Wall clock time and date at job start Tue Mar 31 2020 14:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47259 * 270.00193 * 3 2 1 5 5 H 1.48498 * 109.47478 * 30.00745 * 3 2 1 6 6 H 1.48502 * 109.46872 * 150.00394 * 3 2 1 7 7 C 1.37878 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.38685 * 120.00474 * 179.97438 * 11 10 9 13 13 N 1.31681 * 119.79580 * 5.34320 * 12 11 10 14 14 C 1.34106 * 119.79594 * 179.97438 * 13 12 11 15 15 C 1.40416 * 120.86811 * 179.97438 * 14 13 12 16 16 C 1.36209 * 119.76415 * 180.02562 * 15 14 13 17 17 C 1.39239 * 120.90343 * 359.97438 * 16 15 14 18 18 C 1.36215 * 120.89700 * 0.02562 * 17 16 15 19 19 C 1.40413 * 119.76043 * 359.97438 * 18 17 16 20 20 N 1.34111 * 120.85552 * 179.97438 * 19 18 17 21 21 C 1.31688 * 119.79155 * 179.75414 * 20 19 18 22 22 N 1.38690 * 119.79668 * 180.25907 * 21 20 19 23 23 C 1.46842 * 111.00428 * 62.91200 * 22 21 20 24 24 C 1.53040 * 109.52204 * 174.15892 * 23 22 21 25 25 C 1.53121 * 109.27772 * 59.17963 * 24 23 22 26 26 C 1.53120 * 109.16212 * 302.34684 * 25 24 23 27 27 C 1.46845 * 110.99557 * 298.69829 * 22 21 20 28 28 H 0.96997 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46482 * 60.00502 * 9 7 2 30 30 H 1.08993 * 109.46994 * 300.00378 * 9 7 2 31 31 H 1.09001 * 109.47537 * 300.00369 * 10 9 7 32 32 H 1.09002 * 109.47456 * 60.00683 * 10 9 7 33 33 H 0.97002 * 119.99490 * 359.97438 * 11 10 9 34 34 H 1.08002 * 120.11472 * 359.97438 * 15 14 13 35 35 H 1.08006 * 119.55230 * 179.97438 * 16 15 14 36 36 H 1.07998 * 119.54900 * 180.02562 * 17 16 15 37 37 H 1.07995 * 120.12131 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46186 * 294.17819 * 23 22 21 39 39 H 1.09004 * 109.46316 * 54.14826 * 23 22 21 40 40 H 1.08996 * 109.50425 * 299.23549 * 24 23 22 41 41 H 1.09004 * 109.50175 * 179.11720 * 24 23 22 42 42 H 1.09000 * 109.52327 * 182.43742 * 25 24 23 43 43 H 1.09001 * 109.57108 * 62.27840 * 25 24 23 44 44 H 1.08998 * 109.49755 * 297.71121 * 26 25 24 45 45 H 1.08997 * 109.49969 * 177.59547 * 26 25 24 46 46 H 1.08997 * 109.46800 * 305.86059 * 27 22 21 47 47 H 1.08995 * 109.46477 * 65.84170 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.2061 -6.1319 -0.0018 13 7 3.5186 -6.1298 0.1045 14 6 4.1890 -7.2913 0.1044 15 6 5.5885 -7.3153 0.2161 16 6 6.2467 -8.5078 0.2130 17 6 5.5507 -9.7085 0.1010 18 6 4.1931 -9.7224 -0.0091 19 6 3.4815 -8.5119 -0.0094 20 7 2.1447 -8.5000 -0.1171 21 6 1.4980 -7.3529 -0.1103 22 7 0.1152 -7.3406 -0.2162 23 6 -0.5063 -8.0194 0.9280 24 6 -2.0266 -7.8604 0.8529 25 6 -2.5338 -8.4641 -0.4596 26 6 -1.8352 -7.7729 -1.6338 27 6 -0.3204 -7.9344 -1.4866 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 -0.8905 32 1 2.8718 -3.6045 0.8895 33 1 0.5427 -4.9308 -0.0011 34 1 6.1411 -6.3914 0.3032 35 1 7.3233 -8.5222 0.2986 36 1 6.0947 -10.6415 0.1013 37 1 3.6660 -10.6609 -0.0957 38 1 -0.2503 -9.0787 0.9048 39 1 -0.1403 -7.5778 1.8550 40 1 -2.2840 -6.8019 0.8902 41 1 -2.4885 -8.3777 1.6939 42 1 -3.6107 -8.3145 -0.5372 43 1 -2.3117 -9.5310 -0.4807 44 1 -2.0896 -6.7130 -1.6358 45 1 -2.1604 -8.2276 -2.5695 46 1 0.1805 -7.4311 -2.3135 47 1 -0.0656 -8.9941 -1.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343608644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:46 Heat of formation + Delta-G solvation = 47.574136 kcal Electronic energy + Delta-G solvation = -27443.758218 eV Core-core repulsion = 23817.998218 eV Total energy + Delta-G solvation = -3625.760000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50800 -40.20395 -38.68679 -37.13058 -35.69606 -34.95070 -33.93995 -32.00253 -31.87195 -30.85139 -29.76727 -27.14394 -26.13237 -24.33194 -24.09115 -23.83045 -23.26235 -22.55197 -20.78547 -19.75442 -19.21601 -18.69544 -18.15621 -16.92932 -16.74774 -16.64698 -16.36242 -15.87131 -15.67131 -15.44450 -15.37372 -15.28786 -14.88818 -14.60834 -14.37575 -14.30593 -14.26349 -13.45799 -13.31116 -13.23717 -12.88029 -12.82858 -12.66297 -12.52470 -12.51636 -12.46715 -12.18911 -12.14298 -11.67022 -11.58373 -11.48449 -11.40579 -11.40429 -10.76208 -10.54390 -10.35981 -9.69237 -9.52635 -8.63943 -8.23044 -6.33897 -0.72043 -0.21475 0.99454 1.41672 1.42594 1.53953 1.89501 2.09405 2.37597 2.45313 3.07399 3.11508 3.20672 3.29294 3.52779 3.80906 3.91173 3.92271 4.08708 4.10344 4.24379 4.30440 4.38901 4.43050 4.48743 4.50130 4.52158 4.60615 4.64809 4.80061 4.84924 4.86985 4.95062 5.01467 5.07185 5.21782 5.22290 5.24741 5.28448 5.39041 5.46788 5.48125 5.58536 5.70205 5.78060 5.81993 5.87758 6.06614 6.19594 6.23873 6.54761 6.79279 7.06676 7.35267 8.89089 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.003809 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.258518 B = 7348.450341 C =10137.358638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.157 3.843 11 N -0.684 5.684 12 C 0.392 3.608 13 N -0.539 5.539 14 C 0.114 3.886 15 C -0.129 4.129 16 C -0.069 4.069 17 C -0.117 4.117 18 C -0.073 4.073 19 C 0.004 3.996 20 N -0.433 5.433 21 C 0.235 3.765 22 N -0.486 5.486 23 C 0.065 3.935 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.113 4.113 27 C 0.066 3.934 28 H 0.265 0.735 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.420 0.580 34 H 0.135 0.865 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -23.732 -0.421 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.033 3.967 11 N -0.316 5.316 12 C 0.136 3.864 13 N -0.267 5.267 14 C -0.011 4.011 15 C -0.149 4.149 16 C -0.089 4.089 17 C -0.138 4.138 18 C -0.093 4.093 19 C -0.121 4.121 20 N -0.148 5.148 21 C -0.020 4.020 22 N -0.211 5.211 23 C -0.062 4.062 24 C -0.151 4.151 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.258 0.742 34 H 0.153 0.847 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.993 -23.071 -0.410 23.268 hybrid contribution 0.016 0.633 -0.002 0.633 sum 3.008 -22.438 -0.413 22.643 Atomic orbital electron populations 1.70077 1.07625 1.27959 1.50992 1.25890 0.95777 1.03132 0.94391 0.85432 0.78652 0.78358 0.78529 1.19740 1.20554 1.18906 1.21434 0.93576 0.91704 1.51527 0.92131 1.19107 0.94256 0.91990 0.95962 1.21190 0.94590 0.81266 0.99674 1.44833 1.09294 1.01908 1.75546 1.19490 0.88947 0.87184 0.90746 1.68366 1.06126 1.28978 1.23204 1.19732 0.96245 0.87929 0.97151 1.20917 0.90356 1.00608 1.03054 1.21386 1.02126 0.90817 0.94521 1.21289 0.93140 0.99901 0.99424 1.20958 0.94864 0.95464 0.97967 1.19622 0.89323 0.95453 1.07716 1.68611 1.09095 1.28078 1.09026 1.20467 0.91800 0.87867 1.01855 1.59894 0.99880 1.56132 1.05183 1.22154 0.96105 0.96632 0.91286 1.21616 0.92228 1.02222 0.99047 1.21564 1.00638 0.99628 0.93478 1.21616 0.91932 1.01901 0.99679 1.22131 0.97586 0.97494 0.88861 0.92579 0.97765 0.97804 0.93654 0.93467 0.74150 0.84741 0.81394 0.81199 0.83590 0.93529 0.92156 0.91530 0.89396 0.90013 0.91505 0.91596 0.89450 0.92303 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.05 5.63 86.38 0.49 7.54 16 11 N -0.68 -26.93 5.67 -343.73 -1.95 -28.88 16 12 C 0.39 14.84 7.51 133.99 1.01 15.85 16 13 N -0.54 -20.92 9.66 -185.11 -1.79 -22.71 16 14 C 0.11 3.78 6.58 40.14 0.26 4.05 16 15 C -0.13 -3.35 9.97 22.33 0.22 -3.12 16 16 C -0.07 -1.20 9.95 22.04 0.22 -0.98 16 17 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 18 C -0.07 -1.60 9.97 22.33 0.22 -1.37 16 19 C 0.00 0.13 6.58 40.14 0.26 0.39 16 20 N -0.43 -13.66 9.82 -185.10 -1.82 -15.48 16 21 C 0.24 7.76 5.33 133.98 0.71 8.47 16 22 N -0.49 -13.62 3.77 -700.41 -2.64 -16.26 16 23 C 0.06 1.57 5.27 86.33 0.45 2.02 16 24 C -0.11 -2.14 6.09 30.65 0.19 -1.95 16 25 C -0.12 -1.88 6.00 30.67 0.18 -1.70 16 26 C -0.11 -2.17 6.09 30.65 0.19 -1.98 16 27 C 0.07 1.61 5.25 86.33 0.45 2.06 16 28 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.42 15.81 7.74 -92.71 -0.72 15.09 16 34 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.05 1.12 8.04 -2.39 -0.02 1.10 16 39 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 47 H 0.05 1.14 8.01 -2.39 -0.02 1.12 16 Total: -1.00 -68.56 382.62 0.29 -68.27 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.25 Total: 24.83 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.93 Total: -0.80 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -7.91 Total: -138.41 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.56 0.29 -68.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343608644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.842 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds