Wall clock time and date at job start Tue Mar 31 2020 14:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99489 * 2 1 4 4 C 1.53010 * 109.46673 * 125.00481 * 3 2 1 5 5 N 1.46503 * 109.46820 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99549 * 269.99871 * 5 4 3 7 7 C 1.34775 * 119.99996 * 89.99829 * 5 4 3 8 8 O 1.21670 * 120.00050 * 4.54855 * 7 5 4 9 9 C 1.46914 * 119.99625 * 184.54177 * 7 5 4 10 10 C 1.36379 * 126.77096 * 322.80786 * 9 7 5 11 11 N 1.35466 * 109.76834 * 180.02562 * 10 9 7 12 12 C 1.46501 * 124.78424 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47045 * 265.01954 * 12 11 10 14 14 C 1.50704 * 109.47006 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99815 * 179.72581 * 14 13 12 17 17 N 1.31516 * 119.99823 * 0.27791 * 16 14 13 18 18 Si 1.86792 * 119.99947 * 180.27583 * 16 14 13 19 19 H 1.48499 * 109.47342 * 59.99876 * 18 16 14 20 20 H 1.48501 * 109.47554 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47165 * 300.00072 * 18 16 14 22 22 C 1.37966 * 110.42729 * 0.22772 * 11 10 9 23 23 C 1.39123 * 133.18583 * 180.41789 * 22 11 10 24 24 C 1.37767 * 119.92989 * 179.62770 * 23 22 11 25 25 C 1.38749 * 120.63068 * 359.75291 * 24 23 22 26 26 C 1.37759 * 120.30625 * 359.97438 * 25 24 23 27 27 C 1.39271 * 119.66665 * 0.02562 * 26 25 24 28 28 H 1.08000 * 119.99282 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00326 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00326 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47226 * 5.00929 * 3 2 1 32 32 H 1.08994 * 109.47219 * 244.99839 * 3 2 1 33 33 H 1.08993 * 109.47233 * 59.99856 * 4 3 2 34 34 H 1.09004 * 109.47085 * 300.00067 * 4 3 2 35 35 H 1.09005 * 109.46820 * 264.82004 * 6 5 4 36 36 H 1.09005 * 109.47682 * 24.81915 * 6 5 4 37 37 H 1.08998 * 109.47282 * 144.82300 * 6 5 4 38 38 H 1.07998 * 125.11257 * 359.97438 * 10 9 7 39 39 H 1.09000 * 109.47087 * 145.02288 * 12 11 10 40 40 H 1.08994 * 109.47290 * 25.02511 * 12 11 10 41 41 H 1.09000 * 109.46905 * 60.00223 * 13 12 11 42 42 H 1.08994 * 109.47531 * 300.00409 * 13 12 11 43 43 H 0.97006 * 119.99479 * 179.97438 * 17 16 14 44 44 H 1.08005 * 120.03112 * 359.37980 * 23 22 11 45 45 H 1.07998 * 119.67971 * 179.72953 * 24 23 22 46 46 H 1.08005 * 119.84632 * 179.97438 * 25 24 23 47 47 H 1.07993 * 120.16222 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3331 1.1817 5 7 3.7670 2.6022 1.1821 6 6 5.0332 2.7176 0.4543 7 6 3.2755 3.6634 1.8519 8 8 2.2681 3.5453 2.5238 9 6 3.9564 4.9627 1.7709 10 6 5.3024 5.1775 1.7229 11 7 5.5519 6.5071 1.6530 12 6 6.8881 7.1044 1.5878 13 6 7.3416 7.4944 2.9960 14 6 8.7158 8.1094 2.9288 15 1 9.2155 8.2122 1.9769 16 6 9.3326 8.5465 4.0819 17 7 8.7240 8.4216 5.2410 18 14 11.0327 9.3157 3.9977 19 1 10.9873 10.5237 3.1352 20 1 11.4711 9.6986 5.3639 21 1 11.9918 8.3359 3.4271 22 6 4.3705 7.2197 1.6577 23 6 4.0779 8.5784 1.5965 24 6 2.7667 9.0006 1.6134 25 6 1.7292 8.0822 1.6860 26 6 1.9983 6.7324 1.7417 27 6 3.3194 6.2916 1.7254 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4028 -0.9313 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2355 2.1131 35 1 5.8630 2.5412 1.1388 36 1 5.0602 1.9794 -0.3473 37 1 5.1186 3.7180 0.0300 38 1 6.0558 4.4039 1.7390 39 1 6.8586 7.9926 0.9566 40 1 7.5884 6.3829 1.1672 41 1 7.3711 6.6063 3.6272 42 1 6.6413 8.2159 3.4166 43 1 9.1581 8.7288 6.0523 44 1 4.8781 9.3017 1.5398 45 1 2.5443 10.0566 1.5701 46 1 0.7058 8.4273 1.6989 47 1 1.1890 6.0196 1.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346669908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:47 Heat of formation + Delta-G solvation = 38.012068 kcal Electronic energy + Delta-G solvation = -26993.660781 eV Core-core repulsion = 23335.193388 eV Total energy + Delta-G solvation = -3658.467393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28174 -39.37882 -36.88957 -36.20652 -34.65390 -34.00593 -32.39040 -30.49897 -30.05149 -28.86060 -28.18964 -26.78821 -25.26688 -23.84082 -22.56444 -21.83241 -21.48139 -20.10711 -20.03886 -18.93633 -17.22506 -16.75391 -16.41664 -15.85499 -15.75344 -15.47007 -15.12555 -14.87023 -14.75785 -14.20761 -13.93044 -13.73457 -13.59978 -13.25215 -13.13814 -12.94138 -12.84509 -12.55666 -12.44903 -12.30871 -12.03365 -11.79715 -11.41438 -11.29903 -11.20269 -11.13654 -11.07653 -10.71669 -10.63200 -10.29781 -9.92253 -9.73518 -9.63441 -9.46320 -9.20389 -8.65195 -8.55635 -7.92804 -7.31704 -6.19126 -4.26054 1.31977 1.87834 2.03404 2.37605 2.97946 3.15460 3.21291 3.27536 3.29084 3.51153 4.23655 4.30021 4.61903 4.78554 4.86094 4.91241 4.99311 5.04730 5.09154 5.12137 5.16716 5.32052 5.32536 5.42273 5.44880 5.49958 5.59810 5.66190 5.76266 5.78998 5.84936 5.92953 5.96943 5.99853 6.02312 6.32594 6.36501 6.39101 6.51982 6.55837 6.72765 6.87616 6.95165 7.02916 7.33441 7.36648 7.43858 7.55229 7.56468 7.78289 8.10155 8.39717 8.79580 9.39864 10.91542 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002915 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.326466 B = 9603.879252 C =11017.142316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.110 4.110 4 C 0.122 3.878 5 N -0.620 5.620 6 C 0.073 3.927 7 C 0.599 3.401 8 O -0.542 6.542 9 C -0.252 4.252 10 C 0.116 3.884 11 N -0.453 5.453 12 C 0.102 3.898 13 C 0.012 3.988 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.095 3.905 23 C -0.112 4.112 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.076 4.076 27 C -0.064 4.064 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.174 0.826 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -11.519 -12.503 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.171 4.171 3 C -0.148 4.148 4 C 0.000 4.000 5 N -0.354 5.354 6 C -0.070 4.070 7 C 0.390 3.610 8 O -0.419 6.419 9 C -0.263 4.263 10 C -0.019 4.019 11 N -0.130 5.130 12 C -0.017 4.017 13 C -0.026 4.026 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.011 4.011 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.164 4.164 26 C -0.094 4.094 27 C -0.069 4.069 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.191 0.809 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.060 -11.378 -11.963 19.872 hybrid contribution 1.203 0.367 0.128 1.265 sum -9.856 -11.010 -11.835 18.933 Atomic orbital electron populations 1.23890 0.96049 1.01876 1.00911 1.22836 0.96043 0.98068 1.00142 1.21139 0.98791 0.95898 0.98989 1.21352 0.94489 0.84795 0.99397 1.47709 1.23694 1.11673 1.52319 1.22025 0.85102 1.03537 0.96377 1.17356 0.83333 0.82463 0.77889 1.90749 1.26185 1.84403 1.40591 1.19663 0.92318 0.91935 1.22424 1.22249 0.95907 0.85801 0.97915 1.44384 1.06842 1.04745 1.57019 1.22447 0.77931 0.98221 1.03118 1.19454 0.96775 0.97618 0.88756 1.20937 1.01110 1.41387 0.93646 0.92310 1.25010 0.98129 0.95606 0.95339 1.69964 1.38142 1.46153 0.98203 0.86570 0.83910 0.79742 0.77283 1.20059 1.21128 1.20081 1.18247 0.84800 0.93311 1.04702 1.20154 0.97234 0.91956 1.03848 1.20740 0.91635 0.99274 1.01305 1.20842 0.98754 0.92701 1.04066 1.20437 0.94483 0.95396 0.99095 1.18659 0.92846 0.90584 1.04764 0.88545 0.88514 0.87332 0.91006 0.90979 0.90622 0.89598 0.92451 0.91120 0.90323 0.80927 0.90167 0.89914 0.95890 0.95658 0.92552 0.85816 0.85975 0.86327 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.15 -1.26 9.52 -36.02 -0.34 -1.60 16 3 C -0.11 -1.04 5.98 -27.87 -0.17 -1.21 16 4 C 0.12 1.26 5.40 -4.04 -0.02 1.24 16 5 N -0.62 -7.52 2.87 -183.03 -0.53 -8.05 16 6 C 0.07 0.65 9.02 59.85 0.54 1.19 16 7 C 0.60 9.72 7.60 -12.75 -0.10 9.62 16 8 O -0.54 -10.49 16.65 5.22 0.09 -10.40 16 9 C -0.25 -4.25 5.54 -103.31 -0.57 -4.82 16 10 C 0.12 1.81 8.98 -16.62 -0.15 1.66 16 11 N -0.45 -7.94 2.74 -114.22 -0.31 -8.26 16 12 C 0.10 1.87 5.89 -4.04 -0.02 1.85 16 13 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 14 C -0.53 -13.85 9.11 -34.44 -0.31 -14.16 16 15 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.09 1.72 6.79 -83.97 -0.57 1.15 16 23 C -0.11 -1.88 9.97 -39.43 -0.39 -2.27 16 24 C -0.11 -1.61 10.01 -39.56 -0.40 -2.01 16 25 C -0.14 -2.10 10.03 -39.57 -0.40 -2.49 16 26 C -0.08 -1.25 10.09 -39.37 -0.40 -1.64 16 27 C -0.06 -1.15 6.35 -104.96 -0.67 -1.82 16 28 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 30 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.09 1.05 7.36 -51.93 -0.38 0.67 16 35 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 36 H 0.07 0.46 8.03 -51.93 -0.42 0.05 16 37 H 0.08 0.75 5.89 -51.93 -0.31 0.45 16 38 H 0.17 2.14 6.16 -52.49 -0.32 1.81 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -32.38 395.30 -10.11 -42.49 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.23 Total: 2.52 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.80 Total: -14.76 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.38 -10.11 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346669908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.500 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds