118 27 C 0.063 3.937 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -21.562 -0.394 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.005 3.995 11 N -0.306 5.306 12 C 0.154 3.846 13 N -0.242 5.242 14 C 0.021 3.979 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.160 4.160 18 C -0.081 4.081 19 C -0.107 4.107 20 N -0.148 5.148 21 C -0.016 4.016 22 N -0.204 5.204 23 C -0.065 4.065 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.064 4.064 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.436 -20.850 -0.383 20.903 hybrid contribution 0.308 0.164 -0.021 0.350 sum 1.744 -20.686 -0.404 20.763 Atomic orbital electron populations 1.69959 1.06069 1.26827 1.50335 1.24988 0.94875 0.99350 0.95027 0.86528 0.79851 0.83092 0.78177 1.20584 1.21186 1.19735 1.21026 0.93194 0.90319 1.51355 0.92268 1.19319 0.94239 0.91022 0.97911 1.21797 0.95939 0.80952 1.00784 1.45219 1.09519 1.02528 1.73343 1.19346 0.88677 0.86944 0.89619 1.68460 1.05517 1.27061 1.23131 1.19287 0.94921 0.88135 0.95571 1.20707 0.91437 0.98990 1.01576 1.20884 1.00164 0.92009 0.97898 1.20742 0.93903 0.98298 1.03084 1.20638 0.93770 0.96083 0.97573 1.19126 0.89197 0.94428 1.07907 1.68532 1.08710 1.28553 1.08961 1.20483 0.90853 0.88541 1.01690 1.59875 1.00969 1.55432 1.04144 1.22134 0.94741 0.97170 0.92426 1.21616 0.93897 1.02457 0.97567 1.21578 0.99926 0.99504 0.94808 1.21618 0.93582 1.02193 0.98164 1.22116 0.96174 0.98041 0.90040 0.92868 0.95921 0.95929 0.92614 0.92360 0.74354 0.84707 0.85417 0.85610 0.85426 0.93423 0.90809 0.90496 0.91261 0.91626 0.92316 0.90500 0.91266 0.90801 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.13 2.70 5.63 -4.04 -0.02 2.68 16 11 N -0.68 -12.39 5.67 -60.00 -0.34 -12.73 16 12 C 0.41 7.32 7.51 -155.01 -1.16 6.16 16 13 N -0.51 -9.49 9.66 -9.86 -0.10 -9.58 16 14 C 0.15 2.40 6.58 -84.79 -0.56 1.84 16 15 C -0.11 -1.44 9.97 -39.49 -0.39 -1.83 16 16 C -0.09 -0.94 9.95 -39.94 -0.40 -1.34 16 17 C -0.14 -1.41 9.95 -39.94 -0.40 -1.81 16 18 C -0.06 -0.74 9.97 -39.49 -0.39 -1.14 16 19 C 0.02 0.28 6.58 -84.79 -0.56 -0.27 16 20 N -0.43 -6.73 9.82 -9.86 -0.10 -6.83 16 21 C 0.24 3.79 5.33 -155.00 -0.83 2.96 16 22 N -0.48 -6.43 3.77 -172.74 -0.65 -7.08 16 23 C 0.06 0.74 5.27 -3.84 -0.02 0.72 16 24 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 25 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 26 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 27 C 0.06 0.75 5.25 -3.83 -0.02 0.73 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.42 7.25 7.74 -40.82 -0.32 6.93 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 47 H 0.05 0.58 8.01 -51.93 -0.42 0.17 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -30.34 382.62 -12.94 -43.29 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.45 Total: 4.28 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -5.79 Total: -8.07 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.45 Total: -61.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.34 -12.94 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343608644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.604 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds