Wall clock time and date at job start Tue Mar 31 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99489 * 2 1 4 4 C 1.53010 * 109.46673 * 125.00481 * 3 2 1 5 5 N 1.46503 * 109.46820 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99549 * 269.99871 * 5 4 3 7 7 C 1.34775 * 119.99996 * 89.99829 * 5 4 3 8 8 O 1.21670 * 120.00050 * 4.54855 * 7 5 4 9 9 C 1.46914 * 119.99625 * 184.54177 * 7 5 4 10 10 C 1.36379 * 126.77096 * 322.80786 * 9 7 5 11 11 N 1.35466 * 109.76834 * 180.02562 * 10 9 7 12 12 C 1.46501 * 124.78424 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47045 * 265.01954 * 12 11 10 14 14 C 1.50704 * 109.47006 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99815 * 179.72581 * 14 13 12 17 17 N 1.31516 * 119.99823 * 0.27791 * 16 14 13 18 18 Si 1.86792 * 119.99947 * 180.27583 * 16 14 13 19 19 H 1.48499 * 109.47342 * 59.99876 * 18 16 14 20 20 H 1.48501 * 109.47554 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47165 * 300.00072 * 18 16 14 22 22 C 1.37966 * 110.42729 * 0.22772 * 11 10 9 23 23 C 1.39123 * 133.18583 * 180.41789 * 22 11 10 24 24 C 1.37767 * 119.92989 * 179.62770 * 23 22 11 25 25 C 1.38749 * 120.63068 * 359.75291 * 24 23 22 26 26 C 1.37759 * 120.30625 * 359.97438 * 25 24 23 27 27 C 1.39271 * 119.66665 * 0.02562 * 26 25 24 28 28 H 1.08000 * 119.99282 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00326 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00326 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47226 * 5.00929 * 3 2 1 32 32 H 1.08994 * 109.47219 * 244.99839 * 3 2 1 33 33 H 1.08993 * 109.47233 * 59.99856 * 4 3 2 34 34 H 1.09004 * 109.47085 * 300.00067 * 4 3 2 35 35 H 1.09005 * 109.46820 * 264.82004 * 6 5 4 36 36 H 1.09005 * 109.47682 * 24.81915 * 6 5 4 37 37 H 1.08998 * 109.47282 * 144.82300 * 6 5 4 38 38 H 1.07998 * 125.11257 * 359.97438 * 10 9 7 39 39 H 1.09000 * 109.47087 * 145.02288 * 12 11 10 40 40 H 1.08994 * 109.47290 * 25.02511 * 12 11 10 41 41 H 1.09000 * 109.46905 * 60.00223 * 13 12 11 42 42 H 1.08994 * 109.47531 * 300.00409 * 13 12 11 43 43 H 0.97006 * 119.99479 * 179.97438 * 17 16 14 44 44 H 1.08005 * 120.03112 * 359.37980 * 23 22 11 45 45 H 1.07998 * 119.67971 * 179.72953 * 24 23 22 46 46 H 1.08005 * 119.84632 * 179.97438 * 25 24 23 47 47 H 1.07993 * 120.16222 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3331 1.1817 5 7 3.7670 2.6022 1.1821 6 6 5.0332 2.7176 0.4543 7 6 3.2755 3.6634 1.8519 8 8 2.2681 3.5453 2.5238 9 6 3.9564 4.9627 1.7709 10 6 5.3024 5.1775 1.7229 11 7 5.5519 6.5071 1.6530 12 6 6.8881 7.1044 1.5878 13 6 7.3416 7.4944 2.9960 14 6 8.7158 8.1094 2.9288 15 1 9.2155 8.2122 1.9769 16 6 9.3326 8.5465 4.0819 17 7 8.7240 8.4216 5.2410 18 14 11.0327 9.3157 3.9977 19 1 10.9873 10.5237 3.1352 20 1 11.4711 9.6986 5.3639 21 1 11.9918 8.3359 3.4271 22 6 4.3705 7.2197 1.6577 23 6 4.0779 8.5784 1.5965 24 6 2.7667 9.0006 1.6134 25 6 1.7292 8.0822 1.6860 26 6 1.9983 6.7324 1.7417 27 6 3.3194 6.2916 1.7254 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4028 -0.9313 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2355 2.1131 35 1 5.8630 2.5412 1.1388 36 1 5.0602 1.9794 -0.3473 37 1 5.1186 3.7180 0.0300 38 1 6.0558 4.4039 1.7390 39 1 6.8586 7.9926 0.9566 40 1 7.5884 6.3829 1.1672 41 1 7.3711 6.6063 3.6272 42 1 6.6413 8.2159 3.4166 43 1 9.1581 8.7288 6.0523 44 1 4.8781 9.3017 1.5398 45 1 2.5443 10.0566 1.5701 46 1 0.7058 8.4273 1.6989 47 1 1.1890 6.0196 1.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346669908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:46 Heat of formation + Delta-G solvation = 21.924078 kcal Electronic energy + Delta-G solvation = -26994.358409 eV Core-core repulsion = 23335.193388 eV Total energy + Delta-G solvation = -3659.165021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55315 -40.52011 -38.16403 -37.18602 -35.91513 -35.38455 -34.01319 -31.95772 -30.98647 -30.29007 -29.38570 -27.70978 -26.87581 -24.94546 -23.95113 -23.33973 -22.62068 -21.48862 -20.71360 -20.06563 -18.76509 -18.23402 -17.72683 -17.01251 -16.76068 -16.63836 -16.55662 -16.20303 -15.90529 -15.55951 -15.20636 -14.90040 -14.73760 -14.44249 -14.28653 -14.26447 -14.17624 -13.68688 -13.55909 -13.47066 -13.18055 -12.94369 -12.86319 -12.81583 -12.56766 -12.36128 -12.04187 -11.98142 -11.95922 -11.88092 -11.63891 -11.42954 -10.97460 -10.62605 -10.54710 -10.35573 -9.61192 -9.20117 -8.62245 -8.24747 -6.39135 0.06476 0.61976 1.09688 1.37890 1.41730 1.44025 1.52012 1.80660 2.00761 2.32109 2.39793 2.96391 3.09662 3.65146 3.71123 3.72567 3.95465 4.06118 4.13638 4.21148 4.24747 4.30527 4.36462 4.42850 4.44603 4.49718 4.57626 4.61669 4.69355 4.71391 4.72369 4.81374 4.93087 4.93382 5.04673 5.09913 5.13549 5.35596 5.37484 5.51708 5.59256 5.63506 5.69672 5.70501 5.73902 5.83686 5.90706 6.02892 6.23314 6.29107 6.38548 6.77830 7.21849 7.32191 8.86420 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002915 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.326466 B = 9603.879252 C =11017.142316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.103 4.103 4 C 0.120 3.880 5 N -0.611 5.611 6 C 0.064 3.936 7 C 0.593 3.407 8 O -0.587 6.587 9 C -0.267 4.267 10 C 0.123 3.877 11 N -0.462 5.462 12 C 0.120 3.880 13 C 0.020 3.980 14 C -0.540 4.540 15 H 0.077 0.923 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.070 3.930 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.094 4.094 27 C -0.090 4.090 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.205 0.795 39 H 0.089 0.911 40 H 0.111 0.889 41 H -0.007 1.007 42 H -0.013 1.013 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 -12.247 -14.572 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C -0.142 4.142 4 C -0.002 4.002 5 N -0.343 5.343 6 C -0.077 4.077 7 C 0.384 3.616 8 O -0.468 6.468 9 C -0.278 4.278 10 C -0.010 4.010 11 N -0.140 5.140 12 C 0.000 4.000 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.216 1.216 21 H -0.186 1.186 22 C -0.035 4.035 23 C -0.151 4.151 24 C -0.124 4.124 25 C -0.155 4.155 26 C -0.112 4.112 27 C -0.094 4.094 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.222 0.778 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.011 0.989 42 H 0.005 0.995 43 H 0.072 0.928 44 H 0.141 0.859 45 H 0.172 0.828 46 H 0.170 0.830 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.758 -12.136 -14.088 20.999 hybrid contribution 0.707 0.579 0.759 1.188 sum -9.051 -11.558 -13.329 19.828 Atomic orbital electron populations 1.24027 0.96405 1.02173 1.01078 1.22957 0.96049 0.98237 0.99918 1.21053 0.98208 0.95682 0.99224 1.21517 0.95220 0.84843 0.98601 1.47785 1.24455 1.11092 1.50953 1.22291 0.83759 1.04363 0.97334 1.17421 0.82906 0.83239 0.78075 1.90714 1.28099 1.85151 1.42873 1.19862 0.92932 0.92096 1.22906 1.22710 0.96203 0.85651 0.96466 1.44332 1.06312 1.05383 1.57987 1.22133 0.78890 0.99621 0.99378 1.19255 0.95634 0.95175 0.91695 1.21444 1.01790 1.40395 0.94247 0.90536 1.26006 1.02436 0.96276 0.94983 1.70127 1.40189 1.47914 0.99055 0.85440 0.78912 0.79230 0.77117 1.18941 1.21601 1.18596 1.18558 0.85165 0.94019 1.05711 1.20396 0.98363 0.91599 1.04787 1.21138 0.90701 1.00980 0.99533 1.21225 1.00441 0.91753 1.02058 1.20620 0.94049 0.96511 1.00039 1.19033 0.93544 0.91399 1.05432 0.86814 0.89819 0.84928 0.94056 0.89510 0.87011 0.92052 0.90905 0.87897 0.90926 0.77825 0.89248 0.87064 0.98901 0.99479 0.92761 0.85907 0.82759 0.83047 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 14.32 67.78 0.97 -2.22 16 2 C -0.15 -2.31 9.52 25.65 0.24 -2.06 16 3 C -0.10 -1.87 5.98 29.85 0.18 -1.69 16 4 C 0.12 2.34 5.40 86.38 0.47 2.80 16 5 N -0.61 -14.30 2.87 -851.21 -2.45 -16.74 16 6 C 0.06 0.98 9.02 127.77 1.15 2.14 16 7 C 0.59 19.74 7.60 86.51 0.66 20.39 16 8 O -0.59 -23.95 16.65 -4.25 -0.07 -24.02 16 9 C -0.27 -9.18 5.54 -19.01 -0.11 -9.28 16 10 C 0.12 3.81 8.98 83.70 0.75 4.56 16 11 N -0.46 -16.25 2.74 -515.29 -1.41 -17.67 16 12 C 0.12 4.29 5.89 86.38 0.51 4.80 16 13 C 0.02 0.99 5.30 29.85 0.16 1.15 16 14 C -0.54 -27.98 9.11 25.60 0.23 -27.74 16 15 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.00 0.08 5.46 84.65 0.46 0.55 16 17 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 18 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 C 0.07 2.60 6.79 38.91 0.26 2.86 16 23 C -0.13 -4.44 9.97 22.37 0.22 -4.22 16 24 C -0.10 -2.96 10.01 22.28 0.22 -2.74 16 25 C -0.14 -3.83 10.03 22.28 0.22 -3.61 16 26 C -0.09 -3.16 10.09 22.40 0.23 -2.94 16 27 C -0.09 -3.33 6.35 -20.08 -0.13 -3.45 16 28 H 0.11 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.08 1.52 7.84 -2.91 -0.02 1.50 16 30 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.04 1.00 7.79 -2.39 -0.02 0.98 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 34 H 0.06 1.52 7.36 -2.38 -0.02 1.50 16 35 H 0.07 0.93 7.31 -2.38 -0.02 0.92 16 36 H 0.10 0.95 8.03 -2.38 -0.02 0.93 16 37 H 0.07 1.25 5.89 -2.39 -0.01 1.23 16 38 H 0.21 4.69 6.16 -2.91 -0.02 4.67 16 39 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.11 3.35 8.11 -2.39 -0.02 3.33 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 43 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 44 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 45 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 47 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.23 395.30 6.04 -68.19 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.94 Total: 22.42 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 6.71 Total: -20.71 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.57 Total: -89.58 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.02 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -74.23 6.04 -68.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346669908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.117 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds